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Volumn 7, Issue 8, 2009, Pages

Role of translational coupling in robustness of bacterial chemotaxis pathway

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BIOINFORMATICS; CHEMOTAXIS; COMPUTER SIMULATION; ESCHERICHIA COLI; GENE EXPRESSION; NONHUMAN; BIOLOGICAL MODEL; BIOLOGY; ESCHERICHIA COLI K 12; GENE EXPRESSION REGULATION; GENE ORDER; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; METHODOLOGY; OPERON; PHYSIOLOGY; PROTEIN SYNTHESIS;

EID: 69349099313     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1000171     Document Type: Article
Times cited : (52)

References (47)
  • 2
    • 7944221332 scopus 로고    scopus 로고
    • Receptor clustering and signal processing in E. coli chemotaxis
    • DOI 10.1016/j.tim.2004.10.003, PII S0966842X04002343
    • Sourjik V (2004) Receptor clustering and signal processing in E. coli chemotaxis. Trends Microbiol 12: 569-576. (Pubitemid 39469906)
    • (2004) Trends in Microbiology , vol.12 , Issue.12 , pp. 569-576
    • Sourjik, V.1
  • 4
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • Barkai N, Leibler S (1997) Robustness in simple biochemical networks. Nature 387: 913-917.
    • (1997) Nature , vol.387 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 5
    • 0038637779 scopus 로고    scopus 로고
    • Perfect and near-perfect adaptation in a model of bacterial chemotaxis
    • Mello BA, Tu Y (2003) Perfect and near-perfect adaptation in a model of bacterial chemotaxis. Biophys J 84: 2943-2956. (Pubitemid 36531746)
    • (2003) Biophysical Journal , vol.84 , Issue.5 , pp. 2943-2956
    • Mello, B.A.1    Tu, Y.2
  • 7
    • 28544450485 scopus 로고    scopus 로고
    • Design principles of a bacterial signalling network
    • DOI 10.1038/nature04228, PII N04228
    • Kollmann M, Løvdok L, Bartholome K, Timmer J, Sourjik V (2005) Design principles of a bacterial signalling network. Nature 438: 504-507. (Pubitemid 41742022)
    • (2005) Nature , vol.438 , Issue.7067 , pp. 504-507
    • Kollmann, M.1    Lovdok, L.2    Bartholome, K.3    Timmer, J.4    Sourjik, V.5
  • 8
    • 0020509796 scopus 로고
    • Localization of the target site for translational regulation of the L11 operon and direct evidence for translational coupling in Escherichia coli
    • Baughman G, Nomura M (1983) Localization of the target site for translational regulation of the L11 operon and direct evidence for translational coupling in Escherichia coli. Cell 34: 979-988.
    • (1983) Cell , vol.34 , pp. 979-988
    • Baughman, G.1    Nomura, M.2
  • 9
    • 0023821284 scopus 로고
    • Structure and expression of the omp B operon, the regulatory locus for the outer membrane porin regulon in Salmonella typhimurium LT-2
    • DOI 10.1016/0022-2836(88)90465-2
    • Liljestrom P, Laamanen I, Palva ET (1988) Structure and expression of the ompB operon, the regulatory locus for the outer membrane porin regulon in Salmonella typhimurium LT-2. J Mol Biol 201: 663-673. (Pubitemid 18162686)
    • (1988) Journal of Molecular Biology , vol.201 , Issue.4 , pp. 663-673
    • Liljestrom, P.1    Laamanen, I.2    Palva, E.T.3
  • 10
    • 0019253694 scopus 로고
    • Translational coupling during expression of the tryptophan operon of Escherichia coli
    • Oppenheim DS, Yanofsky C (1980) Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics 95: 785-795. (Pubitemid 11128549)
    • (1980) Genetics , vol.95 , Issue.4 , pp. 785-795
    • Oppenheim, D.S.1    Yanofsky, C.2
  • 11
    • 0020371936 scopus 로고
    • Translational coupling at an intercistronic boundary of the Escherichia coli galactose operon
    • Schumperli D, McKenney K, Sobieski DA, Rosenberg M (1982) Translational coupling at an intercistronic boundary of the Escherichia coli galactose operon. Cell 30: 865-871. (Pubitemid 13204671)
    • (1982) Cell , vol.30 , Issue.3 , pp. 865-871
    • Schumperli, D.1    McKenney, K.2    Sobieski, D.A.3    Rosenberg, M.4
  • 13
    • 34047125290 scopus 로고    scopus 로고
    • Co-expression of signaling proteins improves robustness of the bacterial chemotaxis pathway
    • DOI 10.1016/j.jbiotec.2007.01.024, PII S0168165607001125
    • Lovdok L, Kollmann M, Sourjik V (2007) Co-expression of signaling proteins improves robustness of the bacterial chemotaxis pathway. J Biotechnol 129: 173-180. (Pubitemid 46529028)
    • (2007) Journal of Biotechnology , vol.129 , Issue.2 , pp. 173-180
    • Lovdok, L.1    Kollmann, M.2    Sourjik, V.3
  • 14
    • 2942584862 scopus 로고    scopus 로고
    • Diversity in chemotaxis mechanisms among the bacteria and archaea
    • DOI 10.1128/MMBR.68.2.301-319.2004
    • Szurmant H, Ordal GW (2004) Diversity in chemotaxis mechanisms among the bacteria and archaea. Microbiol Mol Biol Rev 68: 301-319. (Pubitemid 38756867)
    • (2004) Microbiology and Molecular Biology Reviews , vol.68 , Issue.2 , pp. 301-319
    • Szurmant, H.1    Ordal, G.W.2
  • 16
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • DOI 10.1126/science.1098641
    • Raser JM, O'Shea EK (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814. (Pubitemid 38787899)
    • (2004) Science , vol.304 , Issue.5678 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 17
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: Origins, consequences, and control
    • Raser JM, O'Shea EK (2005) Noise in gene expression: origins, consequences, and control. Science 309: 2010-2013.
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 19
    • 0028306907 scopus 로고
    • The mechanism of translational coupling in Escherichia coli: Higher order structure in the atpHA mRNA acts as a conformational switch regulating the access of de novo initiating ribosomes
    • Rex G, Surin B, Besse G, Schneppe B, McCarthy JE (1994) The mechanism of translational coupling in Escherichia coli. Higher order structure in the atpHA mRNA acts as a conformational switch regulating the access of de novo initiating ribosomes. J Biol Chem 269: 18118-18127. (Pubitemid 24982653)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.27 , pp. 18118-18127
    • Rex, G.1    Surin, B.2    Besse, G.3    Schneppe, B.4    McCarthy, J.E.G.5
  • 20
    • 2642677678 scopus 로고    scopus 로고
    • Mechanism of translational coupling in the nifLA operon of Klebsiella pneumoniae
    • DOI 10.1093/emboj/17.8.2368
    • Govantes F, Andujar E, Santero E (1998) Mechanism of translational coupling in the nifLA operon of Klebsiella pneumoniae. EMBO J 17: 2368-2377. (Pubitemid 28171921)
    • (1998) EMBO Journal , vol.17 , Issue.8 , pp. 2368-2377
    • Govantes, F.1    Andujar, E.2    Santero, E.3
  • 22
    • 0026808410 scopus 로고
    • Assembly of an MCP receptor, CheW, and kinase CheA complex in the bacterial chemotaxis signal transduction pathway
    • Gegner JA, Graham DR, Roth AF, Dahlquist FW (1992) Assembly of an MCP receptor, CheW, and kinase CheA complex in the bacterial chemotaxis signal transduction pathway. Cell 70: 975-982.
    • (1992) Cell , vol.70 , pp. 975-982
    • Gegner, J.A.1    Graham, D.R.2    Roth, A.F.3    Dahlquist, F.W.4
  • 24
    • 0037184003 scopus 로고    scopus 로고
    • Organization of the receptor-kinase signaling array that regulates Escherichia coli chemotaxis
    • Levit MN, Grebe TW, Stock JB (2002) Organization of the receptor-kinase signaling array that regulates Escherichia coli chemotaxis. J Biol Chem 277: 36748-36754.
    • (2002) J Biol Chem , vol.277 , pp. 36748-36754
    • Levit, M.N.1    Grebe, T.W.2    Stock, J.B.3
  • 25
    • 1842473065 scopus 로고    scopus 로고
    • Functional interactions between receptors in bacterial chemotaxis
    • DOI 10.1038/nature02406
    • Sourjik V, Berg HC (2004) Functional interactions between receptors in bacterial chemotaxis. Nature 428: 437-441. (Pubitemid 38419690)
    • (2004) Nature , vol.428 , Issue.6981 , pp. 437-441
    • Sourjik, V.1    Berg, H.C.2
  • 26
    • 58549087359 scopus 로고    scopus 로고
    • Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway
    • Kentner D, Sourjik V (2009) Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway. Mol Syst Biol 5: 238.
    • (2009) Mol Syst Biol , vol.5 , pp. 238
    • Kentner, D.1    Sourjik, V.2
  • 27
    • 0028869205 scopus 로고
    • The response regulators CheB and CheY exhibit competitive binding to the kinase CheA
    • Li J, Swanson RV, Simon MI, Weis RM (1995) The response regulators CheB and CheY exhibit competitive binding to the kinase CheA. Biochemistry 34: 14626-14636.
    • (1995) Biochemistry , vol.34 , pp. 14626-14636
    • Li, J.1    Swanson, R.V.2    Simon, M.I.3    Weis, R.M.4
  • 28
    • 36749094352 scopus 로고    scopus 로고
    • Input output robustness in simple bacterial signaling systems
    • Shinar G, Milo R, Martinez MR, Alon U (2007) Input output robustness in simple bacterial signaling systems. Proc Natl Acad Sci U S A 104: 19931-19935.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 19931-19935
    • Shinar, G.1    Milo, R.2    Martinez, M.R.3    Alon, U.4
  • 29
    • 58449118337 scopus 로고    scopus 로고
    • The organization of the bacterial genome
    • Rocha EP (2008) The organization of the bacterial genome. Annu Rev Genet 42: 211-233.
    • (2008) Annu Rev Genet , vol.42 , pp. 211-233
    • Rocha, E.P.1
  • 30
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • DOI 10.1038/nature01771
    • Papp B, Pal C, Hurst LD (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197. (Pubitemid 36858686)
    • (2003) Nature , vol.424 , Issue.6945 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 31
    • 0036008552 scopus 로고    scopus 로고
    • Exploring the etiology of haploinsufficiency
    • Veitia RA (2002) Exploring the etiology of haploinsufficiency. Bioessays 24: 175-184.
    • (2002) Bioessays , vol.24 , pp. 175-184
    • Veitia, R.A.1
  • 32
    • 25444488762 scopus 로고    scopus 로고
    • Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data
    • DOI 10.1186/1471-2164-6-84
    • Carpentier AS, Torresani B, Grossmann A, Henaut A (2005) Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data. BMC Genomics 6: 84. (Pubitemid 41357651)
    • (2005) BMC Genomics , vol.6 , pp. 84
    • Carpentier, A.-S.1    Torresani, B.2    Grossmann, A.3    Henaut, A.4
  • 33
    • 11344293422 scopus 로고    scopus 로고
    • Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
    • Jeong KS, Ahn J, Khodursky AB (2004) Spatial patterns of transcriptional activity in the chromosome of Escherichia coli. Genome Biol 5: R86.
    • (2004) Genome Biol , vol.5
    • Jeong, K.S.1    Ahn, J.2    Khodursky, A.B.3
  • 34
    • 0242440314 scopus 로고    scopus 로고
    • Gene organization: Selection, selfishness, and serendipity
    • Lawrence JG (2003) Gene organization: selection, selfishness, and serendipity. Annu Rev Microbiol 57: 419-440.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 419-440
    • Lawrence, J.G.1
  • 35
    • 34848825637 scopus 로고    scopus 로고
    • Chromatin remodelling is a major source of coexpression of linked genes in yeast
    • Batada NN, Urrutia AO, Hurst LD (2007) Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trends Genet 23: 480-484.
    • (2007) Trends Genet , vol.23 , pp. 480-484
    • Batada, N.N.1    Urrutia, A.O.2    Hurst, L.D.3
  • 36
    • 33748994704 scopus 로고    scopus 로고
    • Stochastic mRNA synthesis in mammalian cells
    • DOI 10.1371/journal.pbio.0040309
    • Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S (2006) Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4: e309. doi:10.1371/journal.pbio. 0040309. (Pubitemid 44610091)
    • (2006) PLoS Biology , vol.4 , Issue.10 , pp. 1707-1719
    • Raj, A.1    Peskin, C.S.2    Tranchina, D.3    Vargas, D.Y.4    Tyagi, S.5
  • 37
    • 34547519199 scopus 로고    scopus 로고
    • Evolution of chromosome organization driven by selection for reduced gene expression noise
    • Batada NN, Hurst LD (2007) Evolution of chromosome organization driven by selection for reduced gene expression noise. Nat Genet 39: 945-949.
    • (2007) Nat Genet , vol.39 , pp. 945-949
    • Batada, N.N.1    Hurst, L.D.2
  • 38
    • 0019979301 scopus 로고
    • Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions
    • Parkinson JS, Houts SE (1982) Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions. J Bacteriol 151: 106-113.
    • (1982) J Bacteriol , vol.151 , pp. 106-113
    • Parkinson, J.S.1    Houts, S.E.2
  • 39
    • 4544327632 scopus 로고    scopus 로고
    • Effect of chemoreceptor modification on assembly and activity of the receptor-kinase complex in Escherichia coli
    • DOI 10.1128/JB.186.19.6643-6646.2004
    • Liberman L, Berg HC, Sourjik V (2004) Effect of chemoreceptor modification on assembly and activity of the receptor-kinase complex in Escherichia coli. J Bacteriol 186: 6643-6646. (Pubitemid 39258147)
    • (2004) Journal of Bacteriology , vol.186 , Issue.19 , pp. 6643-6646
    • Liberman, L.1    Berg, H.C.2    Sourjik, V.3
  • 40
    • 0033865904 scopus 로고    scopus 로고
    • Localization of components of the chemotaxis machinery of Escherichia coli using fluorescent protein fusions
    • DOI 10.1046/j.1365-2958.2000.02044.x
    • Sourjik V, Berg HC (2000) Localization of components of the chemotaxis machinery of Esherichia coli using fluorescent protein fusions. Mol Microbiol 37: 740-751. (Pubitemid 30618137)
    • (2000) Molecular Microbiology , vol.37 , Issue.4 , pp. 740-751
    • Sourjik, V.1    Berg, H.C.2
  • 41
    • 0037039384 scopus 로고    scopus 로고
    • Receptor sensitivity in bacterial chemotaxis
    • Sourjik V, Berg HC (2002) Receptor sensitivity in bacterial chemotaxis. Proc Natl Acad Sci U S A 99: 123-127.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 123-127
    • Sourjik, V.1    Berg, H.C.2
  • 42
    • 43449139401 scopus 로고    scopus 로고
    • Stochastic assembly of chemoreceptor clusters in Escherichia coli
    • DOI 10.1111/j.1365-2958.2008.06227.x
    • Thiem S, Sourjik V (2008) Stochastic assembly of chemoreceptor clusters in Escherichia coli. Mol Microbiol 68: 1228-1236. (Pubitemid 351670198)
    • (2008) Molecular Microbiology , vol.68 , Issue.5 , pp. 1228-1236
    • Thiem, S.1    Sourjik, V.2
  • 43
    • 3242890106 scopus 로고    scopus 로고
    • CVTree: A phylogenetic tree reconstruction tool based on whole genomes
    • DOI 10.1093/nar/gkh362
    • Qi J, Luo H, Hao B (2004) CVTree: a phylogenetic tree reconstruction tool based on whole genomes. Nucleic Acids Res 32: W45-47. (Pubitemid 38997297)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS
    • Qi, J.1    Luo, H.2    Hao, B.3
  • 44
    • 0034009901 scopus 로고    scopus 로고
    • An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells
    • DOI 10.1126/science.287.5458.1652
    • Cluzel P, Surette M, Leibler S (2000) An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science 287: 1652-1655. (Pubitemid 30127766)
    • (2000) Science , vol.287 , Issue.5458 , pp. 1652-1655
    • Cluzel, P.1    Surette, M.2    Leibler, S.3
  • 45
    • 0023777735 scopus 로고
    • Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
    • DOI 10.1016/0378-1119(88)90440-4
    • Amann E, Ochs B, Abel KJ (1988) Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene 69: 301-315. (Pubitemid 18243870)
    • (1988) Gene , vol.69 , Issue.2 , pp. 301-315
    • Amann, E.1    Ochs, B.2    Abel, K.-J.3
  • 46
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter
    • Guzman LM, Belin D, Carson MJ, Beckwith J (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose pBAD promoter. J Bacteriol 177: 4121-4130.
    • (1995) J Bacteriol , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 47
    • 33748486238 scopus 로고    scopus 로고
    • Determinants of chemoreceptor cluster formation in Escherichia coli
    • DOI 10.1111/j.1365-2958.2006.05250.x
    • Kentner D, Thiem S, Hildenbeutel M, Sourjik V (2006) Determinants of chemoreceptor cluster formation in Escherichia coli. Mol Microbiol 61: 407-417. (Pubitemid 44356572)
    • (2006) Molecular Microbiology , vol.61 , Issue.2 , pp. 407-417
    • Kentner, D.1    Thiem, S.2    Hildenbeutel, M.3    Sourjik, V.4


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