The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae)

PLoS ONE

Volumn 4, Issue 8, 2009, Pages

  Carpenter, Jennifer ^a   Hutter, Stephan ^b   Baines, John F ^b   Roller, Julia ^b   Saminadin Peter, Sarah S ^b,c   Parsch, John ^b   Jiggins, Francis M ^a,d  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF MUNICH   (Germany)

^c HARVARD MEDICAL SCHOOL   (United States)

^d UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CHORION PROTEIN; JANUS KINASE; PROTEIN; RIBOSOME PROTEIN; SERINE PROTEINASE; STAT PROTEIN; TOLL LIKE RECEPTOR; UNCLASSIFIED DRUG; PRIMER DNA;

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; FEMALE; GENE EXPRESSION; GENETIC VARIABILITY; HOST PATHOGEN INTERACTION; IMMUNE RESPONSE; MALE; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; REAL TIME POLYMERASE CHAIN REACTION; RHABDOVIRUS; SEX DIFFERENCE; UPREGULATION; VIRUS INFECTION; VIRUS REPLICATION; VIRUS TRANSMISSION; ANIMAL; DOWN REGULATION; GENETICS; IMMUNOLOGY; PATHOGENICITY; POLYMERASE CHAIN REACTION; VIROLOGY;

BACTERIA (MICROORGANISMS); DROSOPHILA MELANOGASTER; FUNGI; RHABDOVIRIDAE; RNA VIRUSES; SIGMA VIRUS;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; DOWN-REGULATION; DROSOPHILA MELANOGASTER; FEMALE; MALE; POLYMERASE CHAIN REACTION; RHABDOVIRIDAE; UP-REGULATION;

EID: 69949139908     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0006838     Document Type: Article

References (42)

1. Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, et al. (2007) A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder. 10.1126/science.1146498. Science 318: 283-287.
2. Jesús Genaro Sánchez-Martínez, Gabriel Aguirre-Guzmán, Humberto Mejía-Ruíz (2007) White Spot Syndrome Virus in cultured shrimp: A review. Aquaculture Research 38: 1339-1354.
3. Lemaitre B, Hoffmann J (2007) The Host Defense of Drosophila melanogaster. Annual Review of Immunology 25.
4. Brun G, Plus N (1980) The viruses of Drosophila. In: Ashburner M, Wright TRF, eds. The genetics and biology of Drosophila. New York: Academic Press. pp 625-702.
5. Cherry S, Perrimon N (2004) Entry is a rate-limiting step for viral infection in a Drosophila melanogaster model of pathogenesis. Nature Immunology 5: 81-87.
6. Ammar E-D, Tsai C-W, Whitfield AE, Redinbaugh MG, Hogenhout SA (2009) Cellular and Molecular Aspects of Rhabdovirus Interactions with Insect and Plant Hosts*. doi:10.1146/annurev.ento.54.110807090454. Annual Review of Entomology 54: 447-468.
7. Weber F, Wagner V, Rasmussen SB, Hartmann R, Paludan SR (2006) Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses 10.1128/JVI.80.10.5059-5064.2006. J Virol 80: 5059-5064.
8. Galiana-Arnoux D, Dostert C, Schneemann A, Hoffmann JA, Imler JL (2006) Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila. Nature Immunology 7: 590-597.
9. Wang XH, Aliyari R, Li WX, Li HW, Kim K, et al. (2006) RNA interference directs innate immunity against viruses in adult Drosophila. Science 312: 452-454.
10. Obbard DJ, Gordon KHJ, Buck AH, Jiggins FM (2009) The evolution of RNAi as a defence against viruses and transposable elements. Philosophical Transactions of the Royal Society B: Biological Sciences 364: 99-115.
11. Dostert C, Jouanguy E, Irving P, Troxler L, Galiana-Arnoux D, et al. (2005) The Jak-STAT signaling pathway is required but not sufficient for the antiviral response of drosophila. Nature Immunology 6: 946.
12. Roxstrom-Lindquist K, Terenius O, Faye I (2004) Parasite-specific immune response in adult Drosophila melanogaster: a genomic study. EMBO Rep 5: 207-212.
13. Zambon RA, Nandakumar M, Vakharia VN, Wu LP (2005) The Toll pathway is important for an antiviral response in Drosophila. PNAS 102: 7257-7262.
14. Avila A, Silverman N, Diaz-Meco MT, Moscat J (2002) The Drosophila Atypical Protein Kinase C-Ref(2)P Complex Constitutes a Conserved Module for Signaling in the Toll Pathway. Mol Cell Biol 22: 8787-8795.
15. Contamine D, Petitjean AM, Ashburner M (1989) Genetic-Resistance to Viral-Infection - the Molecular-Cloning of a Drosophila Gene That Restricts Infection by the Rhabdovirus-Sigma. Genetics 123: 525-533.
16. Carpenter JA, Obbard DJ, Maside X, Jiggins FM (2007) The recent spread of a vertically transmitted virus through populations of Drosophila melanogaster. Molecular Ecology 16: 3947-3954.
17. Fleuriet A (1988) Maintenance Of A Hereditary Virus - The Sigma-Virus In Populations Of Its Host, Drosophila-Melanogaster. Evolutionary Biology 23: 1-30.
18. Bangham J, Knott SA, Kim KW, Young RS, Jiggins FM (2008) Genetic variation affecting host-parasite interactions: major-effect quantitative trait loci affect the transmission of sigma virus in Drosophila melanogaster. Molecular Ecology 17: 3800-3807.
19. Bangham J, Kim KW, Webster CL, Jiggins FM (2008) Genetic variation affecting host-parasite interactions: Different genes affect different aspects of sigma virus replication and transmission in Drosophila melanogaster. Genetics 178: 2191-2199.
20. Tsai CW, McGraw EA, Ammar E-D, Dietzgen RG, Hogenhout SA (2008) Drosophila melanogaster Mounts a Unique Immune Response to the Rhabdovirus Sigma virus. Appl Environ Microbiol 74: 3251-3256.
21. Lewis EB (1960) A new standard food medium. Dros Inf Serv 34: 117-118.
22. Hutter S, Saminadin-Peter SS, Stephan W, Parsch J (2008) Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biology 9.
23. Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z (2006) CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. Nucleic Acids Research 34: W498-W503.
24. Townsend J, Hartl D (2002) Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biology 3: research0071.0071-research0071.0016.
25. Townsend JP (2004) Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. Bmc Bioinformatics 5.
26. Reimand J, Kull M, Peterson H, Hansen J, Vilo J (2007) g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Research 35: W193-W200.
27. Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, et al. (2008) Ensembl 2008. Nucleic Acids Research 36: D707-D714.
28. De Gregorio E, Spellman PT, Rubin GM, Lemaitre B (2001) Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. Proceedings of the National Academy of Sciences of the United States of America 98: 12590-12595.
29. Boutros M, Agaisse H, Perrimon N (2002) Sequential Activation of Signaling Pathways during Innate Immune Responses in Drosophila. Developmental Cell 3: 711-722.
30. Lemaitre B, Nicolas E, Michaut L, Reichhart J-M, Hoffmann JA (1996) The Dorsoventral Regulatory Gene Cassette spatzle/Toll/cactus Controls the Potent Antifungal Response in Drosophila Adults. Cell 86: 973-983.
31. De Gregorio E, Spellman PT, Tzou P, Rubin GM, Lemaitre B (2002) The Toll and Imd pathways are the major regulators of the immune response in Drosophila. 21: 2568-2579.
32. Wyers F, Petitjean AM, Dru P, Gay P, Contamine D (1995) Localization of domains within the Drosophila Ref(2)P protein involved in the intracellular control of sigma rhabdovirus multiplication. J Virol 69: 4463-4470.
33. Bischoff V, Vignal C, Duvic B, Boneca IG, Hoffmann JA, et al. (2006) Downregulation of the Drosophila immune response by peptidoglycan-recognition proteins SC1 and SC2. Plos Pathogens 2: 139-147.
34. Hurst GDD, Anbutsu H, Kutsukake M, Fukatsu T (2003) Hidden from the host: Spiroplasma bacteria infecting Drosophila do not cause an immune response, but are suppressed by ectopic immune activation. Insect Molecular Biology 12: 93-97.
35. Bourtzis K, Pettigrew MM, O'Neill SL (2000) Wolbachia neither surpresses nor induces antimicrobial peptides. Insect Molecular Biology 9: 635-639.
36. Whitlow ZW, Connor JH, Lyles DS (2006) Preferential translation of vesicular stomatitis virus mRNAs is conferred by transcription from the viral genome. Journal of Virology 80: 11733-11742.
37. Cherry S, Doukas T, Armknecht S, Whelan S, Wang H, et al. (2005) Genome-wide RNAi screen reveals a specific sensitivity of IRES-containing RNA viruses to host translation inhibition. Genes Dev 19: 445-452.
38. Kambris Z, Brun S, Jang I-H, Nam H-J, Romeo Y, et al. (2006) Drosophila Immunity: A Large-Scale In Vivo RNAi Screen Identifies Five Serine Proteases Required for Toll Activation. Current Biology 16: 808-813.
39. Spradling AC, Mahowald AP (1980) Amplification of Genes for Chorion Proteins During Oogenesis in Drosophila-Melanogaster. Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences 77: 1096-1100.
40. Gnad F, Parsch J (2006) Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression. Bioinformatics 22: 2577-2579.
41. McKean KA, Nunney L (2005) Bateman's principle and immunity: Phenotypically plastic reproductive strategies predict changes in immunological sex differences. Evolution 59: 1510-1517.
42. Baker DA, Meadows LA, Wang J, Dow JA, Russell S (2007) Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster. Bmc Genomics 8.