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Volumn 6, Issue , 2005, Pages

ASAP: Amplification, sequencing & annotation of plastomes

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA; CHLOROPLAST DNA; PRIMER DNA;

EID: 29244465496     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-176     Document Type: Article
Times cited : (58)

References (42)
  • 1
    • 84977296432 scopus 로고
    • Chloroplast DNA and molecular phylogeny
    • Palmer JD: Chloroplast DNA and molecular phylogeny. Bioessays 1985, 2(6):263-267.
    • (1985) Bioessays , vol.2 , Issue.6 , pp. 263-267
    • Palmer, J.D.1
  • 2
    • 1542368230 scopus 로고    scopus 로고
    • Plastid transformation in higher plants
    • Maliga P: Plastid transformation in higher plants. Annu Rev Plant Biol 2004, 55:289-313.
    • (2004) Annu. Rev. Plant. Biol. , vol.55 , pp. 289-313
    • Maliga, P.1
  • 3
    • 21344474571 scopus 로고    scopus 로고
    • Chloroplast genetic engineering: Recent advances and future perspectives
    • Grevich JJ, Daniell H: Chloroplast genetic engineering: Recent advances and future perspectives. Critical Reviews in Plant Sciences 2005, 24(2):83-107.
    • (2005) Critical Reviews in Plant Sciences , vol.24 , Issue.2 , pp. 83-107
    • Grevich, J.J.1    Daniell, H.2
  • 4
    • 18144428771 scopus 로고    scopus 로고
    • Breakthrough in chloroplast genetic engineering of agronomically important crops
    • Daniell H, Kumar S, Dufourmantel N: Breakthrough in chloroplast genetic engineering of agronomically important crops. Trends Biotechnol 2005, 23(5):238-245.
    • (2005) Trends Biotechnol. , vol.23 , Issue.5 , pp. 238-245
    • Daniell, H.1    Kumar, S.2    Dufourmantel, N.3
  • 5
    • 21344459890 scopus 로고    scopus 로고
    • Chloroplast genetic engineering via organogenesis or somatic embryogenesis
    • Edited by Salinas J, Sanchez-Serrano JJ, Second edn. Totowa, New Jersey: Humana Press
    • Dhingra A, Daniell H: Chloroplast genetic engineering via organogenesis or somatic embryogenesis. In: Arabidopsis Protocols. Edited by Salinas J, Sanchez-Serrano JJ, vol. 323, Second edn. Totowa, New Jersey: Humana Press; 2005: 525.
    • (2005) Arabidopsis Protocols , vol.323 , pp. 525
    • Dhingra, A.1    Daniell, H.2
  • 6
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S: Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 1999, 6(5):283-290.
    • (1999) DNA Res. , vol.6 , Issue.5 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 7
    • 0036726451 scopus 로고    scopus 로고
    • The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: The role of RNA editing in generating divergence in the process of plant speciation
    • Schmitz-Linneweber C, Regel R, Du TG, Hupfer H, Herrmann RG, Maier RM: The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. Mol Biol Evol 2002, 19(9):1602-1612.
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.9 , pp. 1602-1612
    • Schmitz-Linneweber, C.1    Regel, R.2    Du, T.G.3    Hupfer, H.4    Herrmann, R.G.5    Maier, R.M.6
  • 8
    • 0024674380 scopus 로고
    • The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
    • Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Honji Y, Sun CR, Meng BY et al: The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet 1989, 217(2-3):185-194.
    • (1989) Mol. Gen. Genet. , vol.217 , Issue.2-3 , pp. 185-194
    • Hiratsuka, J.1    Shimada, H.2    Whittier, R.3    Ishibashi, T.4    Sakamoto, M.5    Mori, M.6    Kondo, C.7    Honji, Y.8    Sun, C.R.9    Meng, B.Y.10
  • 9
    • 0035082732 scopus 로고    scopus 로고
    • The plastid chromosome of spinach (Spinacea oleracea): Complete nucleotide sequence and gene organization
    • Schmitz-Linneweber C, Maier RM, Alcaraz JP, Cottet A, Herrmann RG, Mache R: The plastid chromosome of spinach (Spinacea oleracea): complete micleotide sequence and gene organization. Plant Mol Biol 2001, 45(3):307-315.
    • (2001) Plant Mol. Biol. , vol.45 , Issue.3 , pp. 307-315
    • Schmitz-Linneweber, C.1    Maier, R.M.2    Alcaraz, J.P.3    Cottet, A.4    Herrmann, R.G.5    Mache, R.6
  • 12
    • 0034739889 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of a legume
    • Kato T, Kaneko T, Sato S, Nakamura Y, Tabata S: Complete structure of the chloroplast genome of a legume, Lotus japonicus. 2000, 7(6):323-330.
    • (2000) Lotus Japonicus , vol.7 , Issue.6 , pp. 323-330
    • Kato, T.1    Kaneko, T.2    Sato, S.3    Nakamura, Y.4    Tabata, S.5
  • 13
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier RM, Neckermann K, Igloi GL, Kossel H: Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol 1995, 251(5):614-628.
    • (1995) J. Mol. Biol. , vol.251 , Issue.5 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kossel, H.4
  • 14
    • 11144284040 scopus 로고    scopus 로고
    • Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants
    • Kim KJ, Lee HL: Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Res 2004, 11(4):247-261.
    • (2004) DNA Res. , vol.11 , Issue.4 , pp. 247-261
    • Kim, K.J.1    Lee, H.L.2
  • 15
    • 27144516495 scopus 로고    scopus 로고
    • Complete chloroplast genome sequence of Glycine max and comparative analyses with other legume genomes
    • Saski C, Lee SB, Daniell H, Wood TC, Tomkins J, Kim HG, Jansen RK: Complete chloroplast genome sequence of Glycine max and comparative analyses with other legume genomes. 2005, 59(2):309-322.
    • (2005) , vol.59 , Issue.2 , pp. 309-322
    • Saski, C.1    Lee, S.B.2    Daniell, H.3    Wood, T.C.4    Tomkins, J.5    Kim, H.G.6    Jansen, R.K.7
  • 16
    • 11144263232 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: A comparative analysis of four monocot chloroplast genomes
    • Asano T, Tsudzuki T, Takahashi S, Shimada H, Kadowaki K: Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes. DNA Res 2004, 11(2):93-99.
    • (2004) DNA Res. , vol.11 , Issue.2 , pp. 93-99
    • Asano, T.1    Tsudzuki, T.2    Takahashi, S.3    Shimada, H.4    Kadowaki, K.5
  • 18
    • 0037572306 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L
    • Wolf PG, Rowe CA, Sinclair RB, Hasebe M: Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L. DNA Research 2003, 10(2):59-65.
    • (2003) DNA Research , vol.10 , Issue.2 , pp. 59-65
    • Wolf, P.G.1    Rowe, C.A.2    Sinclair, R.B.3    Hasebe, M.4
  • 19
    • 18144368560 scopus 로고    scopus 로고
    • Chloroplast genome phylogenetics: Why we need independent approaches to plant molecular evolution
    • Martin W, Deusch O, Stawski N, Grunheit N, Goremykin V: Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution. Trends Plant Sci 2005, 10(5):203-209.
    • (2005) Trends Plant Sci. , vol.10 , Issue.5 , pp. 203-209
    • Martin, W.1    Deusch, O.2    Stawski, N.3    Grunheit, N.4    Goremykin, V.5
  • 20
    • 29244437723 scopus 로고    scopus 로고
    • http://www.flmnh.ufl.edu/deeptime/
  • 21
    • 29244481352 scopus 로고    scopus 로고
    • http://www.genome.clemson.edu/projects/Chloroplast/
  • 22
    • 29244486657 scopus 로고    scopus 로고
    • http://evogen.jgi.doe.gov/second_levels/chloroplasts/ jansen_project_home/chlorosite.html
  • 24
    • 29244433387 scopus 로고    scopus 로고
    • http://bugmaster.jgi-psf.org/dogma/
  • 25
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL: Automatic annotation of organellar genomes with DOGMA. Bioinformatics 2004, 20(17):3252-3255.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 26
    • 0022294484 scopus 로고
    • Comparative organization of chloroplast genomes
    • Palmer JD: Comparative organization of chloroplast genomes. Annu Rev Genet 1985, 19:325-354.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 325-354
    • Palmer, J.D.1
  • 27
    • 1542391587 scopus 로고    scopus 로고
    • Plastidic genome of higher plants and algae: Structure and function
    • Odintsova MS, Iurina NP: Plastidic genome of higher plants and algae: structure and function. Mol Biol (Mosk) 2003, 37(5):768-783.
    • (2003) Mol. Biol. (Mosk.) , vol.37 , Issue.5 , pp. 768-783
    • Odintsova, M.S.1    Iurina, N.P.2
  • 29
    • 23944490730 scopus 로고    scopus 로고
    • Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa)
    • Folta KM, Staton M, Stewart PJ, Jung S, Bies DH, Jesudurai C, Main D: Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa). BMC Plant Biol 2005, 5(1):12.
    • (2005) BMC Plant Biol. , vol.5 , Issue.1 , pp. 12
    • Folta, K.M.1    Staton, M.2    Stewart, P.J.3    Jung, S.4    Bies, D.H.5    Jesudurai, C.6    Main, D.7
  • 30
    • 0033844893 scopus 로고    scopus 로고
    • S1 analysis of long PCR heteroduplexes: Detection of chloroplast indel polymorphisms in Fragaria
    • Lin J, Davis TM: S1 analysis of long PCR heteroduplexes: detection of chloroplast indel polymorphisms in Fragaria. Theoretical and Applied Genetics 2000, 101(3):415-420.
    • (2000) Theoretical and Applied Genetics , vol.101 , Issue.3 , pp. 415-420
    • Lin, J.1    Davis, T.M.2
  • 31
    • 4444336532 scopus 로고    scopus 로고
    • Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance
    • Kumar S, Dhingra A, Daniell H: Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance. Plant Physiology 2004, 136(1):2843-2854.
    • (2004) Plant Physiology , vol.136 , Issue.1 , pp. 2843-2854
    • Kumar, S.1    Dhingra, A.2    Daniell, H.3
  • 32
    • 12444289959 scopus 로고    scopus 로고
    • Stable transformation of the cotton plastid genome and maternal inheritance of transgenes
    • Kumar S, Dhingra A, Daniell H: Stable transformation of the cotton plastid genome and maternal inheritance of transgenes. Plant Molecular Biology 2004, 56(2):203-216.
    • (2004) Plant Molecular Biology , vol.56 , Issue.2 , pp. 203-216
    • Kumar, S.1    Dhingra, A.2    Daniell, H.3
  • 33
    • 0030918808 scopus 로고    scopus 로고
    • The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): Multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
    • Cosner ME, Jansen RK, Palmer JD, Downie SR: The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families. Curr Genet 1997, 31(5):419-429.
    • (1997) Curr. Genet. , vol.31 , Issue.5 , pp. 419-429
    • Cosner, M.E.1    Jansen, R.K.2    Palmer, J.D.3    Downie, S.R.4
  • 34
    • 0041834716 scopus 로고    scopus 로고
    • Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
    • Goremykin VV, Hirsch-Ernst KI, Wolfl S, Hellwig FH: Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol Biol Evol 2003, 20(9):1499-1505.
    • (2003) Mol. Biol. Evol. , vol.20 , Issue.9 , pp. 1499-1505
    • Goremykin, V.V.1    Hirsch-Ernst, K.I.2    Wolfl, S.3    Hellwig, F.H.4
  • 35
    • 27244457663 scopus 로고    scopus 로고
    • The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA flux
    • Matsuo M, Ito Y, Yamauchi R, Obokata J: The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA flux. Plant Cell 2005, 17(3):665-675.
    • (2005) Plant Cell , vol.17 , Issue.3 , pp. 665-675
    • Matsuo, M.1    Ito, Y.2    Yamauchi, R.3    Obokata, J.4
  • 36
    • 29244465996 scopus 로고    scopus 로고
    • http://www.ebi.ac.uk/clustalw/
  • 37
    • 0026580752 scopus 로고
    • The effects of plant polysaccharides and buffer additives on PCR
    • Demeke T, Adams RP: The effects of plant polysaccharides and buffer additives on PCR. Biotechniques 1992, 12(3):332-334.
    • (1992) Biotechniques , vol.12 , Issue.3 , pp. 332-334
    • Demeke, T.1    Adams, R.P.2
  • 39
    • 29244487307 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/blast/b12seq/wblast2.cgi
  • 40
    • 0032964297 scopus 로고    scopus 로고
    • Blast 2 Sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova TA, Madden TL: BLAST 2 SEQUENCES, a new tool for comparing protein and nucleotide sequences. Fems Microbiology Letters 1999, 174(2):247-250.
    • (1999) Fems Microbiology Letters , vol.174 , Issue.2 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 41
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang XQ, Madan A: CAP3: A DNA sequence assembly program. Genome Research 1999, 9(9):868-877.
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.Q.1    Madan, A.2
  • 42
    • 29244461287 scopus 로고    scopus 로고
    • http://genome.cs.mtu.edu/cap/cap3.html


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.