Immunogenetics and Mapping Immunological Functions

Avian Immunology

Volumn , Issue , 2008, Pages 223-240

  Lamont, Susan J ^a   Dekkers, Jack C M ^a   Burnside, Joan ^b  

^a IOWA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF DELAWARE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 70349585408     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-012370634-8.50014-7     Document Type: Chapter

References (88)

1. L. Andersson (2001) Genetic dissection of phenotypic diversity in farm animals. Nat. Rev. Genet 2 130-138.
2. L. Andersson and M. Georges (2004) Domestic-animal genomics: deciphering the genetics of complex traits. Nat. Rev. Genet 5 202-212.
3. M. Asif, K.A. Jenkins, L.S. Hilton, W.G. Kimpton, A.G. Bean and J.W. Lowenthal (2004) Cytokines as adjuvants for avian vaccines. Immunol. Cell. Biol 82 638-643.
4. C. Beaumont, G. Dambrine, A.M. Chausse and D. Flock (2003) Selection for disease resistance: conventional breeding for resistance to bacteria and viruses. W.M. Muir, S.E. Aggrey (Eds) In Poultry Genetics, Breeding and Biotechnology Oxon, UK: CAB International 357-384.
5. E.J. Black, T. Clair, J. Delrow, P. Neiman and D.A. Gillespie (2004) Microarray analysis identifies autotaxin, a tumour cell motility and angiogenic factor with lysophospholipase D activity, as a specific target of cell transformation by v-Jun. Oncogene 23 2357-2366.
6. T.W. Bliss, J.E. Dohms, M.G. Emara and C.L. Keeler Jr. (2005) Gene expression profiling of avian macrophage activation. Vet. Immunol. Immunopathol 105 289-299.
7. W.E. Briles, G.W. Mc and M.R. Irwin (1950) On multiple alleles effecting cellular antigens in the chicken. Genetics 35 633-652.
8. N. Bumstead (2003) Genetic resistance and transmission of avian bacteria and viruses. W.M. Muir, S.E. Aggrey (Eds) In Poultry Genetics, Breeding and Biotechnology Oxon, UK: CAB International 311-328.
9. J. Burnside, P. Neiman, J. Tang, R. Basom, R. Talbot, M. Aronszajn, D. Burt and J. Delrow (2005) Development of a cDNA array for chicken gene expression analysis. BMC Genomics 6 13.
10. D.W. Burt (2005) Chicken genome: current status and future opportunities. Genome Res 15 1692-1698.
11. H.H. Cheng (2003) Selection for disease resistance: molecular genetic techniques. W.M. Muir, S.E. Aggrey (Eds) In Poultry Genetics, Breeding and Biotechnology Oxon, UK: CAB International 385-398.
12. S. Cheng, M.E. Rothschild and S.J. Lamont (1991) Estimates of quantitative genetic parameters of immunological traits in the chicken. Poult. Sci 70 2023-2027.
13. J. Cui, L. Sofer, S.S. Cloud and J. Burnside (2004) Patterns of gene expression in the developing chick thymus. Dev. Dynam 229 480-488.
14. R.A. Dalloul, T.W. Bliss, Y.H. Hong, I. Ben-Chouikha, D.W. Park, C.L. Keeler and H.S. Lillehoj (2007) Unique responses of the avian macrophage to different species of Eimeria. Mol. Immunol 44 558-566.
15. A. Dar, S. Munir, S. Vishwanathan, A. Manuja, P. Griebel, S. Tikoo, H. Townsend, A. Potter, V. Kapur and L.A. Babiuk (2005) Transcriptional analysis of avian embryonic tissues following infection with avian infectious bronchitis virus. Virus Res 110 41-55.
16. A. Darvasi and M. Souer (1995) Advanced intercross lines, an experimental population for fine genetic mapping. Genetics 141 1199-1207.
17. W.G. Degen, T. Jansen and V.E. Schijns (2003) Vaccine adjuvant technology: from mechanistic concepts to practical applications. Expert Rev. Vaccines 2 327-335.
18. J.C. Dekkers (2004) Commercial application of marker and gene-assisted selection in livestock: strategies and lessons. J. Anim. Sci 82(E-Suppl.), E313-E328.
19. J.C.M. Dekkers and E Hospital (2001) The use of molecular genetics in improvement of agricultural populations. Nat. Rev. Genet 3 22-32.
20. D.J. de Koning, O. Carlborg and C.S. Haley (2005) The genetic dissection of immune response using gene-expression studies and genome mapping. Vet. Immunol. Immunopathol 105 343-352.
21. M.E. De Vries, A.K. Alyson, L. Xu, R. Longsi, J. Robinson and D.J. Kelvin (2005) Defining the origins and evolution of the chemokines/chemokines receptor system. J. Immunol 176 401-415.
22. M. Doyle and M.C. Erickson (2006) Reducing the carriage of foodborne pathogens in livestock and poultry. Poult. Sci 85 960-973.
23. E.A. Dunnington, R.W. Briles, W.E. Briles, W.B. Gross and E.B. Siegel (1984) Allelic frequencies in eight alloantigen systems of chickens selected for high and low antibody response to sheep red blood cells. Poult. Sci 63 1470-1472.
24. E.A. Dunnington, P.B. Siegel and W.B. Gross (1991) Escherichia coli challenge in chickens selected for high or low antibody response and differing in haplotypes at the major histocompatibility complex. Avian Dis 35 937-940.
25. R.L. Fernando and L.R. Totir (2004) Incorporating molecular information in breeding programs: methodology. W.M. Muir, S.E. Aggrey (Eds) In Poultry Genetics, Breeding and Biotechnology Oxon, UK: CAB International
26. M.E. Goddard and T.H.E. Meuwissen (2005) The use of linkage disequilibrium to map quantitative trait loci. Aust. J. Exp. Agric 45 837-845.
27. W.G. Gross, P.B. Siegel, R.W. Hall, C.H. Domermuth and R.T. DuBoise (1980) Production and persistence of antibodies in chickens to sheeperythrocytes. 2 Resistance to infectious diseases. Poult. Sci 59 205-210.
28. J.R. Hasenstein, G. Zhang and S.J. Lamont (2006) Analyses of five gaUinacingenes and the Salmonella enterica serovar Enteritidis response in poultry. Infect. Immun 74 3375-3380.
29. E.M. Heifetz, J.E. Fulton, N. O'Sullivan, H. Zhao, J.C. Dekkers and M. Soller (2005) Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations. Genetics 171 1173-1181.
30. L.W. Hiuier, W. Miller, E. Birney, et al. (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432 695-716.
31. P. Hocking (2005) Review of QTL mapping results in chickens. Wld. Poult. Sci. J 61 215-226.
32. S.J. Hubbard, D.V. Grafham, K.J. Beattie, et al. (2005) Transcriptome analysis for the chicken based on 19, 626 finished cDNA sequences and 485, 337 expressed sequence tags. Genome Res 15 174-183.
33. H.N. Kadarmideen, L.L. Janss and J.C. Dekkers (2000) Power of quantitative trait locus mapping for polygenic binary traits using generalized and regression interval mapping in multi-family half-sib designs. Genet. Res 76 305-317.
34. M.G. Kaiser and S.J. Lamont (2002) Microsatellites linked to Salmonella enterica serovar Enteritidis burden in spleen and cecal content of young F1 broiler-cross chicks. Poult. Sci 81 657-663.
35. P. Kaiser, T.Y. Poh, L. Rothwell, S. Avery, S. Balu, U.S. Pathania, S. Hughes, M. Goodchild, S. Morrell, M. Watson, N. Bumstead, J. Kaufman and J.R. Young (2005) A genomic analysis of chicken cytokines and chemokines. J. Interferon Cytokine Res 25 467-484.
36. G. Karaca, J. Anobile, D. Downs, J. Burnside and C.J. Schmidt (2004) Herpesvirus of turkeys: microarray analysis of host gene responses to infection. Virology 318 102-111.
37. J. Kaufman, S. Milne, T.W. Gobel, B.A. Walker, J.P. Jacob, C. Auffray, R. Zoorob and S. Beck (1999) The chicken B locus is a minimal essential major histocompatibility complex. Nature 401 923-925.
38. R.P. Kean, W.E. Briles, A. Cahaner, A.E. Freeman and S.J. Lamont (1994) Differences in major histocompatibility complex frequencies after multitrait, divergent selection for immunocompetence. Poult. Sci 73 7-17.
39. J.H. Ko, A. Takada, T. Mitsuhashi, T. Agui and T. Watanabe (2004) Native antiviral specificity of chicken Mx protein depends on amino acid variation at position 631. Anim. Genet 35 119-122.
40. S.J. Lamont (1998) Impact of genetics on disease resistance. Poult. Sci 77 1111-1118.
41. S.J. Lamont (2004) Genetic approaches to improving health in poultry. Poult. Int 43 10-15.
42. S.J. Lamont (2006) Integrated, whole-genome approaches to enhance disease resistance in poultry. In 8th World Congress Genetics Applied to Livestock Production Brazil: Belo Horizonte 13-18 August, published as a CD
43. S.J. Lamont, M.H. Pinard-van der Laan, A. Cahaner, J.J. van der Poel and H.K. Parmentier (2003) Selection for disease resistance: direct selection on the immune response. W.M. Muir, S.E. Aggrey (Eds) In Poultry Genetics, Breeding and Biotechnology Oxford, UK: CAB International 399-418.
44. G. Leitner, Z. Uni, A. Cahaner, M. Gutman and E.D. Heller (1992) Replicated divergent selection of broiler chickens for high or low early antibody response to Escherichia coli vaccination. Poult. Sci 71 27-37.
45. A.M. Levy, O. Gilad, L. Xia, Y. Izumiya, J. Choi, A. Tsalenko, Z. Yakhini, R. Witter, L. Lee, C.J. Cardona and H.J. Kung (2005) Marek's disease virus Meq transforms chicken cells via the v-Jun transcriptional cascade: a converging transforming pathway for avian oncoviruses. Proc. Natl. Acad. Sci. USA 102 14831-14836.
46. X.Y. Li, L.J. Qu, J.E. Yao and N. Yang (2006) Skewed allele frequencies of an Mx gene mutation with potential resistance to avian influenza virus in different chicken populations. Poult. Sci 85 1327-1329.
47. H.C. Liu, H.H. Cheng, V. Tirunagaru, L. Sofer and J. Burnside (2001) A strategy to identify positional candidate genes conferring Marek's disease resistance by integrating DNA microarrays and genetic mapping. Anim. Genet 32 351-359.
48. P. Mariani, P.A. Barrow, H.H. Cheng, M.M. Groenen, R. Negrini and N. Bumstead (2001) Localization to chicken chromosome 5 of a novel locus determining salmonellosis resistance. Immunogenetics 53 786-791.
49. A. Martin, W.B. Gross, E.A. Dunnington, R.W. Briles, W.E. Briles and P.B. Siegel (1986) Resistance to natural and controlled exposures to Eimeria tenella: genetic variation and alloantigen systems. Poult. Sci 65 1847-1852.
50. J.P. McElroy, J.C. Dekkers, J.E. Fulton, N.P. O'Sullivan, M. Soller, E. Lipkin, W. Zhang, K.J. Koehler, S.J. Lamont and H.H. Cheng (2005) Microsatellite markers associated with resistance to Marek's disease in commercial layer chickens. Poult. Sci 84 1678-1688.
51. J.P. McElroy, W. Zhang, K.L. Koehler, S.J. Lamont and J.C.M. Dekkers (2006) Comparison of methods for analysis of selectivegenotyping survival data. Genet. Select. Evol 38 637-655.
52. M.J. McGrew, A. Sherman, EM. Ellard, S.G. Lillico, H.J. Gilhooley, A.J. Kingsman, K.A. Mitrophanous and H. Sang (2004) Efficient production of germline transgenic chickens using lentiviral vectors. EMBO Rep 5 728-733.
53. T.H. Meuwissen and M.E. Goddard (2000) Fine mapping of quantitative trait loci using linkage disequilibria with closelylinked marker loci. Genetics 155 421-430.
54. M.M. Miller, C. Wang, E. Parisini, R.D. Coletta, R.M. Goto, S.Y. Lee, D.C. Barral, M. Townes, C. Roura-Mir, H.L. Ford, M.B. Brenner and C.C. Dascher (2005) Characterization of two avian MHC-like genes reveals an ancient origin of the CD1 family. Proc. Natl. Acad. Sci. USA 102 8674-8679.
55. W. Min, H.S. Lillehoj, S. Kim, J.J. Zhu, H. Beard, N. Alkharouf and B.E Matthews (2003) Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray. Appl. Microbiol. Biotechnol 62 392-399.
56. C.R. Moreno, J.M. Elsen, P. Le Roy and V. Ducrocq (2005) Interval mapping methods for detecting QTL affecting survival and time-to-event phenotypes. Genet. Res 85 139-149.
57. R.W. Morgan, L. Sofer, A.S. Anderson, E.L. Bernberg, J. Cui and J. Burnside (2001) Induction of host gene expression following infection of chicken embryo fibroblasts with oncogenic Marek's disease virus. J. Virol 75 533-539.
58. P.E. Mozdziak and J.N. Petitte (2004) Status of transgenic chicken models for developmental biology. Dev. Dynam 229 414-421.
59. S. Munir and V. Kapur (2003) Regulation of host cell transcriptional physiology by the avian pneumovirus provides key insights into host-pathogen interactions. J. Virol 77 4899-4910.
60. L. Naldini, U. Blomer, P. Gallay, D. Ory, R. Mulligan, EH. Gage, I.M. Verma and D. Trono (1996) In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272 263-267.
61. E.E. Neiman, A. Ruddell, C. Jasoni, G. Loring, S.J. Thomas, K.A. Brandvold, R. Lee, J. Burnside and J. Delrow (2001) Analysis of gene expression during myc oncogene-induced lymphomagenesis in the bursa of Fabricius. Proc. Natl. Acad. Sci. USA 98 6378-6383.
62. E.E. Neiman, J.J. Grbic, T.S. Polony, R. Kimmel, S.J. Bowers, J. Delrow and K.L. Beemon (2003) Functional genomic analysis reveals distinct neoplastic phenotypes associated with c-myb mutation in the bursa of Fabricius. Oncogene 22 1073-1086.
63. M.H. Pinard and A.J. van der Zijpp (1993) Effect of major histocompatibility complex types in F1 and F2 crosses of chicken lines selected for humoral immune responsiveness. Genet. Select. Evo/ 25 659-672.
64. M.H. Pinard, J.A. van Arendonk, M.G. Nieuwland and A.J. van der Zijpp (1992) Divergent selection for immune responsiveness in chickens: estimation of realized heritability with an animal model. J. Anita. Sci 70 2986-2993.
65. M.H. Pinard-van der Laan, P.B. Siegel and S.J. Lamont (1998) Lessons from selection experiments on immune response in the chicken. Poult. Biol. Rev 9 125-141.
66. A. Rebai (1997) Comparison of methods of regression interval mapping in QTL analysis with nonnormal traits. Genet. Res 69 69-74.
67. M.E. Rothschild and M. Soller (1997) Candidate gene analysis to detect genes controlling traits of economic importance in domestic livestock. Probe 8 13-20.
68. M.E Rothschild, L. Skow and S.J. Lamont (2000) The major histocompatibility complex and its role in disease resistance and immune responsiveness. R.E. Axford (Eds) In Breeding for Disease Resistance in Farm Animals Oxon, UK: CABI Press 73-105.
69. L.W. Schierman and A.W. Nordskog (1961) Relationship of blood type to histocompatibility in chickens. Science 134 1008-1009.
70. L.B. Schook and S.J. Lamont (1996) The Major Histocompatibility Complex in Domestic Animal Species Boca Raton, FL: CRC Press
71. B.B. Scott and C. Lois (2005) Generation of tissue-specific transgenic birds with lentiviral vectors. Proc. Natl. Acad. Sci. USA 102 16443-16447.
72. P.B. Siegel and W.B. Gross (1980) Production and persistence of antibodies in chickens to sheep erythrocytes. 1. Directional selection. Poult. Sci 59 205-210.
73. M. Siwek, S.J. Cornelissen, M.G. Nieuwland, A.J. Buitenhuis, H. Bovenhuis, R.E Crooijmans, M.A. Groenen, G. de Vries-Reilingh, H.K. Parmentier and J.J. van der Poel (2003) Detection of QTL for immune response to sheep red blood cells in laying hens. Anim. Genet 34 422-428.
74. J. Smith, D. Speed, A.S. Law, E.J. Glass and D.W. Burt (2004) In-silico identification of chicken immune-related genes. Immunogenetics 56 122-133.
75. P. Staeheli, O. Hailer, W. Boll, J. Lindenmann and C. Weissmann (1986) Mx protein: constitutive expression in 3T3 cells transformed with cloned Mx cDNA confers selective resistance to influenza virus. Cell 44 147-158.
76. P. Staeheli, E Puehler, K. Schneider, T.W. Gobel and B. Kaspers (2001) Cytokines of birds: conserved functions a largely different look. J. Interferon Cytokine Res 21 993-1010.
77. P. Tilquin, EA Barrow, J. Marly, E Pitel, E Plisson-Petit, P. Velge, A. Vignal, P.V. Baret, N. Bumstead and C. Beaumont (2005) A genome scan for quantitative trait loci affecting the Salmonella carrier state in the chicken. Genet. Select. Evol 37 539-561.
78. M.C. van de Lavoir, J.H. Diamond, P.A. Leighton, C. Mather-Love, B.S. Heyer, R. Bradshaw, A. Kerchner, L.T. Hooi, T.M. Gessaro, S.E. Swanberg, M.E. Delany and R.J. Etches (2006) Germline transmission of genetically modified primordial germ cells. Nature 441 766-769.
79. M.C. van de Lavoir, C. Mather-Love, P. Leighton, J.H. Diamond, B.S. Heyer, R. Roberts, L. Zhu, P. Winters-Digiacinto, A. Kerchner, T. Gessaro, S. Swanberg, M.E. Delany and R.J. Etches (2006) High-grade transgenic somatic chimeras from chicken embryonic stem cells. Mech. Dev 123 31-41.
80. J.I. Weller (2001) Quantitative Trait Loci Analysis in Animals Wallingford, UK: CABI Publishing
81. G.K. Wong, B. Liu, J. Wang, et al. (2004) A genetic variation map for chicken with 2.8 million single nucleotide polymorphisms. Nature 432 717-722.
82. X. Ye, S. Avendano, J.C.M. Dekkers and S.J. Lamont (2006) Association of twelve immune-related genes with performance of three broiler lines in two different hygiene environments. Poult. Sci 85 1555-1569.
83. N. Yonash, L.D. Bacon, R.L. Witter and H.H. Cheng (1999) High resolution mapping and identification of new quantitative trait loci (QTL) affecting susceptibility to Marek's disease. Anim. Genet 30 126-135.
84. N. Yonash, M.G. Kaiser, E.D. Heller, A. Cahaner and S.J. Lamont (1999) Major histocompatibility complex (MHC) related cDNA probes associated with antibody response in meat-type chickens. Anim. Genet 30 92-101.
85. N. Yonash, H.H. Cheng, J. Hillel, D.E. Heller and A. Cahaner (2001) DNA microsatellites linked to quantitative trait loci affecting antibody response and survival rate in meat-type chickens. Poult. Sci 80 22-28.
86. H. Zhou, H. Li and S.J. Lamont (2003) Genetic markers associated with antibody response kinetics in adult chickens. Poult. Sci 82 699-708.
87. J.J. Zhu, H.S. Lillehoj, P.C. Allen, C.P. Van Tassell, T.S. Sonstegard, H.H. Cheng, D. Pollock, M. Sadjadi, W. Min and M.G. Emara (2003) Mapping quantitative trait loci associated with resistance to coccidiosis and growth. Poult. Sci 82 9-16.
88. L. Zhu, M.C. van de Lavoir, J. Albanese, et al. (2005) Production of human monoclonal antibody in eggs of chimeric chickens. Nat. Biotecbnol 23 1159-1169.