D1 haem biogenesis - Assessing the roles of three nir gene products

FEBS Journal

Volumn 276, Issue 21, 2009, Pages 6399-6411

  Zajicek, Richard S ^a   Bali, Shilpa ^a   Arnold, Simon ^a   Brindley, Amanda A ^b   Warren, Martin J ^b   Ferguson, Stuart J ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF KENT   (United Kingdom)

Author keywords

D1 haem; Nitrite reductase; Precorrin 2; Sirohydrochlorin; Uroporphyrinogen III

Indexed keywords

CYTOCHROME C; CYTOCHROME CD1; CYTOCHROME D1; HEME; HEMOPROTEIN; NIRN PROTEIN; NITRATE REDUCTASE; PORPHYRINOGEN; PRECORRIN 2; TETRAPYRROLE DERIVATIVE; UNCLASSIFIED DRUG; UROPORPHYRINOGEN III SYNTHASE;

ARTICLE; BIOGENESIS; CATALYSIS; COMPLEX FORMATION; DENITRIFYING BACTERIUM; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME INHIBITION; GENE INACTIVATION; GENETIC CODE; NONHUMAN; PARACOCCUS PANTOTROPHUS; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; SEQUENCE ANALYSIS; STRUCTURAL GENE;

ANION TRANSPORT PROTEINS; BACTERIA; CYTOCHROMES; ESCHERICHIA COLI PROTEINS; HEME; NITRITE REDUCTASES; PARACOCCUS PANTOTROPHUS; UROPORPHYRINOGENS; UROPORPHYRINS;

PARACOCCUS PANTOTROPHUS;

EID: 70349952133     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2009.07354.x     Document Type: Article

References (34)

1. 1 nitrite reductase, of Paracoccus pantotrophus LMD 92.63. Microbiology 146, 509 516.
2. 1 nitrite reductase by replacing a switchable methionine heme iron ligand with histidine. Biochemistry 45, 11208 11216.
3. 1 biosynthesis. J Bacteriol 179, 235 242.
4. Mavridou DA, Braun M, Thöny-Meyer L, Stevens JM Ferguson SJ (2008) Avoidance of the cytochrome c biogenesis system by periplasmic CXXCH motifs. Biochem Soc Trans 36, 1124 1128.
5. Hasegawa N, Arai H Igarashi Y (2001) Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase. Biochem Biophys Res Commun 288, 1223 1230.
6. 551 and its oxidase. Biochem J 203, 445 451.
7. 551 and nitrite reductase. Eur J Biochem 194, 109 118.
8. Vijgenboom EBJ Canters GW (1997) In vivo studies disprove an obligatory role of azurin in denitrification in Pseudomonas aeruginosa and show that azu expression is under control of rpoS and ANR. Microbiology 143, 2853 2863.
9. 1 nitrite reductase. J Bacteriol 185, 6308 6315.
10. Ye RW, Arunakumari A, Averill BA Tiedje JM (1992) Mutants of Pseudomonas fluorescens deficient in dissimilatory nitrite reduction are also altered in nitric oxide reduction. J Bacteriol 174, 2560 2564.
11. Deboer APN, Reijnders WNM, Kuenen JG, Stouthamer A Vanspanning RJM (1994) Isolation, sequencing and mutational analysis of a gene-cluster involved in nitrite reduction in Paracoccus denitrificans. Ant Van Leeuwenhoek Int J Mol Microbiol 66, 111 127.
12. 1. J Biol Chem 265, 13498 13500.
13. Fan J, Wang DQ, Liang Z, Guo M, Teng MK Niu LW (2006) Maize uroporphyrinogen III methyltransferase: overexpression of the functional gene fragments in Escherichia coli and one-step purification. Protein Expr Purif 46, 40 46.
14. Stroupe ME, Leech HK, Daniels DS, Warren MJ Getzoff ED (2003) CysG structure reveals tetrapyrrole-binding features and novel regulation of siroheme biosynthesis. Nat Struct Biol 10, 1064 1073.
15. Vévodová JGR, Raux E, Schubert HL, Roper DI, Brindley AA, Scott AI, Roessner CA, Stamford NP, Stroupe ME, Getzoff ED et al. (2004) Structure/function studies on a S-adenosyl-L-methionine-dependent uroporphyrinogen III C methyltransferase (SUMT), a key regulatory enzyme of tetrapyrrole biosynthesis. J Mol Biol 344, 419 433.
16. Blanche F, Debussche L, Thibaut D, Crouzet J Cameron B (1989) Purification and characterization of S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase from Pseudomonas denitrificans. J Bacteriol 171, 4222 4231.
17. 1-type nitrite reductase from, and the absence of a copper-type nitrite reductase from, the aerobic denitrifier Thiosphaera pantotropha; the role of pseudoazurin as an electron donor. Eur J Biochem 212, 377 385.
18. Williams PA, Fülöp V, Garman EF, Saunders NF, Ferguson SJ Hajdu J (1997) Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature 389, 406 412.
19. 1 apomyoglobin complex: an unusual protein environment for the substrate-binding heme of Pseudomonas cytochrome oxidase. J Inorg Biochem 37, 233 257.
20. Cheesman MR, Ferguson SJ, Moir JW, Richardson DJ, Zumft WG Thomson AJ (1997) Two enzymes with a common function but different heme ligands in the forms as isolated. Optical and magnetic properties of the heme groups in the oxidized forms of nitrite reductase, cytochrome cd1, from Pseudomonas stutzeri and Thiosphaera pantotropha. Biochemistry 36, 16267 16276.
21. 1. Biochem J 366, 883 888.
22. 1 activation. Biochem Soc Trans 33, 147 148.
23. 1 and facilitates release of product nitric oxide. J Biol Chem 283, 12555 12563.
24. Moore GR Pettigrew GW (1990) Cyctochrome c: Evolutionary, Structural and Physico-chemical Aspects, Vol. 2, Chapter 7 Springer-Verlag, Berlin.
25. Cartron ML, Roldán MD, Ferguson SJ, Berks BC Richardson DJ (2002) Identification of two domains and distal histidine ligands to the four haems in the bacterial c-type cytochrome NapC; the prototype connector between quinol/quinone and periplasmic oxido-reductases. Biochem J 368, 425 432.
26. Fu RD, Wall JD Voordouw G (1994) Dcra, a c-type heme-containing methyl-accepting protein from Desulfovibrio vulgaris Hildenborough, senses the oxygen concentration or redox potential of the environment. J Bacteriol 176, 344 350.
27. Pokkuluri PR, Pessanha M, Londer YY, Wood SJ, Duke NEC, Wilton R, Catarino T, Saigueiro CA Schiffer M (2008) Structures and solution properties of two novel periplasmic sensor domains with c-type heme from chemotaxis proteins of Geobacter sulfurreducens: implications for signal transduction. J Mol Biol 377, 1498 1517.
28. Wilson AC, Hoch JA Perego M (2009) Two small c-type cytochromes affect virulence gene expression in Bacillus anthracis. Mol Microbiol 72, 109 123.
29. Robertson LA Kuenen JG (1984) Aerobic denitrification - old wine in new bottles? Ant Van Leeuwenhoek Int J Mol Microbiol 50, 525 544.
30. 3 oxidase in Escherichia coli. Biochem Biophys Res Commun 251, 744 747.
31. 1-type cytochromes? Dalton Trans 21, 3410 3418.
32. Nicholas DJ Nason A (1957) Determination of nitrate and nitrite. Methods Enzymol 3, 981 984.
33. Raux E, Leech HK, Beck R, Schubert HL, Santander PJ, Roessner CA, Scott AI, Martens JH, Jahn D, Thermes C et al. (2003) Identification and functional analysis of enzymes required for precorrin-2 dehydrogenation and metal ion insertion in the biosynthesis of sirohaem and cobalamin in Bacillus megaterium. Biochem J 370, 505 516.
34. Schubert HL, Raux E, Leech HK, Brindley AA, Hill CP, Rigby SE Warren MJ (2008) Structure and function of SirC from Bacillus megaterium: a metal-binding precorrin-2 dehydrogenase. Biochem J 415, 257 263.