Patterns of Gene Expression the Developing Chick Thymus

Developmental Dynamics

Volumn 229, Issue 3, 2004, Pages 480-488

  Cui, Jing ^a   Soler, Luc ^a   Cloud, Sandra S ^a   Burnside, Joan ^a  

^a UNIVERSITY OF DELAWARE   (United States)

Author keywords

Chick; Clustering; Gene expression; Microarray; T cell development; Thymus

Indexed keywords

AMINO ACID; B LYMPHOCYTE RECEPTOR; BETA 2 MICROGLOBULIN; CD18 ANTIGEN; CD3 ANTIGEN; CD63 ANTIGEN; CD8 ANTIGEN; COMPLEMENT RECEPTOR; COMPLEMENTARY DNA; CYCLOPHILIN A; CYTOKINE RECEPTOR; DEATH RECEPTOR 3; ELONGATION FACTOR 1ALPHA; ENOLASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HISTONE H3; INTERFERON CONSENSUS SEQUENCE BINDING PROTEIN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MESSENGER RNA; NUCLEOTIDE; PROTEIN; RECEPTOR; T LYMPHOCYTE RECEPTOR; TRANSCRIPTION FACTOR; UBIQUITIN; UNCLASSIFIED DRUG;

ANIMAL TISSUE; APOPTOSIS; ARTICLE; CELL MATURATION; CHICKEN; DNA MICROARRAY; GENE; GENE EXPRESSION; GENE REARRANGEMENT; GENE SEQUENCE; IMMUNE RESPONSE; NEWBORN; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; T LYMPHOCYTE; THYMUS;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, NORTHERN; CELL MEMBRANE; CHICK EMBRYO; CHICKENS; CLUSTER ANALYSIS; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HUMANS; IMMUNE SYSTEM; MOLECULAR SEQUENCE DATA; MUCOPROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID; T-LYMPHOCYTES; THYMUS GLAND;

EID: 1542378244     PISSN: 10588388     EISSN: None     Source Type: Journal    
DOI: 10.1002/dvdy.10462     Document Type: Article

References (40)

1. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, et al. 1997. Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252:1651-1656.
2. Andersson M, Gunne H, Agerberth B, Boman A, Bergman T, Sillard R, Jornvall H, Mutt V, Olsson B, Wigzell H. 1995. NK-lysin, a novel effector peptide of cytotoxic T and NK cells. Structure and cDNA cloning of the porcine form, induction by interleukin 2, antibacterial and antitumour activity. EMBO J 14:1615-1625.
3. Andersson M, Gunne H, Agerberth B, Boman A, Bergman T, Olsson B, Dagerlind A, Wigzell H, Boman HG, Gudmundsson GH. 1996. NK-lysin, structure and function of a novel effector molecule of porcine T and NK cells. Vet Immunol Immunopathol 54:123-126.
4. Andersson M, Girard R, Cazenave P. 1999. Interaction of NK lysin, a peptide produced by cytolytic lymphocytes, with endotoxin. Infect Immun 67:201-205.
5. Benson SJ, Ruis BL, Fadly AM, Conklin KF. 1998. The unique envelope gene of the subgroup J Avian Leukosis virus derives from ev/J proviruses, a novel family of avian endogenous viruses. J Virol 72:10157-10164.
6. Boehmelt G, Antonio L, Iscove NN. 1998. Cloning of the murine transcriptional corepressor component SAP18 and differential expression of its mRNA in the hematopoietic hierarchy. Gene 207:267-275.
7. Boman HG, 1995. Peptide antibiotics and their role in Innate immunity. Annu Rev Immunol 13:61-92.
8. Bucy RP, Li JM, Xu XY, Char D, Chen CL. 1990. Effect of cyclosporin A on the ontogeny of different T cell sublineages in chickens. J Immunol 144:3257-3265.
9. Cao X, Shores EW, Hu-Li J, Anver MR, Kelsall BL, Russell SM, Drago J, Noguchi M, Grinberg A, Bloom ET. 1995. Defective lymphold development in mice lacking expression of the common cytokine receptor gamma chain. Immunity 2:223-238.
10. Chan MM, Chen CH, Ager LL, Cooper MD. 1988. Identification of the avian homologs of mammalian CD4 and CD8 antigens. J Immunol 140:2133-2138.
11. Chen CH, Cihak J, Losch U, Cooper MD. 1988. Differential expression of two T cells receptors TCR1 and TCR2 on chicken lymphocytes. Eur J Immunol 18:539-543.
12. Cihak J, Ziegler-Heitbrock HWL, Trainer H, Schranner I, Merkenschlager M, Losch U. 1988. Characterization and functional properties of a novel monoclonal antibody which identifies a T cell receptor in chicken. Eur J Immunol 18:533-537.
13. Clissold PM, Ponting CP. 2001. JmjC: cupin metalloenzyme-like domains in jumonji, hairless and phospholipase A2β. Trends Biochem Sci 26:7-9.
14. Deblandre GA, Marinx OP, Evans SS, Majjaj S, Leo O, Caput D, Huez GA, Wathelet MG. 1995. Expression cloning of an interferon-inducible 17-kDa membrane protein implicated in the control of cell growth. J Biol Chem 270:23860-23866.
15. Der SD, Zhou A, Williams BRG, Silverman R. 1998. Identification of genes differentially regulated by interferon alpha, beta or gamma, using oligonucleotide arrays. Proc Natl Acad Sci U S A 95:15623-15628.
16. Dunon D, Courtois D, Vainio O, Six A, Chen CH, Cooper MD, Dangy JP, Imhof BA. 1997. Ontogeny of the immune system: gamma/delta and alpha/beta T cells migrate from thymus to the periphery in alternating waves. J Exp Med 186:977-988.
17. Ernst WA, Thoma-Uszynski S, Teitelbaum R, Ko C, Hanson DA, Clayberger C, Krensky AM, Leippe M, Bloom BR, Ganz T, Modlin RL. 2000. Granulysin, a T cell product, kills bacteria by altering membrane permeability. J Immunol 165:7102-7108.
18. Guillemot F, Auffray C. 1989a. Physical linkage of a guanine nucleotide-binding protein-related gene to the chicken major histocompatibility complex. Proc Natl Acad Sci U S A 86:4594-4599.
19. Guillemot F, Auffray C. 1989b. Molecular biology of the chicken major histocompatibility complex. Poultry Biol 2:255-275.
20. Jotereau FV, Houssaint E, Le Douarin NM. 1980. Lymphoid stem cell homing to the early thymic primordium of the avian embryo. Eur J Immunol 10:620-627.
21. Kherrouche Z, Beuscart A, Huguet C, Flourens A, Moreau-Gachelin F, Stehelin D, Coll J. 1998. Isolation and characterization of a chicken homologue of the Spi-1/PU.1 transcription factor. Oncogene 16:1357-1364.
22. Lewin AR, Reid LE, McMahon M, Stark GR, Kerr IM. 1991. Molecular analysis of a human interferon-inducible gene family. Eur J Biochem 199:417-423.
23. Lowenthal JW, Connick TE, McWaters PG, York JJ. 1994. Development of T cell immune responsiveness in the chicken. Immunol Cell Biol 72:115-112.
24. Nicola NA. 1994. Guidebook to cytokines and their receptors. 1st ed. New York; Oxford University Press.
25. Pena SV, Krensky AM. 1997. Granulysin, a new human cytolytic granule-associated protein with possible involvement in cell-mediated cytotoxicity. Semin Immunol 9:117-125.
26. Pink JR, Droege W, Hala K, Miggiano VC, Ziegler A. 1985. A monoclonal antibody against chicken MHC class I (B-F) antigens. Immunogenetics 21:293-297.
27. Pru JK, Austin KJ, Haas AL, Hansen TR. 2001. Pregnancy and interferon-tau upregulate gene expression of members of the 1-8 family in the bovine uterus. Biol Reprod 65:1471-1480.
28. Roitt I, Brostoff J, Male D. 1998. Immunology. 4th ed. London: Times Mirror International Publishers Limited.
29. Romanoff AL. 1967. Biochemistry of the avian embryo. New York: Interscience Publishers.
30. Screaton GR, Xu XN, Olsen AL, Cowper AE, Tan R, McMichael AJ, Bell JI. 1997. LARD: a new lymphoid-specific death domain containing receptor regulated by alternative pre-mRNA splicing. Proc Natl Acad Sci U S A 94:4615-4619.
31. Six A, Rast JP, McCormack WT, Dunon D, Courtois D, Li Y, Chen CH, Cooper MD. 1996. Characterization of avian T-cell receptor gamma genes. Proc Natl Acad Sci U S A 93:15329-15334.
32. Sowder JT, Chen CH, Ager LL, Cooper MD. 1988. A large subpopulation of avian T cells express a homologue of mammalian Tγδ receptor. J Exp Med 167:315-322.
33. Sugamura K, Asao H, Kondo M, Tanaka N, Ishii N, Ohbo K, Nakamura M, Takeshita T. 1996. The interleukin-2 receptor gamma chain: its role in the multiple cytokine receptor complexes and T cell development in XSCID. Annu Rev Immunol 14:179-205.
34. Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. 1999. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci U S A 96:2907-2912.
35. Tirunagaru V, Sofer L, Cui J, Burnside J. 2000. An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones. Genomics 66:144-151.
36. Vainio O, Lassila O. 1989. Chicken T cells: differentiation antigens and cell-cell interactions. Crit Rev Poultry Biol 2:97-102.
37. Wang ECY, Thern A, Denzel A, Kitson J, Farrow SN, Owen MJ. 2001. DR3 regulates negative selection during thymocytedevelopment. Mol Cell Biol 21:3451-3461.
38. Youn HD, Liu JO. 2000. Cabin1 represses MEF2-dependent Nur77 expression and T cell apoptosis by controlling association of histone deacetylases and acetylases with MEF2. Immunity 13:85-94.
39. Zhang Y, Iratni R, Erdjument-Bromage H, Tempst P, Reinberg D. 1997. Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell 89:357-364.
40. Zucchi I, Montagna C, Susani L, Vezzoni P, Dulbecco R. 1998. The rat gene homologous to the human gene 9-27 is involved in the development of the mammary gland. Proc Natl Acad Sci U S A 95:1079-1084.