메뉴 건너뛰기




Volumn 160, Issue 7, 2009, Pages 457-465

Natural and unnatural ribozymes: Back to the primordial RNA world

Author keywords

Ribosomes; Ribozymes; RNA world hypothesis; Translation machinery

Indexed keywords

DNA POLYMERASE; MESSENGER RNA; RIBONUCLEASE; RIBOZYME; RNA; RNA LIGASE; RNA POLYMERASE; SMALL NUCLEAR RNA;

EID: 70349995865     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2009.05.005     Document Type: Article
Times cited : (26)

References (64)
  • 1
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel D.P., and Szostak J.W. Isolation of new ribozymes from a large pool of random sequences. Science 261 (1993) 1411-1418
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 2
    • 46049099976 scopus 로고    scopus 로고
    • Correlating ribosome function with high-resolution structures
    • Bashan A., and Yonath A. Correlating ribosome function with high-resolution structures. Trends Microbiol. 16 (2008) 326-335
    • (2008) Trends Microbiol. , vol.16 , pp. 326-335
    • Bashan, A.1    Yonath, A.2
  • 4
    • 0029044353 scopus 로고
    • Self-Incorporation of coenzymes by ribozymes
    • Breaker R.R., and Joyce G.F. Self-Incorporation of coenzymes by ribozymes. J. Mol. Evol. 40 (1995) 551-558
    • (1995) J. Mol. Evol. , vol.40 , pp. 551-558
    • Breaker, R.R.1    Joyce, G.F.2
  • 5
    • 0019856947 scopus 로고
    • In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence
    • Cech T.R., Zaug A.J., and Grabowski P.J. In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence. Cell 27 (1981) 487-496
    • (1981) Cell , vol.27 , pp. 487-496
    • Cech, T.R.1    Zaug, A.J.2    Grabowski, P.J.3
  • 6
    • 34249672905 scopus 로고    scopus 로고
    • Ribozyme catalysis of metabolism in the RNA world
    • Chen X., Li N., and Ellington A.D. Ribozyme catalysis of metabolism in the RNA world. Chem. Biodivers. 4 (2007) 633-655
    • (2007) Chem. Biodivers. , vol.4 , pp. 633-655
    • Chen, X.1    Li, N.2    Ellington, A.D.3
  • 7
    • 33846279049 scopus 로고    scopus 로고
    • Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
    • Cochrane J.C., Lipchock S.V., and Strobel S.A. Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chem. Biol. 14 (2007) 97-105
    • (2007) Chem. Biol. , vol.14 , pp. 97-105
    • Cochrane, J.C.1    Lipchock, S.V.2    Strobel, S.A.3
  • 8
    • 51649103765 scopus 로고    scopus 로고
    • Catalytic strategies of self-cleaving ribozymes
    • Cochrane J.C., and Strobel S.A. Catalytic strategies of self-cleaving ribozymes. Accounts Chem. Res. 41 (2008) 1027-1035
    • (2008) Accounts Chem. Res. , vol.41 , pp. 1027-1035
    • Cochrane, J.C.1    Strobel, S.A.2
  • 9
    • 0036849943 scopus 로고    scopus 로고
    • RNA-catalyzed thioester synthesis
    • Coleman T.M., and Huang F. RNA-catalyzed thioester synthesis. Chem. Biol. 9 (2002) 1227-1236
    • (2002) Chem. Biol. , vol.9 , pp. 1227-1236
    • Coleman, T.M.1    Huang, F.2
  • 10
    • 0029832218 scopus 로고    scopus 로고
    • RNA-catalysed RNA polymerization using nucleoside triphosphates
    • Ekland E.H., and Bartel D.P. RNA-catalysed RNA polymerization using nucleoside triphosphates. Nature 382 (1996) 373-376
    • (1996) Nature , vol.382 , pp. 373-376
    • Ekland, E.H.1    Bartel, D.P.2
  • 11
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 12
    • 33745166320 scopus 로고    scopus 로고
    • RNase P: interface of the RNA and protein worlds
    • Evans D., Marquez S.M., and Pace N.R. RNase P: interface of the RNA and protein worlds. Trends Biochem. Sci. 31 (2006) 333-341
    • (2006) Trends Biochem. Sci. , vol.31 , pp. 333-341
    • Evans, D.1    Marquez, S.M.2    Pace, N.R.3
  • 13
    • 0034708334 scopus 로고    scopus 로고
    • Structure and function of the hairpin ribozyme
    • Fedor M.J. Structure and function of the hairpin ribozyme. J. Mol. Biol. 297 (2000) 269-291
    • (2000) J. Mol. Biol. , vol.297 , pp. 269-291
    • Fedor, M.J.1
  • 16
    • 36849148382 scopus 로고
    • Origin of life: the RNA world
    • Gilbert W. Origin of life: the RNA world. Nature 319 (1986) 618
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 17
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada C., Gardiner K., Marsh T., Pace N., and Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35 (1983) 849-857
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 19
    • 0141450351 scopus 로고    scopus 로고
    • The enigma of ribonuclease P evolution
    • Hartmann E., and Hartmann R.K. The enigma of ribonuclease P evolution. Trends Genet. 19 (2003) 561-569
    • (2003) Trends Genet. , vol.19 , pp. 561-569
    • Hartmann, E.1    Hartmann, R.K.2
  • 20
    • 33747378836 scopus 로고    scopus 로고
    • Self-assembly of a group I intron from inactive oligonucleotide fragments
    • Hayden E.J., and Lehman N. Self-assembly of a group I intron from inactive oligonucleotide fragments. Chem. Biol. 13 (2006) 909-918
    • (2006) Chem. Biol. , vol.13 , pp. 909-918
    • Hayden, E.J.1    Lehman, N.2
  • 21
    • 0031551113 scopus 로고    scopus 로고
    • 5′-RNA self-capping from guanosine diphosphate
    • Huang F., and Yarus M. 5′-RNA self-capping from guanosine diphosphate. Biochemistry 36 (1997) 6557-6563
    • (1997) Biochemistry , vol.36 , pp. 6557-6563
    • Huang, F.1    Yarus, M.2
  • 23
    • 0036761518 scopus 로고    scopus 로고
    • DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role
    • Johansen S., Einvik C., and Nielsen H. DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role. Biochimie 84 (2002) 905-912
    • (2002) Biochimie , vol.84 , pp. 905-912
    • Johansen, S.1    Einvik, C.2    Nielsen, H.3
  • 24
    • 0028208494 scopus 로고
    • An intron in the nuclear ribosomal DNA of Didymium iridis encodes for a group I ribozyme and a novel ribozyme that cooperate in self-plicing
    • Johansen S., and Vogt V.M. An intron in the nuclear ribosomal DNA of Didymium iridis encodes for a group I ribozyme and a novel ribozyme that cooperate in self-plicing. Cell 76 (1994) 725-734
    • (1994) Cell , vol.76 , pp. 725-734
    • Johansen, S.1    Vogt, V.M.2
  • 25
    • 0035906978 scopus 로고    scopus 로고
    • RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension
    • Johnston W.K., Unrau P.J., Lawrence M.S., Glasner M.E., and Bartel D.P. RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension. Science 292 (2001) 1319-1325
    • (2001) Science , vol.292 , pp. 1319-1325
    • Johnston, W.K.1    Unrau, P.J.2    Lawrence, M.S.3    Glasner, M.E.4    Bartel, D.P.5
  • 26
    • 3042732096 scopus 로고    scopus 로고
    • Directed evolution of nucleic acid enzymes
    • Joyce G.F. Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem. 73 (2004) 791-836
    • (2004) Annu. Rev. Biochem. , vol.73 , pp. 791-836
    • Joyce, G.F.1
  • 27
    • 33847784925 scopus 로고    scopus 로고
    • Eukaryotic RNase P RNA mediates cleavage in the absence of protein
    • Kikovska E., Svärd S.G., and Kirsebom L.A. Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc. Natl. Acad. Sci. U.S.A. 104 (2007) 2062-2067
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 2062-2067
    • Kikovska, E.1    Svärd, S.G.2    Kirsebom, L.A.3
  • 28
    • 8844224949 scopus 로고    scopus 로고
    • Cross-catalytic replication of an RNA ligase ribozyme
    • Kim D.E., and Joyce G.F. Cross-catalytic replication of an RNA ligase ribozyme. Chem. Biol. 11 (2004) 1505-1512
    • (2004) Chem. Biol. , vol.11 , pp. 1505-1512
    • Kim, D.E.1    Joyce, G.F.2
  • 31
  • 32
    • 15544388643 scopus 로고    scopus 로고
    • Ribozyme-catalyzed aminoacylation from CoA thioesters
    • Li N., and Huang F. Ribozyme-catalyzed aminoacylation from CoA thioesters. Biochemistry 44 (2005) 4582-4590
    • (2005) Biochemistry , vol.44 , pp. 4582-4590
    • Li, N.1    Huang, F.2
  • 33
    • 1642580826 scopus 로고    scopus 로고
    • The Varkud satellite ribozyme
    • Lilley D.M. The Varkud satellite ribozyme. RNA 10 (2004) 151-158
    • (2004) RNA , vol.10 , pp. 151-158
    • Lilley, D.M.1
  • 34
    • 61349193830 scopus 로고    scopus 로고
    • Self-sustained replication of an RNA enzyme
    • Lincoln T.A., and Joyce G.F. Self-sustained replication of an RNA enzyme. Science 323 (2009) 1229-1232
    • (2009) Science , vol.323 , pp. 1229-1232
    • Lincoln, T.A.1    Joyce, G.F.2
  • 35
    • 0028124128 scopus 로고
    • In vitro evolution of new ribozymes with polynucleotide kinase activity
    • Lorsch J.R., and Szostak J.W. In vitro evolution of new ribozymes with polynucleotide kinase activity. Nature 371 (1994) 31-36
    • (1994) Nature , vol.371 , pp. 31-36
    • Lorsch, J.R.1    Szostak, J.W.2
  • 36
    • 0037646509 scopus 로고    scopus 로고
    • In vitro selection of adenine-dependent hairpin ribozymes
    • Meli M., Vergne J., and Maurel M.C. In vitro selection of adenine-dependent hairpin ribozymes. J. Biol. Chem. 278 (2003) 9835-9842
    • (2003) J. Biol. Chem. , vol.278 , pp. 9835-9842
    • Meli, M.1    Vergne, J.2    Maurel, M.C.3
  • 37
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel F., and Ferat J.L. Structure and activities of group II introns. Annu. Rev. Biochem. 64 (1995) 435-461
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 38
    • 0020198881 scopus 로고
    • Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure
    • Michel F., Jacquier A., and Dujon B. Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure. Biochimie 64 (1982) 867-881
    • (1982) Biochimie , vol.64 , pp. 867-881
    • Michel, F.1    Jacquier, A.2    Dujon, B.3
  • 39
    • 33846570047 scopus 로고    scopus 로고
    • A new RNA branching activity: the GIR1 ribozyme
    • Nielsen H., and Johansen S.D. A new RNA branching activity: the GIR1 ribozyme. Blood Cells Mol. Dis. 38 (2007) 102-109
    • (2007) Blood Cells Mol. Dis. , vol.38 , pp. 102-109
    • Nielsen, H.1    Johansen, S.D.2
  • 40
    • 24644492436 scopus 로고    scopus 로고
    • An mRNA is capped by a 2′5′ lariat catalized by a group I-like ribozyme
    • Nielsen H., Westhof E., and Johansen S. An mRNA is capped by a 2′5′ lariat catalized by a group I-like ribozyme. Science 309 (2005) 1584-1587
    • (2005) Science , vol.309 , pp. 1584-1587
    • Nielsen, H.1    Westhof, E.2    Johansen, S.3
  • 41
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • Nissen P., Hansen J., Ban N., Moore P., and Steitz T. The structural basis of ribosome activity in peptide bond synthesis. Science 289 (2000) 920-930
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.4    Steitz, T.5
  • 42
  • 43
    • 24644522818 scopus 로고    scopus 로고
    • Capping by branching: a new ribozyme makes tiny lariats
    • Pyle A.M. Capping by branching: a new ribozyme makes tiny lariats. Science 309 (2005) 1530-1531
    • (2005) Science , vol.309 , pp. 1530-1531
    • Pyle, A.M.1
  • 44
    • 0001005285 scopus 로고    scopus 로고
    • Ribonuclease A
    • Raines R.T. Ribonuclease A. Chem. Rev. 98 (1998) 1045-1066
    • (1998) Chem. Rev. , vol.98 , pp. 1045-1066
    • Raines, R.T.1
  • 45
    • 23844545533 scopus 로고    scopus 로고
    • Group II intron retroelements: function and diversity
    • Robart A.R., and Zimmerly S. Group II intron retroelements: function and diversity. Cytogenet. Genome. Res. 110 (2005) 589-597
    • (2005) Cytogenet. Genome. Res. , vol.110 , pp. 589-597
    • Robart, A.R.1    Zimmerly, S.2
  • 46
    • 0027942148 scopus 로고
    • Requirements for self-splicing of a group I intron from Physarum polycephalum
    • Rocheleau G.A., and Woodson S.A. Requirements for self-splicing of a group I intron from Physarum polycephalum. Nucleic Acids Res. 22 (1994) 4315-4320
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4315-4320
    • Rocheleau, G.A.1    Woodson, S.A.2
  • 47
    • 0035032445 scopus 로고    scopus 로고
    • The effect of cytidine on the structure and function of an RNA ligase ribozyme
    • Rogers J., and Joyce G.F. The effect of cytidine on the structure and function of an RNA ligase ribozyme. RNA 7 (2001) 395-404
    • (2001) RNA , vol.7 , pp. 395-404
    • Rogers, J.1    Joyce, G.F.2
  • 48
    • 33749034196 scopus 로고    scopus 로고
    • A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
    • Salehi-Ashtiani K., Lupták A., Litovchick A., and Szostak J.W. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science 313 (2006) 1788-1792
    • (2006) Science , vol.313 , pp. 1788-1792
    • Salehi-Ashtiani, K.1    Lupták, A.2    Litovchick, A.3    Szostak, J.W.4
  • 49
    • 34548778155 scopus 로고    scopus 로고
    • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    • Serganov A., and Patel D.J. Ribozymes, riboswitches and beyond: regulation of gene expression without proteins. Nat. Rev. Genet. 8 (2007) 776-790
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 776-790
    • Serganov, A.1    Patel, D.J.2
  • 50
    • 0035997396 scopus 로고    scopus 로고
    • Catalytic strategies of the Hepatitis Delta Virus ribozymes
    • Shih I.H., and Been M.D. Catalytic strategies of the Hepatitis Delta Virus ribozymes. Annu. Rev. Biochem. 71 (2002) 887-917
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 887-917
    • Shih, I.H.1    Been, M.D.2
  • 51
    • 24644492337 scopus 로고    scopus 로고
    • Structural evidence for a two-metal-ion mechanism of group I intron splicing
    • Stahley M.R., and Strobel S.A. Structural evidence for a two-metal-ion mechanism of group I intron splicing. Science 309 (2005) 1587-1590
    • (2005) Science , vol.309 , pp. 1587-1590
    • Stahley, M.R.1    Strobel, S.A.2
  • 52
    • 36549083651 scopus 로고    scopus 로고
    • RNA catalysis: ribozymes, ribosomes, and riboswitches
    • Strobel S.A., and Cochrane J.C. RNA catalysis: ribozymes, ribosomes, and riboswitches. Curr. Opin. Chem. Biol. 11 (2007) 636-643
    • (2007) Curr. Opin. Chem. Biol. , vol.11 , pp. 636-643
    • Strobel, S.A.1    Cochrane, J.C.2
  • 53
    • 0036015843 scopus 로고    scopus 로고
    • A selected ribozyme catalyzing diverse dipeptide synthesis
    • Sun L., Cui Z., Gottlieb R., and Zhang B. A selected ribozyme catalyzing diverse dipeptide synthesis. Chem. Biol. 9 (2002) 619-628
    • (2002) Chem. Biol. , vol.9 , pp. 619-628
    • Sun, L.1    Cui, Z.2    Gottlieb, R.3    Zhang, B.4
  • 56
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., and Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249 (1990) 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 57
    • 0033557745 scopus 로고    scopus 로고
    • In vivo expression of the nucleolar group I intron-encoded I-DirI homing endonuclease involves the removal of a spliceosomal intron
    • Vader A., Nielsen H., and Johansen S. In vivo expression of the nucleolar group I intron-encoded I-DirI homing endonuclease involves the removal of a spliceosomal intron. EMBO J. 18 (1999) 1003-1013
    • (1999) EMBO J. , vol.18 , pp. 1003-1013
    • Vader, A.1    Nielsen, H.2    Johansen, S.3
  • 58
    • 34250660469 scopus 로고    scopus 로고
    • The spliceosome: a ribozyme at heart?
    • Valadkhan S. The spliceosome: a ribozyme at heart?. Biol. Chem. 388 (2007) 693-697
    • (2007) Biol. Chem. , vol.388 , pp. 693-697
    • Valadkhan, S.1
  • 59
    • 58249123666 scopus 로고    scopus 로고
    • A natural ribozyme with 3′,5′ RNA ligase activity
    • Vicens Q., and Cech T.R. A natural ribozyme with 3′,5′ RNA ligase activity. Nat. Chem. Biol. 5 (2009) 97-99
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 97-99
    • Vicens, Q.1    Cech, T.R.2
  • 61
    • 0002023468 scopus 로고
    • Everse J., Anderson N., and You K.-S. (Eds), Academic Press, New York
    • White H.B. In: Everse J., Anderson N., and You K.-S. (Eds). The Pyridine Nucleotide Coenzymes (1982), Academic Press, New York 1-17
    • (1982) The Pyridine Nucleotide Coenzymes , pp. 1-17
    • White, H.B.1
  • 62
    • 0017232521 scopus 로고
    • Coenzymes as fossils of an earlier metabolic state
    • White III H.B. Coenzymes as fossils of an earlier metabolic state. J. Mol. Evol. 7 (1975) 101-104
    • (1975) J. Mol. Evol. , vol.7 , pp. 101-104
    • White III, H.B.1
  • 63
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler W.C., Nahvi A., Roth A., Collins J.A., and Breaker R.R. Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428 (2004) 281-286
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 64
    • 34250860849 scopus 로고    scopus 로고
    • Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
    • Zaher H.S., and Unrau P.J. Selection of an improved RNA polymerase ribozyme with superior extension and fidelity. RNA 13 (2007) 1017-1026
    • (2007) RNA , vol.13 , pp. 1017-1026
    • Zaher, H.S.1    Unrau, P.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.