Transcriptional profiling differences for articular cartilage and repair tissue in equine joint surface lesions

BMC Medical Genomics

Volumn 2, Issue , 2009, Pages

  Mienaltowski, Michael J ^a,d   Huang, Liping ^b   Frisbie, David D ^c   McIlwraith, C Wayne ^c   Stromberg, Arnold J ^b   Bathke, Arne C ^b   MacLeod, James N ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

^b UNIVERSITY OF KENTUCKY   (United States)

^c Department of Environmental and Radiological Health Sciences   (United States)

^d UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; COMPLEMENTARY DNA;

ANIMAL TISSUE; ARTICLE; ARTICULAR CARTILAGE; CARTILAGE CELL; CELL DIFFERENTIATION; CELL POPULATION; CONTROLLED STUDY; DNA MICROARRAY; ELBOW; FIBROCARTILAGE; GENE EXPRESSION PROFILING; HISTOPATHOLOGY; HORSE; JOINT INJURY; MESENCHYME; MICROFRACTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POSTOPERATIVE PERIOD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STATISTICAL ANALYSIS; TISSUE REPAIR;

EQUIDAE;

EID: 70349808231     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-2-60     Document Type: Article

References (63)

1. Healing of articular cartilage in the horse. WE Riddle Jr, Journal of the American Veterinary Medical Association 1970 157 1471 1479 4922186
2. Cell origin and differentiation in the repair of full-thickness defects of articular cartilage. F Shapiro S Koide MJ Glimcher, Journal of Bone and Joint Surgery (American) 1993 75 532 553
3. The reaction of articular cartilage to injury and osteoarthritis. HJ Mankin, The New England Journal of Medicine 1974 291 1285 1292 4610388
4. Biochemical study of repair induced osteochondral defects of the distal portion of the radial carpal bone in horses by use of periosteal autografts. AM Vachon CW McIlwraith CW Kelley, American Journal of Veterinary Research 1991 52 328 332 2012345
5. Morphologic study of induced osteochondral defects of the distal portion of the radial carpal bone in horses by use of glued periosteal autografts. AM Vachon CW McIlwraith GW Trotter RW Norrdin BE Powers, American Journal of Veterinary Research 1991 52 317 327 2012344
6. Early events in cartilage repair after subchondral bone microfracture. DD Frisbie JT Oxford L Southwood GW Trotter WG Rodkey JR Steadman JL Goodnight CW McIlwraith, Clin Orthop Relat Res 2003 407 215 227 10.1097/00003086-200302000- 00031 12567150
7. Morphologic and biochemical study of sternal cartilage autografts for resurfacing induced osteochondral defects in horses. AM Vachon CW McIlwraith BE Powers PR McFadden D Amiel, American Journal of Veterinary Research 1992 53 1038 1047 1626773
8. Improvement of full-thickness chondral defect healing in the human knee after debridement and microfracture using continuous passive motion. JJ Rodrigo JR Steadman JF Silliman HA Fulstone, American Journal of Knee Surgery 1994 7 109 116
9. Culture expanded canine mesenchymal stem cell possess osteochondrogenic potential in vivo and in vitro. S Kadiyala RG Young MA Thiede SA Bruder, Cell Transplantation 1997 6 125 134 10.1016/S0963-6897(96)00279-5 9142444
10. Multilineage Potential of Adult Human Mesenchymal Stem Cells. MF Pittenger AM Mackay SC Beck RK Jaiswal R Douglas JD Mosca MA Moorman DW Simonetti S Craig DR Marshak, Science 1999 284 143 147 10.1126/science.284.5411. 143 10102814
11. Repair of cartilage defect in the rabbit with cultured mesenchymal stem cells from bone marrow. GI Im DY Kin JH Shin CW Hyun WH Cho, The Journal of Bone & Joint Surgery Br 2001 83-B 289 294 10.1302/0301-620X.83B2.10495
12. Chondral resurfacing of articular cartilage defects in the knee with the microfracture technique. Surgical technique. K Mithoefer RJ Williams III RF Warren HG Potter CR Spock EC Jones TL Wickiewicz RG Marx, The Journal of Bone & Joint Surgery 2006 88 294 304 10.2106/JBJS.F.00292
13. Multilineage differentiation potential of equine blood-derived fibroblast-like cells. S Giovannini W Brehm P Mainil-Varlet D Nesic, Differentiation 2008 76 118 129 10.1111/j.1432-0436.2007.00207.x 17697129
14. Advancing cartilage tissue engineering: the application of stem cell technology. J Raghunath HJ Salacinski KM Sales PE Butler AM Seifalian, Current Opinion in Biotechnology 2005 16 503 509 10.1016/j.copbio.2005.08.004 16153817
15. Cell-based cartilage repair: illusion or solution for osteoarthritis. W Richter, Current Opinion In Rheumatology 2007 19 451 456 17762610
16. Arthroscopic subchondral bone plate microfracture technique augments healing of large chondral defects in the radial carpal bone and medial femoral condyle of horses. DD Frisbie GW Trotter BE Powers WG Rodkey JR Steadman RD Howard RD Park CW McIlwriath, Vet Surg 1999 28 242 55 10424704
17. Evaluation of autologous chondrocyte transplantation via a collagen membrane in equine articular cartilage defects - results at 12 and 18 months. DD Frisbie SM Bowman HA Colhoun EF DiCarlo CE Kawcak CW McIlwraith, Osteoarthritis and Cartilage 2008 16 667 679 10.1016/j.joca.2007.09.013 18042409
18. Fibronectin mRNA splice variant in articular cartilage lacks bases encoding the V, III-15, and I-10 proteins segments. JN MacLeod N Burton-Wurster DN Gu G Lust, J Biol Chem 1996 271 18954 18960 10.1074/jbc.271.18.10654 8702559
19. Effect of synovitis and corticosteroids on transcription of cartilage matrix proteins. JN MacLeod SL Fubini DN Gu JW Tetreault RJ Todhunter, American Journal of Veterinary Research 1998 59 1021 1026 9706207
20. Extraction and isolation of mRNA from adult articular cartilage. ME Adams DQ Huang LY Yao LJ Sandell, Anal Biochem 1992 202 89 95 10.1016/0003-2697(92) 90211-O 1621990
21. Modification of the TRI Reagent procedure for isolation of RNA from polysaccharide- and proteoglycan-rich sources. P Chomczynski K Mackey, BioTechniques 1995 19 942 945 8747660
22. Analysis of gene expression in single live neurons. J Eberwine H Yeh K Miyashiro Y Cao S Nair R Finnell M Zettel P Coleman, PNAS USA 1992 89 3010 3014 1557406 10.1073/pnas.89.7.3010
23. Advantages of mRNA amplification for microarray analysis. AL Feldman NG Costouros E Wang M Qian FM Marincola HR Alexander SK Libutti, BioTechniques 2002 33 906 914 12398200
24. Equine Articular Cartilage Microarray (abstract). JN MacLeod, Plant & Animal Genome Conference XII, San Diego, CA, USA 2005 http://www.intl-pag.org/ 13/abstracts/PAG13-W092.html
25. A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain. MR Band C Olmstead RE Everts ZL Liu HA Lewin, Anim Biotechnol 2002 13 163 172 10.1081/ABIO-120005779 12212940
26. Dye-bias correction in dual-labeled cDNA microarray gene expression. BA Rosenzweig PS Pine OE Domon SM Morris JJ Chen FD Sistare, Environ Health Persp 2004 12 480 487
27. H Scheffé The Analysis of Variance New York, NY: Wiley 1959 66
28. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, J Roy Stat Soc 1995 B 289 300
29. Basic Local Alignment Search Tool. SF Altschul W Gish W Miller EW Myers DJ Lipman, J Mol Biol 1990 215 403 410 2231712
30. Construction of a master gene list for a 9322 feature equine cDNA microarray (abstract). SJ Coleman R Clinton JN MacLeod, Plant & Animal Genome Conference XV, San Diego, CA, USA 2007 http://www.intl-pag.org/15/ abstracts/PAG15-P05o-587.html
31. Differential gene expression associated with postnatal equine articular cartilage maturation. MJ Mienaltowski L Huang AJ Stromberg JN MacLeod, BMC Musculoskeletal Disorders 2008 9 149 18986532 10.1186/1471-2474-9-149
32. DAVID: Database for Annotation, Visualization, and Integrated Discovery. G Dennis Jr BT Sherman DA Hosack J Yang W Gao HC Lane RA Lempicki, Genome Biology 2003 4 60 10.1186/gb-2003-4-9-r60
33. Entrez Gene: gene-centered information at NCBI. D Maglott J Ostell KD Pruitt T Tatusova, Nucleic Acids Research 2005 33 54 D58 15608257 10.1093/nar/gki031 (Pubitemid 40207830)
34. Identifying biological themes within lists of genes with EASE. DA Hosack G Dennis Jr BT Sherman HC Lane RA Lempicki, Genome Biology 2003 4 10 70 14519205 10.1186/gb-2003-4-10-r70
35. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. J Vandesompele K De Preter F Pattyn B Poppe N Van Roy A De Paepe F Speleman, Genome Biology 2002 3 ESEARCH0034.1 0034.11 10.1186/gb-2002-3-7-research0034
36. Assumption-free analysis of quantitative real-time PCR data. C Ramakers JM Ruijter RH Lekanne Deprez AFM Moorman, Neuroscience Letters 2003 339 62 66 10.1016/S0304-3940(02)01423-4 12618301
37. Tdifference" formula. JH Schefe KE Lehmann IR Buschmann T Unger K Funke-Kaiser, Journal of Molecular Medicine 2006 84 901 910 10.1007/s00109-006-0097-6 16972087
38. Comparing microarray versus RT-PCR assessment of renal allograft biopsies: similar performance despite different dynamic ranges. K Allanach M Mengel G Einecke B Sis LG Hidalgo T Mueller PF Halloran, Am J Transplantation 2008 8 1006 1015 10.1111/j.1600-6143.2008.02199.x
39. - fibronectin isoform is tightly linked to the presence of a cartilaginous matrix. N Burton-Wurster C Borden G Lust JN MacLeod, Matrix Biology 1998 17 193 203 10.1016/S0945-053X(98)90058-0 9707342
40. A novel cartilage protein (CILP) present in the mid-zone of human articular cartilage increases with age. P Lorenzo MT Bayliss D Heinegard, J Biol Chem 1998 273 23463 23468 10.1074/jbc.273.36.23463 9722583
41. Up-regulation of cartilage oligomeric matrix protein at the onset of articular cartilage degeneration in a transgenic mouse model of osteoarthritis. H Salminen Perala P Lorenzo T Saxne D Heinegard AM Saamanen E Vuorio, Arth Rheum 2000 43 1742 1748 10.1002/1529-0131(200008)43:8<1742::AID-ANR103.0.CO;2-U
42. The mechanosensitivity of cartilage oligomeric protein (COMP). P Giannoni M Siegrist EB Hunziker M Wong, Biorheology 2003 40 101 109 12454393
43. One of two chondrocyte-expressed isoforms of cartilage intermediate-layer protein functions as an insulin-like growth factor 1 antagonist. K Johnson D Farley S Hu R Terkeltaub, Arth Rheum 2003 48 1302 1314 10.1002/art.10927 (Pubitemid 36554529)
44. Cartilage oligomeric matrix protein is involved in human limb development and in the pathogenesis of osteoarthritis. S Koelling TS Clauditz M Kaste N Miosge, Arth Res Ther 2006 8 56 10.1186/ar1922
45. The distribution of cartilage oligomeric matrix protein (COMP) in equine carpal articular cartilage and its variation with exercise and cartilage deterioration. RC Murray RK Smith FMD Henson A Goodship, Vet J 2001 162 121 128 10.1053/tvjl.2001.0590 11531396
46. The influence of mechanical compression on the induction of osteoarthritis-related biomarkers in articular cartilage explants. JL Piscoya B Fermor VB Kraus TV Stabler F Guilak, Osteoarthritis and Cartilage 2005 13 1092 1099 10.1016/j.joca.2005.07.003 16168680 (Pubitemid 41672507)
47. Increased degradation and altered tissue distribution of cartilage oligomeric matrix protein in human rheumatoid and osteoarthritic cartilage. PE DiCesare CS Carlson ES Stolerman N Hauser H Tulli M Paulsson, Journal of Orthopaedic Research 1996 14 946 955 10.1002/jor.1100140615 8982138
48. Hypoxia-inducible factor 2 is essential for hypoxic induction of the human articular chondrocyte phenotype. JE Lafont S Talma CL Murphy, Arth Rheum 2007 56 3297 3306 10.1002/art.22878 (Pubitemid 47585424)
49. The tenascin-C knockout mouse revisited. EJ Mackie RP Tucker, Journal of Cell Science 1999 112 3847 3853 10547346
50. Connective tissues: signaling by tenascins. R Chiquet-Ehrismann RP Tucker, The International Journal of Biochemistry & Cell Biology 2004 36 1085 1089 10.1016/j.biocel.2004.01.007 15094123
51. Meet the tenascins: multifunctional and mysterious. HC Hsai JE Schwarzbauer, The Journal of Biochemistry 2005 250 26641 26644
52. Regional and cellular distribution of the extracellular matrix protein tenascin-C in the chick forebrain and its role in neonatal learning. M Metzger S Bartsch U Bartsch J Bock M Schachner K Braun, Neuroscience 2006 141 1709 1719 10.1016/j.neuroscience.2006.05.025 16797128
53. Expression of Tenascin in joint-associated tissues during development and postnatal growth. EJ Mackie S Ramsey, Journal of Anatomy 1996 188 157 165 8655402
54. The role of Tenascin-C and related glycoproteins in early chondrogenesis. EJ Mackie LI Murphy, Microscopy Research and Technique 1998 43 102 110 10.1002/(SICI)1097-0029(19981015)43:2<102::AID-JEMT33.0.CO;2-T 9822997
55. Tenascin and aggrecan expression by articular chondrocytes is influence by interleukin 1: a possible explanation for the changes in matrix synthesis during osteoarthritis. D Pfander N Heinz P Rothe H-D Carl B Swoboda, Ann Rheum Dis 2004 63 240 244 14962956 10.1136/ard.2002.003749 (Pubitemid 38250664)
56. Cell surface glycoprotein of reactive stromal fibroblasts as a potential antibody target in human epithelial cancers. P Garin-Chesa LJ Old WJ Rettig, PNAS USA 1990 87 7235 7239 2402505 10.1073/pnas.87.18.7235
57. Fibroblast activation protein alpha is expressed by chondrocytes following a pro-inflammatory stimulus and is elevated in osteoarthritis. JM Milner L Kevorkian DA Young D Jones R Wait ST Donell E Barksby AM Patterson J Middleton BF Cravatt IM Clark AD Rowan TE Cawston, Arthritis Research & Therapy 2006 8 1 23 16507127 10.1186/ar1877
58. Tyrosine-rich acidic matrix protein (TRAMP) is a tyrosine-sulphated and widely distributed protein of the extracellular matrix. EG Forbes AD Cronshaw JR MacBeath DJ Hulmes, FEBS Letters 1994 351 433 436 10.1016/0014-5793(94)00907-4 8082810
59. Dermatopontin, a novel player in the biology of the extracellular matrix. O Okamoto S Fujiwara, Connective Tissue Research 2006 47 177 189 10.1080/03008200600846564 16987749
60. Gene expression during redifferentiation of human articular chondrocytes. T Tallheden C Karlsson A Brunner J Van Der Lee R Hagg R Tommasini A Lindahl, Osteoarthritis and Cartilage 2004 12 525 535 10.1016/j.joca.2004.03.004 15219567
61. Roles of COX-2 and iNOS in the bony repair of the injured growth plate cartilage. G Arasapam M Scherer JC Cool BK Foster CJ Xian, Journal of Cellular Biochemistry 2006 99 450 461 10.1002/jcb.20905 16619262
62. S-100 protein immunostaining identifies cells expressing a chondrocytic phenotype during articular cartilage repair. DA Wolff S Stavenson VM Goldberg, Journal of Orthopaedic Research 1992 10 49 57 10.1002/jor.1100100106 1370178
63. Gene expression in human chondrocytes in late OA is changed in both fibrillated and intact cartilage without evidence of generalised chondrocytes hypertrophy. CJ Brew PD Clegg RP Boot-Handford G Andrews T Hardingham, Ann Rheum Dis 2009 0 ard.2008.097139v1[epub]