Allosteric activation of pyruvate decarboxylases. A never-ending story?

Journal of Molecular Catalysis B: Enzymatic

Volumn 61, Issue 1-2, 2009, Pages 100-110

  König, Stephan ^a   Spinka, Michael ^a   Kutter, Steffen ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Activation kinetics; Conformation change; Regulatory site; Thiamine diphosphate; Yeast enzymes

Indexed keywords

ACTIVATION KINETICS; ACTIVE SITE; ALLOSTERIC ACTIVATION; CONFORMATION CHANGE; COVALENTLY BOUND; DECARBOXYLASES; HIGH-RESOLUTION STRUCTURES; KLUYVEROMYCES LACTIS; MECHANISTIC STUDIES; MOLECULAR MECHANISM; NEW MECHANISMS; PYRUVATE DECARBOXYLASE; PYRUVATES; REGULATORY SITE; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION PATHWAYS; SMALL-ANGLE X-RAYS; STRUCTURAL INSIGHTS; SUBSTRATE ACTIVATION; THIAMINE DIPHOSPHATE; WILD TYPES; X RAY CRYSTALS;

CATALYSTS; ENZYMES; LAWS AND LEGISLATION; SIGNAL TRANSDUCTION; YEAST;

SUBSTRATES;

PYRUVATE DECARBOXYLASE;

ALLOSTERISM; COMPLEX FORMATION; COVALENT BOND; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME KINETICS; ENZYME MECHANISM; ENZYME STRUCTURE; ENZYME SUBSTRATE; KLUYVEROMYCES; NONHUMAN; SACCHAROMYCES CEREVISIAE; SHORT SURVEY; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

KLUYVEROMYCES LACTIS; SACCHAROMYCES CEREVISIAE;

EID: 70349502403     PISSN: 13811177     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcatb.2009.02.010     Document Type: Short Survey

References (102)

1. Ozawa T., Satou Y., and Tomita I. Vitamins 45 (1972) 22-29
2. Ludewig R., and Schellenberger A. FEBS Lett. 45 (1974) 340-343
3. Farrenkopf B.C., and Jordan F. Prot. Expr. Purif. 3 (1992) 101-107
4. Sieber M., König S., Hübner G., and Schellenberger A. Biomed. Biochim. Acta 42 (1983) 343-349
5. Alvarez M.E., Rosa A.L., Temporini E.D., Wolstenholme A., Panzetta G., Patrito L., and Maccioni H.J.F. Gene 130 (1993) 253-258
6. Killenberg-Jabs M., König S., Hohmann S., and Hübner G. Biol. Chem. Hoppe-Seyler 377 (1996) 313-317
7. Lu G., Dobritzsch D., Baumann S., Schneider G., and König S. Eur. J. Biochem. 267 (2000) 861-868
8. Neuser F., Zorn H., Richter U., and Berger R.G. Biol. Chem. 381 (2000) 349-353
9. Krieger F., Spinka M., Golbik R., Hübner G., and König S. Eur. J. Biochem. 269 (2002) 3256-3263
10. Wang Q.H., He P., Lu D., Shen A., and Jiang N. J. Biochem. 136 (2004) 447-455
11. Acar S., Yucel M., and Hamamci H. Enzyme Microb. Technol. 40 (2007) 675-682
12. Oba K., and Uritani I. J. Biochem. 77 (1975) 1205-1213
13. Zehender H., Trescher D., and Ullrich J. Eur. J. Biochem. 167 (1987) 149-154
14. Leblova S., and Martinec L. Biologia (Bratislava) 42 (1987) 1181-1189
15. Rivoal J., Ricard B., and Pradet A. Eur. J. Biochem. 194 (1990) 791-797
16. Mücke U., König S., and Hübner G. Biol. Chem. Hoppe-Seyler 376 (1995) 111-117
17. Hoppner T.C., and Doelle H.W. Eur. J. Appl. Microbiol. Biotechnol. 17 (1983) 152-157
18. Miczka G., Vernau J., Kula M.R., Hofmann B., and Schomburg D. Biotechnol. Appl. Biochem. 15 (1992) 192-206
19. Lowe S.E., and Zeikus J.G. J. Gen. Microbiol. 138 (1992) 803-807
20. Talarico L.A., Ingram L.O., and Maupin-Furlow J.A. Microbiology 147 (2001) 2425-2435
21. Raj K.C., Ingram L.O., and Maupin-Furlow J.A. Arch. Microbiol. 176 (2001) 443-451
22. Candy J.M., Koga J., Nixon P.F., and Duggleby R.G. Biochem. J. 315 (1996) 745-751
23. Candy J.M., Nixon P.F., England R., Schenk G., Koga J., and Duggleby R.G. In: Bisswanger H., and Schellenberger A. (Eds). Biochem. Physiol. Thiamin Diphosphate Enzymes, Proc. Int. Meet. 4th, A. u. C. Intemann Wiss. Verl. Prien (1996) 82-102
24. Killenberg-Jabs M., König S., Eberhardt I., Hohmann S., and Hübner G. Biochemistry 36 (1997) 1900-1905
25. Schenk G., Leeper F.J., England P., and Duggleby R.G. Eur. J. Biochem. 248 (1997) 63-71
26. Pohl M., Siegert P., Mesch K., Bruhn H., and Grötzinger J. Eur. J. Biochem. 257 (1998) 538-546
27. Chang A.K., Nixon P.F., and Duggleby R.G. Biochem. J. 339 (1999) 255-260
28. Liu M., Sergienko E.A., Guo F.S., Wang J., Tittmann K., Hübner G., Furey W., and Jordan F. Biochemistry 40 (2001) 7355-7368
29. Sergienko E.A., and Jordan F. Biochemistry 40 (2001) 7369-7381
30. Huang C.Y., Chang A.K., Nixon P.F., and Duggleby R.G. Eur. J. Biochem. 268 (2001) 3558-3565
31. Kern D., Kern G., Neef H., Tittmann K., Killenberg-Jabs M., Wikner C., Schneider G., and Hübner G. Science 275 (1997) 67-70
32. Tittmann K., Golbik R., Uhlemann K., Khailova L., Schneider G., Patel M., Jordan F., Chipman D.M., Duggleby R.G., and Hübner G. Biochemistry 42 (2003) 7885-7891
33. Schütz A., Golbik R., König S., Hübner G., and Tittmann K. Biochemistry 44 (2005) 6164-6179
34. Schellenberger A., and Rödel W. Angew. Chem. 76 (1964) 226-2271964
35. Schellenberger A., and Winter K. Hoppe-Seylers Z. Physiol. Chem. 322 (1960) 164-172
36. Schellenberger A., and Winter K. Hoppe-Seylers Z. Physiol. Chem. 344 (1966) 16-24
37. Schellenberger A., Hanke H., and Hübner G. Hoppe-Seylers Z. Physiol. Chem. 349 (1968) 517-518
38. Schellenberger A., Heinroth I., and Hübner G. Hoppe-Seylers Z. Physiol. Chem. 348 (1967) 506-511
39. Schellenberger A., Hübner G., and Neef H. Methods Enzymol. 279 (1997) 131-146
40. Schellenberger A., Rödel W., and Rödel H. Hoppe-Seylers Z. Physiol. Chem. 339 (1964) 122-134
41. Schellenberger A., Thieme H., and Hübner G. Z. Chem. 9 (1969) 62
42. Schellenberger A., Wendler K., Creutzburg P., and Hübner G. Hoppe-Seylers Z. Physiol. Chem. 348 (1967) 501-505
43. Wittorf H.J., and Gubler C.J. Eur. J. Biochem. 22 (1971) 544-550
44. Neef H., Golbik R., Fahlbusch B., and Schellenberger A. Liebigs Ann. Chem. (1990) 913-916
45. Neef H., Kohnert K.D., and Schellenberger A. J. Prakt. Chem. 315 (1973) 701-710
46. Golbik R., Neef H., Hübner G., König S., Seliger B., Meshalkina L., Schellenberger A., and Kochetov G.A. Bioorg. Chem. 19 (1991) 10-17
47. Tomita I., Saitou S., and Ozawa T. Biochem. Biophys. Res. Commun. 57 (1974) 78-84
48. Eppendorfer S., König S., Golbik R., Neef H., Lehle K., Jaenicke R., Schellenberger A., and Hübner G. Biol. Chem. Hoppe-Seyler 374 (1993) 1129-1134
49. Mann S., Melero C.P., Hawksley D., and Leeper F.J. Org. Biomol. Chem. 2 (2004) 1732-1741
50. Erixon K.M., Dabalos C.L., and Leeper F.J. Chem. Commun. 9 (2007) 960-962
51. Breslow R. Ann. NY Acad. Sci. 98 (1962) 445-452
52. Lie M.A., Celik L., Jorgensen K.A., and Schiott B. Biochemistry 44 (2005) 14792-14806
53. Joseph E., Wei W., Tittmann K., and Jordan F. Biochemistry 45 (2006) 13517-13527
54. Wu Y.G., Chang A.K., Nixon P.F., Li W., and Duggleby R.G. Eur. J. Biochem. 267 (2000) 6493-6500
55. Kuo D.J., and Jordan F. Biochemistry 22 (1983) 3735-3739
56. Zeng X., Chung A., Haran M., and Jordan F. J. Am. Chem. Soc. 113 (1991) 5842-5849
57. Baburina I., Li H., Bennion B., Furey W., and Jordan F. Biochemistry 37 (1998) 1235-1244
58. Guo F.S., Zhang D.Q., Kahyaoglu A., Farid R.S., and Jordan F. Biochemistry 37 (1998) 13379-13391
59. Jordan F. FEBS Lett. 457 (1999) 298-301
60. Jordan F., Chen G., Nishikawa S., and Wu B.S. Ann. NY Acad. Sci. 378 (1982) 14-31
61. Baburina I., Gao Y., Hu Z., Jordan F., Hohmann S., and Furey W. Biochemistry 33 (1994) 5630-5635
62. Eberhardt I., Cederberg H., Li H., König S., Jordan F., and Hohmann S. Eur. J. Biochem. 262 (1999) 191-201
63. Li H., Furey W., and Jordan F. Biochemistry 38 (1999) 9992-10003
64. Li H., and Jordan F. Biochemistry 38 (1999) 10004-10012
65. Davies D.D. Proc. Biochem. Soc. 104 (1967) 50P
66. Hübner G., Fischer G., and Schellenberger A. Z. Chem. 10 (1970) 436-437
67. Boiteux A., and Hess B. FEBS Lett. 9 (1970) 293-296
68. Ullrich J., and Donner I. Hoppe-Seylers Z. Physiol. Chem. 351 (1970) 1026-1029
69. Hübner G., Weidhase R., and Schellenberger A. Eur. J. Biochem. 92 (1978) 175-181
70. König S., Hübner G., and Schellenberger A. Biomed. Biochim. Acta 49 (1990) 465-471
71. Dietrich A., and König S. FEBS Lett. 400 (1997) 42-44
72. Bringer-Meyer S., Schimz K.L., and Sahm H. Arch. Microbiol. 146 (1986) 105-110
73. Schütz A., Golbik R., Tittmann K., Svergun D.I., Koch M.H.J., Hübner G., and König S. Eur. J. Biochem. 270 (2003) 2322-2331
74. Biryukov A.I., Bunik V.I., Zhukov Y.N., Khurs E.N., and Khomutov R.M. FEBS Lett. 382 (1996) 167-170
75. Bunik V.I., Biryukov A.I., and Zhukov Y.N. FEBS Lett. 303 (1992) 197-201
76. Kluger R., and Nakaoka K. Biochemistry 13 (1974) 910-914
77. Kluger R., and Pike D.C. J. Am. Chem. Soc. 99 (1977) 4504-4506
78. O'Brien T.A., Kluger R., Pike D.C., and Gennis R.B. Biochim. Biophys. Acta 613 (1980) 10-17
79. Arjunan P., Sax M., Brunskill A., Chandrasekhar K., Nemeria N., Zhang S., Jordan F., and Furey W. J. Biol. Chem. 281 (2006) 15296-15303
80. Bera A.K., Polovnikova L.S., Roestamadji J., Widlanski T.S., Kenyon G.L., McLeish M.J., and Hasson M.S. J. Am. Chem. Soc. 129 (2007) 4120-4121
81. Wille G., Meyer D., Steinmetz A., Hinze E., Golbik R., and Tittmann K. Nat. Chem. Biol. 2 (2006) 324-328
82. Brauner T., and Ullrich J. Hoppe-Seylers Z. Physiol. Chem. 353 (1972) 825-831
83. Hübner G., König S., and Schellenberger A. Biomed. Biochim. Acta 47 (1988) 9-18
84. Wang J., Golbik R., Seliger B., Spinka M., Tittmann K., Hübner G., and Jordan F. Biochemistry 40 (2001) 1755-1763
85. Wei W., Liu M., and Jordan F. Biochemistry 41 (2002) 451-461
86. Furey W., Arjunan P., Chen L., Dyda F., Umland T., Swaminathan S., Sax M., Jordan F., Farrenkopf B., Gao Y., and Zhang D. In: Bisswanger H., and Schellenberger A. (Eds). Biochem. Physiol. Thiamin Diphosphate Enzymes, Proc. Int. Meet. 4th, A. u. C. Intemann Wiss. Verl. Prien (1996) 103-124
87. Killenberg-Jabs M., Jabs A., Lilie H., Golbik R., and Hübner G. Eur. J. Biochem. 268 (2001) 1698-1704
88. Kutter S., Spinka M., Koch M.H.J., and König S. Prot. J. 26 (2007) 585-591
89. Furey W., Arjunan P., Chen L., Sax M., Guo F., and Jordan F. Biochim. Biophys. Acta 1385 (1998) 253-270
90. Dyda F., Furey W., Swaminathan S., Sax M., Farrenkopf B., and Jordan F. Biochemistry 32 (1993) 6165-6170
91. Kutter S., Wille G., Relle S., Weiss M.S., Hübner G., and König S. FEBS J. 273 (2006) 4199-4209
92. Dobritzsch D., König S., Schneider G., and Lu G. J. Biol. Chem. 273 (1998) 20196-20204
93. Schütz A., Sandalova T., Ricagno S., Hübner G., König S., and Schneider G. Eur. J. Biochem. 270 (2003) 2312-2321
94. Muller Y.A., Lindqvist Y., Furey W., Schulz G.E., Jordan F., and Schneider G. Structure 1 (1993) 95-103
95. Pletcher J., Sax M., Turano A., and Chang C.H. Ann. NY Acad. Sci. 378 (1982) 454-458
96. Hawkins C.F., Borges A., and Perham R.N. FEBS Lett. 255 (1989) 77-82
97. Hübner G., König S., Schellenberger A., and Koch M.H.J. FEBS Lett. 266 (1990) 17-20
98. Washabaugh M.W., and Jencks W.P. Biochemistry 27 (1988) 5044-5053
99. Crosby J., and Lienhard G.E. J. Am. Chem. Soc. 92 (1970) 5707-5716
100. Alvarez F.J., Ermer J., Hübner G., Schellenberger A., and Schowen R.L. J. Am. Chem. Soc. 117 (1995) 1678-1683
101. Sun S.X., Duggleby R.G., and Schowen R.L. J. Am. Chem. Soc. 117 (1995) 7317-7322
102. Frieden C. J. Biol. Chem. 245 (1970) 5788-5799