-
3
-
-
0029082529
-
Structure of the P1 helix from group I self-splicing introns
-
Allain FH, Varani G (1995) Structure of the P1 helix from group I self-splicing introns. J Mol Biol 250:333-353
-
(1995)
J Mol Biol
, vol.250
, pp. 333-353
-
-
Allain, F.H.1
Varani, G.2
-
4
-
-
26244435237
-
Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR
-
Blad H, Reiter NJ, Abildgaard F, Markley JL, Butcher SE (2005) Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR. J Mol Biol 353:540-555
-
(2005)
J Mol Biol
, vol.353
, pp. 540-555
-
-
Blad, H.1
Reiter, N.J.2
Abildgaard, F.3
Markley, J.L.4
Butcher, S.E.5
-
5
-
-
0032842695
-
13C spin relaxation measurements in RNA: Sensitivity and resolution improvement using spin-state selective correlation experiments
-
Boisbouvier J, Brutscher B, Simorre J, Marion D (1999) 13C spin relaxation measurements in RNA: Sensitivity and resolution improvement using spin-state selective correlation experiments. J Biomol NMR 14:241-252
-
(1999)
J Biomol NMR
, vol.14
, pp. 241-252
-
-
Boisbouvier, J.1
Brutscher, B.2
Simorre, J.3
Marion, D.4
-
6
-
-
0028175795
-
13C-NMR relaxation in three DNA oligonucleotide duplexes: Model-free analysis of internal and overall motion
-
Borer PN, LaPlante SR, Kumar A, Zanatta N, Martin A, Hakkinen A, Levy GC (1994) 13C-NMR relaxation in three DNA oligonucleotide duplexes: model-free analysis of internal and overall motion. Biochemistry 33:2441-2450
-
(1994)
Biochemistry
, vol.33
, pp. 2441-2450
-
-
Borer, P.N.1
LaPlante, S.R.2
Kumar, A.3
Zanatta, N.4
Martin, A.5
Hakkinen, A.6
Levy, G.C.7
-
7
-
-
1242331368
-
Phosphorus-31 transverse relaxation rate measurements by NMR spectroscopy: Insight into conformational exchange along the nucleic acid backbone
-
Catoire LJ (2004) Phosphorus-31 transverse relaxation rate measurements by NMR spectroscopy: Insight into conformational exchange along the nucleic acid backbone. J Biomol NMR 28:179-184
-
(2004)
J Biomol NMR
, vol.28
, pp. 179-184
-
-
Catoire, L.J.1
-
8
-
-
33745744196
-
Molecular basis for temperature sensing by an RNA thermometer
-
Chowdhury S, Maris C, Allain FH, Narberhaus F (2006) Molecular basis for temperature sensing by an RNA thermometer. EMBO J 25:2487-2497
-
(2006)
EMBO J
, vol.25
, pp. 2487-2497
-
-
Chowdhury, S.1
Maris, C.2
Allain, F.H.3
Narberhaus, F.4
-
9
-
-
0025046144
-
Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins
-
Clore GM, Szabo A, Bax A, Kay LE, Driscoll PC, Gronenborn AM (1990) Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins. J Am Chem Soc 112:4989-4991
-
(1990)
J Am Chem Soc
, vol.112
, pp. 4989-4991
-
-
Clore, G.M.1
Szabo, A.2
Bax, A.3
Kay, L.E.4
Driscoll, P.C.5
Gronenborn, A.M.6
-
10
-
-
0037266991
-
The use of model selection in the model-free analysis of protein dynamics
-
d'Auvergne EJ, Gooley PR (2003) The use of model selection in the model-free analysis of protein dynamics. J Biomol NMR 25:25-39
-
(2003)
J Biomol NMR
, vol.25
, pp. 25-39
-
-
d'Auvergne, E.J.1
Gooley, P.R.2
-
11
-
-
27244434786
-
Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR 13C relaxation
-
Duchardt E, Schwalbe H (2005) Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR 13C relaxation. J Biomol NMR 32:295-308
-
(2005)
J Biomol NMR
, vol.32
, pp. 295-308
-
-
Duchardt, E.1
Schwalbe, H.2
-
12
-
-
47249117197
-
Cytosine ribose flexibility in DNA: A combined NMR 13C spin relaxation and molecular dynamics simulation study
-
Duchardt E, Nilsson L, Schleucher J (2008) Cytosine ribose flexibility in DNA: A combined NMR 13C spin relaxation and molecular dynamics simulation study. Nucleic Acids Res 36:4211-4219
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4211-4219
-
-
Duchardt, E.1
Nilsson, L.2
Schleucher, J.3
-
13
-
-
0034680628
-
The crystal structure of UUCG tetraloop
-
Ennifar E, Nikulin A, Tishchenko S, Serganov A, Nevskaya N, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P (2000) The crystal structure of UUCG tetraloop. J Mol Biol 304:35-42
-
(2000)
J Mol Biol
, vol.304
, pp. 35-42
-
-
Ennifar, E.1
Nikulin, A.2
Tishchenko, S.3
Serganov, A.4
Nevskaya, N.5
Garber, M.6
Ehresmann, B.7
Ehresmann, C.8
Nikonov, S.9
Dumas, P.10
-
14
-
-
41849090144
-
NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops
-
Ferner J, Villa A, Duchardt E, Widjajakusuma E, Wohnert J, Stock G, Schwalbe H (2008) NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops. Nucleic Acids Res 36:1928-1940
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1928-1940
-
-
Ferner, J.1
Villa, A.2
Duchardt, E.3
Widjajakusuma, E.4
Wohnert, J.5
Stock, G.6
Schwalbe, H.7
-
15
-
-
69249234617
-
Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries
-
Ferner J, Suhartono M, Breitung S, Jonker HR, Hennig M, Wohnert J, Gobel M, Schwalbe H (2009) Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries. Chembiochem 10(9):1490-1494
-
(2009)
Chembiochem
, vol.10
, Issue.9
, pp. 1490-1494
-
-
Ferner, J.1
Suhartono, M.2
Breitung, S.3
Jonker, H.R.4
Hennig, M.5
Wohnert, J.6
Gobel, M.7
Schwalbe, H.8
-
16
-
-
0033629304
-
An improved broadband decoupling sequence for liquid crystals and solids
-
Fung BM, Khitrin AK, Ermolaev K (2000) An improved broadband decoupling sequence for liquid crystals and solids. J Magn Reson 142:97-101
-
(2000)
J Magn Reson
, vol.142
, pp. 97-101
-
-
Fung, B.M.1
Khitrin, A.K.2
Ermolaev, K.3
-
17
-
-
34547812691
-
Time-resolved NMR studies of RNA folding
-
Fürtig B, Buck J, Manoharan V, Bermel W, Jaschke A, Wenter P, Pitsch S, Schwalbe H (2007a) Time-resolved NMR studies of RNA folding. Biopolymers 86:360-383
-
(2007)
Biopolymers
, vol.86
, pp. 360-383
-
-
Fürtig, B.1
Buck, J.2
Manoharan, V.3
Bermel, W.4
Jaschke, A.5
Wenter, P.6
Pitsch, S.7
Schwalbe, H.8
-
18
-
-
37549009573
-
Conformational dynamics of bistable RNAs studied by time-resolved NMR spectroscopy
-
Fürtig B, Wenter P, Reymond L, Richter C, Pitsch S, Schwalbe H (2007b) Conformational dynamics of bistable RNAs studied by time-resolved NMR spectroscopy. J Am Chem Soc 129:16222-16229
-
(2007)
J Am Chem Soc
, vol.129
, pp. 16222-16229
-
-
Fürtig, B.1
Wenter, P.2
Reymond, L.3
Richter, C.4
Pitsch, S.5
Schwalbe, H.6
-
19
-
-
10744232623
-
New NMR experiments for RNA nucleobase resonance assignment and chemical shift analysis of an RNA UUCG tetraloop
-
Fürtig B, Richter C, Bermel W, Schwalbe H (2004) New NMR experiments for RNA nucleobase resonance assignment and chemical shift analysis of an RNA UUCG tetraloop. J Biomol NMR 28:69-79
-
(2004)
J Biomol NMR
, vol.28
, pp. 69-79
-
-
Fürtig, B.1
Richter, C.2
Bermel, W.3
Schwalbe, H.4
-
21
-
-
0034328380
-
HYDRONMR: Prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations
-
Garcia de la Torre J, Huertas ML, Carrasco B (2000) HYDRONMR: Prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations. J Magn Reson 147:138-146
-
(2000)
J Magn Reson
, vol.147
, pp. 138-146
-
-
Garcia de la Torre, J.1
Huertas, M.L.2
Carrasco, B.3
-
22
-
-
0029196249
-
Selectively C-13-enriched DNA-dynamics of the C1′-H1′ vector in D(CGCAAATTTGCG)(2)
-
Gaudin F, Paquet F, Chanteloup L, Beau JM, Thuong NT, Lancelot G (1995) Selectively C-13-enriched DNA-dynamics of the C1′-H1′ vector in D(CGCAAATTTGCG)(2). J Biomol NMR 5:49-58
-
(1995)
J Biomol NMR
, vol.5
, pp. 49-58
-
-
Gaudin, F.1
Paquet, F.2
Chanteloup, L.3
Beau, J.M.4
Thuong, N.T.5
Lancelot, G.6
-
23
-
-
33745362452
-
15N relaxation measurements at several fields. Implications for backbone order parameters
-
15N relaxation measurements at several fields. Implications for backbone order parameters. J Am Chem Soc 128:7855-7870
-
(2006)
J Am Chem Soc
, vol.128
, pp. 7855-7870
-
-
Hall, J.B.1
Fushman, D.2
-
24
-
-
33645874517
-
Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: Towards new long-range orientational constraints
-
Hansen AL, Al-Hashimi HM (2006) Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: Towards new long-range orientational constraints. J Magn Reson 179:299-307
-
(2006)
J Magn Reson
, vol.179
, pp. 299-307
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
25
-
-
67849097846
-
Extending the range of microsecond-to-millisecond chemical exchange detected in labeled and unlabeled nucleic acids by selective carbon R(1rho) NMR spectroscopy
-
Hansen AL, Nikolova EN, Casiano-Negroni A, Al-Hashimi HM (2009) Extending the range of microsecond-to-millisecond chemical exchange detected in labeled and unlabeled nucleic acids by selective carbon R(1rho) NMR spectroscopy. J Am Chem Soc 131:3818-3819
-
(2009)
J Am Chem Soc
, vol.131
, pp. 3818-3819
-
-
Hansen, A.L.1
Nikolova, E.N.2
Casiano-Negroni, A.3
Al-Hashimi, H.M.4
-
26
-
-
34547809997
-
Beyond static structures of RNA by NMR: Folding, refolding, and dynamics at atomic resolution
-
Hashim MA-H (2007) Beyond static structures of RNA by NMR: Folding, refolding, and dynamics at atomic resolution. Biopolymers 86:345-347
-
(2007)
Biopolymers
, vol.86
, pp. 345-347
-
-
Hashim, M.A.-H.1
-
27
-
-
0018987432
-
31P in macromolecules
-
31P in macromolecules. Biopolymers 19:509-522
-
(1980)
Biopolymers
, vol.19
, pp. 509-522
-
-
Heisaburo, S.1
-
28
-
-
38249037512
-
Magic-angle-spinning NMR on solid biological systems. Analysis of the origin of the spectral linewidths
-
Hemminga MA, de Jager PA, Krüse J, Lamerichs RMJN (1987) Magic-angle-spinning NMR on solid biological systems. Analysis of the origin of the spectral linewidths. J Magn Reson 1969(71):446-460
-
(1987)
J Magn Reson
, vol.1969
, Issue.71
, pp. 446-460
-
-
Hemminga, M.A.1
de Jager, P.A.2
Krüse, J.3
Lamerichs, R.M.J.N.4
-
29
-
-
0017841271
-
31P chemical-shift tensors in barium diethyl phosphate and urea-phosphoric acid: Model compounds for phospholipid head-group studies
-
Herzfeld J, Griffin RG, Haberkorn RA (1978) 31P chemical-shift tensors in barium diethyl phosphate and urea-phosphoric acid: Model compounds for phospholipid head-group studies. Biochemistry 17:2711-2718
-
(1978)
Biochemistry
, vol.17
, pp. 2711-2718
-
-
Herzfeld, J.1
Griffin, R.G.2
Haberkorn, R.A.3
-
30
-
-
0027995135
-
Sequential backbone assignment in 13C-Labeled RNA via through-bond coherence transfer using three-dimensional triple resonance spectroscopy (1H, 13C, 31P) and two-dimensional hetero TOCSY
-
Heus HA, Wijmenga SS, van de Ven FJM, Hilbers CW (1994) Sequential backbone assignment in 13C-Labeled RNA via through-bond coherence transfer using three-dimensional triple resonance spectroscopy (1H, 13C, 31P) and two-dimensional hetero TOCSY. J Am Chem Soc 116:4983-4984
-
(1994)
J Am Chem Soc
, vol.116
, pp. 4983-4984
-
-
Heus, H.A.1
Wijmenga, S.S.2
van de Ven, F.J.M.3
Hilbers, C.W.4
-
31
-
-
0037225166
-
Bistable secondary structures of small RNAs and their structural probing by comparative imino proton NMR spectroscopy
-
Hobartner C, Micura R (2003) Bistable secondary structures of small RNAs and their structural probing by comparative imino proton NMR spectroscopy. J Mol Biol 325:421-431
-
(2003)
J Mol Biol
, vol.325
, pp. 421-431
-
-
Hobartner, C.1
Micura, R.2
-
33
-
-
0034664076
-
Active site dynamics in the lead-dependent ribozyme
-
Hoogstraten CG, Wank JR, Pardi A (2000) Active site dynamics in the lead-dependent ribozyme. Biochemistry 39:9951-9958
-
(2000)
Biochemistry
, vol.39
, pp. 9951-9958
-
-
Hoogstraten, C.G.1
Wank, J.R.2
Pardi, A.3
-
34
-
-
57549095175
-
Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using (13)C NMR spin relaxation and specific isotope labeling
-
Johnson JE, Hoogstraten CG (2008) Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using (13)C NMR spin relaxation and specific isotope labeling. J Am Chem Soc 130:16757-16769
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16757-16769
-
-
Johnson, J.E.1
Hoogstraten, C.G.2
-
35
-
-
33747880448
-
Alternate-site isotopic labeling of ribonucleotides for NMR studies of ribose conformational dynamics in RNA
-
Johnson JE Jr, Julien KR, Hoogstraten CG (2006) Alternate-site isotopic labeling of ribonucleotides for NMR studies of ribose conformational dynamics in RNA. J Biomol NMR 35:261-274
-
(2006)
J Biomol NMR
, vol.35
, pp. 261-274
-
-
Johnson Jr., J.E.1
Julien, K.R.2
Hoogstraten, C.G.3
-
36
-
-
0023642547
-
The dynamical structure of the RNA in alfalfa mosaic virus studied by 31P-nuclear magnetic resonance
-
Kan JH, Cremers AF, Haasnoot CA, Hilbers CW (1987) The dynamical structure of the RNA in alfalfa mosaic virus studied by 31P-nuclear magnetic resonance. Eur J Biochem 168:635-639
-
(1987)
Eur J Biochem
, vol.168
, pp. 635-639
-
-
Kan, J.H.1
Cremers, A.F.2
Haasnoot, C.A.3
Hilbers, C.W.4
-
37
-
-
44049117796
-
Proton-detected hetero-TOCSY experiments with application to nucleic acids
-
Kellogg GW (1992) Proton-detected hetero-TOCSY experiments with application to nucleic acids. J Magn Reson 1969(98):176-182
-
(1992)
J Magn Reson
, vol.1969
, Issue.98
, pp. 176-182
-
-
Kellogg, G.W.1
-
38
-
-
0032253138
-
DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides
-
Kojima C, Ono A, Kainosho M, James TL (1998) DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides. J Magn Reson 135:310-333
-
(1998)
J Magn Reson
, vol.135
, pp. 310-333
-
-
Kojima, C.1
Ono, A.2
Kainosho, M.3
James, T.L.4
-
39
-
-
24344435151
-
Structure and dynamics of an RNA tetraloop: A joint molecular dynamics and NMR study
-
Koplin J, Mu Y, Richter C, Schwalbe H, Stock G (2005) Structure and dynamics of an RNA tetraloop: A joint molecular dynamics and NMR study. Structure 13:1255-1267
-
(2005)
Structure
, vol.13
, pp. 1255-1267
-
-
Koplin, J.1
Mu, Y.2
Richter, C.3
Schwalbe, H.4
Stock, G.5
-
40
-
-
0033520723
-
15N chemical shift anisotropy in Escherichia coli ribonuclease H in solution
-
15N chemical shift anisotropy in Escherichia coli ribonuclease H in solution. J Am Chem Soc 121:10119-10125
-
(1999)
J Am Chem Soc
, vol.121
, pp. 10119-10125
-
-
Kroenke, C.D.1
Rance, M.2
Palmer, A.G.3
-
41
-
-
0025762608
-
Interaction of berenil with the EcoRI dodecamer d(CGCGAATTCGCG)2 in solution studied by NMR
-
Lane AN, Jenkins TC, Brown T, Neidle S (1991) Interaction of berenil with the EcoRI dodecamer d(CGCGAATTCGCG)2 in solution studied by NMR. Biochemistry 30:1372-1385
-
(1991)
Biochemistry
, vol.30
, pp. 1372-1385
-
-
Lane, A.N.1
Jenkins, T.C.2
Brown, T.3
Neidle, S.4
-
42
-
-
34548761368
-
Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach
-
Lang K, Rieder R, Micura R (2007) Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach. Nucleic Acids Res 35:5370-5378
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5370-5378
-
-
Lang, K.1
Rieder, R.2
Micura, R.3
-
43
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
-
Lipari G, Szabo A (1982a) Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity. J Am Chem Soc 104:4546-4559
-
(1982)
J Am Chem Soc
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
44
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
-
Lipari G, Szabo A (1982b) Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results. J Am Chem Soc 104:4559-4570
-
(1982)
J Am Chem Soc
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
45
-
-
17744366182
-
Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy
-
Loth K, Pelupessy P, Bodenhausen G (2005) Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy. J Am Chem Soc 127:6062-6068
-
(2005)
J Am Chem Soc
, vol.127
, pp. 6062-6068
-
-
Loth, K.1
Pelupessy, P.2
Bodenhausen, G.3
-
46
-
-
0035830962
-
Structure of a eukaryotic decoding region A-site RNA
-
Lynch SR, Puglisi JD (2001) Structure of a eukaryotic decoding region A-site RNA. J Mol Biol 306:1023-1035
-
(2001)
J Mol Biol
, vol.306
, pp. 1023-1035
-
-
Lynch, S.R.1
Puglisi, J.D.2
-
47
-
-
0027289394
-
A theoretical study of rotational diffusion models for rod-shaped viruses. The influence of motion on 31P nuclear magnetic resonance lineshapes and transversal relaxation
-
Magusin PC, Hemminga MA (1993) A theoretical study of rotational diffusion models for rod-shaped viruses. The influence of motion on 31P nuclear magnetic resonance lineshapes and transversal relaxation. Biophys J 64:1851-1860
-
(1993)
Biophys J
, vol.64
, pp. 1851-1860
-
-
Magusin, P.C.1
Hemminga, M.A.2
-
48
-
-
0028178472
-
Analysis of 31P MAS NMR spectra and transversal relaxation of bacteriophage M13 and tobacco mosaic virus
-
Magusin PC, Hemminga MA (1994) Analysis of 31P MAS NMR spectra and transversal relaxation of bacteriophage M13 and tobacco mosaic virus. Biophys J 66:1197-1208
-
(1994)
Biophys J
, vol.66
, pp. 1197-1208
-
-
Magusin, P.C.1
Hemminga, M.A.2
-
49
-
-
0028941877
-
Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
-
Mandel AM, Akke M, Palmer IIIAG (1995) Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme. J Mol Biol 246:144-163
-
(1995)
J Mol Biol
, vol.246
, pp. 144-163
-
-
Mandel, A.M.1
Akke, M.2
Palmer III, A.G.3
-
50
-
-
0028008137
-
Three-dimensional triple-resonance 1H, 13C, 31P experiment: Sequential through-bond correlation of ribose protons and intervening phosphorus along the RNA oligonucleotide backbone
-
Marino JP, Schwalbe H, Anklin C, Bermel W, Crothers DM, Griesinger C (1994) Three-dimensional triple-resonance 1H, 13C, 31P experiment: sequential through-bond correlation of ribose protons and intervening phosphorus along the RNA oligonucleotide backbone. J Am Chem Soc 116:6472-6473
-
(1994)
J Am Chem Soc
, vol.116
, pp. 6472-6473
-
-
Marino, J.P.1
Schwalbe, H.2
Anklin, C.3
Bermel, W.4
Crothers, D.M.5
Griesinger, C.6
-
51
-
-
0029202877
-
Sequential correlation of anomeric ribose protons and intervening phosphorus in RNA oligonucleotides by a 1H, 13C, 31P triple resonance experiment: HCP-CCH-TOCSY
-
Marino JP, Schwalbe H, Anklin C, Bermel W, Crothers DM, Griesinger C (1995) Sequential correlation of anomeric ribose protons and intervening phosphorus in RNA oligonucleotides by a 1H, 13C, 31P triple resonance experiment: HCP-CCH-TOCSY. J Biomol NMR 5:87-92
-
(1995)
J Biomol NMR
, vol.5
, pp. 87-92
-
-
Marino, J.P.1
Schwalbe, H.2
Anklin, C.3
Bermel, W.4
Crothers, D.M.5
Griesinger, C.6
-
52
-
-
0031577316
-
Theoretical studies of an exceptionally stable RNA tetraloop: Observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics
-
Miller JL, Kollman PA (1997) Theoretical studies of an exceptionally stable RNA tetraloop: Observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics. J Mol Biol 270:436-450
-
(1997)
J Mol Biol
, vol.270
, pp. 436-450
-
-
Miller, J.L.1
Kollman, P.A.2
-
54
-
-
0037061982
-
Molecular dynamics of the tRNAAla acceptor stem: Comparison between continuum reaction field and particle-mesh Ewald electrostatic treatments
-
Nina M, Simonson T (2002) Molecular dynamics of the tRNAAla acceptor stem: comparison between continuum reaction field and particle-mesh Ewald electrostatic treatments. J Phys Chem B 106:3696-3705
-
(2002)
J Phys Chem B
, vol.106
, pp. 3696-3705
-
-
Nina, M.1
Simonson, T.2
-
55
-
-
51749105637
-
Changes in dynamics of SRE-RNA on binding to the VTS1p-SAM domain studied by 13C NMR relaxation
-
Oberstrass FC, Allain FH, Ravindranathan S (2008) Changes in dynamics of SRE-RNA on binding to the VTS1p-SAM domain studied by 13C NMR relaxation. J Am Chem Soc 130:12007-12020
-
(2008)
J Am Chem Soc
, vol.130
, pp. 12007-12020
-
-
Oberstrass, F.C.1
Allain, F.H.2
Ravindranathan, S.3
-
56
-
-
0028011807
-
Dynamic properties of nucleic acids in biosupramolecular systems, as studied by 31P NMR
-
Odahara T, Nishimoto S, Katsutani N, Kyogoku Y, Morimoto Y, Matsushiro A, Akutsu H (1994) Dynamic properties of nucleic acids in biosupramolecular systems, as studied by 31P NMR. J Biochem 115:270-278
-
(1994)
J Biochem
, vol.115
, pp. 270-278
-
-
Odahara, T.1
Nishimoto, S.2
Katsutani, N.3
Kyogoku, Y.4
Morimoto, Y.5
Matsushiro, A.6
Akutsu, H.7
-
57
-
-
0020489968
-
Carbon-13 NMR relaxation studies of pre-melt structural dynamics in [4-13C-uracil] labeled E. coli transfer RNAIVal
-
Olsen JI, Schweizer MP, Walkiw IJ, Hamill WD Jr, Horton WJ, Grant DM (1982) Carbon-13 NMR relaxation studies of pre-melt structural dynamics in [4-13C-uracil] labeled E. coli transfer RNAIVal. Nucleic Acids Res 10:4449-4464
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 4449-4464
-
-
Olsen, J.I.1
Schweizer, M.P.2
Walkiw, I.J.3
Hamill Jr., W.D.4
Horton, W.J.5
Grant, D.M.6
-
58
-
-
45949086050
-
31P chemical shift tensors for canonical and non-canonical conformations of nucleic acids: A DFT study and NMR implications
-
Precechtelova J, Padrta P, Munzarova ML, Sklenar V (2008) 31P chemical shift tensors for canonical and non-canonical conformations of nucleic acids: A DFT study and NMR implications. J Phys Chem B 112:3470-3478
-
(2008)
J Phys Chem B
, vol.112
, pp. 3470-3478
-
-
Precechtelova, J.1
Padrta, P.2
Munzarova, M.L.3
Sklenar, V.4
-
59
-
-
0842329145
-
A solid-state NMR study of the fast and slow dynamics of collagen fibrils at varying hydration levels
-
Reichert D, Pascui O, deAzevedo ER, Bonagamba TJ, Arnold K, Huster D (2004) A solid-state NMR study of the fast and slow dynamics of collagen fibrils at varying hydration levels. Magn Reson Chem 42:276-284
-
(2004)
Magn Reson Chem
, vol.42
, pp. 276-284
-
-
Reichert, D.1
Pascui, O.2
deAzevedo, E.R.3
Bonagamba, T.J.4
Arnold, K.5
Huster, D.6
-
60
-
-
34447548824
-
Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control
-
Rieder R, Lang K, Graber D, Micura R (2007) Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control. Chembiochem 8:896-902
-
(2007)
Chembiochem
, vol.8
, pp. 896-902
-
-
Rieder, R.1
Lang, K.2
Graber, D.3
Micura, R.4
-
61
-
-
0021103713
-
Internal dynamics of transfer ribonucleic acid determined by nuclear magnetic resonance of carbon-13-enriched ribose carbon 1
-
Schmidt PG, Playl T, Agris PF (1983) Internal dynamics of transfer ribonucleic acid determined by nuclear magnetic resonance of carbon-13-enriched ribose carbon 1. Biochemistry 22:1408-1415
-
(1983)
Biochemistry
, vol.22
, pp. 1408-1415
-
-
Schmidt, P.G.1
Playl, T.2
Agris, P.F.3
-
62
-
-
0023667720
-
Internal motions in yeast phenylalanine transfer RNA from 13C NMR relaxation rates of modified base methyl groups: A model-free approach
-
Schmidt PG, Sierzputowska-Gracz H, Agris PF (1987) Internal motions in yeast phenylalanine transfer RNA from 13C NMR relaxation rates of modified base methyl groups: A model-free approach. Biochemistry 26:8529-8534
-
(1987)
Biochemistry
, vol.26
, pp. 8529-8534
-
-
Schmidt, P.G.1
Sierzputowska-Gracz, H.2
Agris, P.F.3
-
63
-
-
34247242053
-
Structures of RNA switches: Insight into molecular recognition and tertiary structure
-
Schwalbe H, Buck J, Furtig B, Noeske J, Wohnert J (2007) Structures of RNA switches: Insight into molecular recognition and tertiary structure. Angew Chem Int Ed Engl 46:1212-1219
-
(2007)
Angew Chem Int Ed Engl
, vol.46
, pp. 1212-1219
-
-
Schwalbe, H.1
Buck, J.2
Furtig, B.3
Noeske, J.4
Wohnert, J.5
-
64
-
-
19444373245
-
13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein
-
Shajani Z, Varani G (2005) 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein. J Mol Biol 349:699-715
-
(2005)
J Mol Biol
, vol.349
, pp. 699-715
-
-
Shajani, Z.1
Varani, G.2
-
65
-
-
34547726270
-
NMR studies of dynamics in RNA and DNA by 13C relaxation
-
Shajani Z, Varani G (2007) NMR studies of dynamics in RNA and DNA by 13C relaxation. Biopolymers 86:348-359
-
(2007)
Biopolymers
, vol.86
, pp. 348-359
-
-
Shajani, Z.1
Varani, G.2
-
66
-
-
34249078827
-
Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies
-
Shajani Z, Drobny G, Varani G (2007) Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies. Biochemistry 46:5875-5883
-
(2007)
Biochemistry
, vol.46
, pp. 5875-5883
-
-
Shajani, Z.1
Drobny, G.2
Varani, G.3
-
67
-
-
24344472587
-
Iron responsive element RNA flexibility described by NMR and isotropic reorientational eigenmode dynamics
-
Showalter SA, Baker NA, Tang C, Hall KB (2005) Iron responsive element RNA flexibility described by NMR and isotropic reorientational eigenmode dynamics. J Biomol NMR 32:179-193
-
(2005)
J Biomol NMR
, vol.32
, pp. 179-193
-
-
Showalter, S.A.1
Baker, N.A.2
Tang, C.3
Hall, K.B.4
-
68
-
-
0032554612
-
Dynamics in psoralen-damaged DNA by 1H-detected natural abundance 13C NMR spectroscopy
-
Spielmann HP (1998) Dynamics in psoralen-damaged DNA by 1H-detected natural abundance 13C NMR spectroscopy. Biochemistry 37:5426-5438
-
(1998)
Biochemistry
, vol.37
, pp. 5426-5438
-
-
Spielmann, H.P.1
-
69
-
-
0017787255
-
Phosphorus-31 chemical shift anisotropy in solid nucleic acids
-
Terao T, Matsui S, Akasaka K (1977) Phosphorus-31 chemical shift anisotropy in solid nucleic acids. J Am Chem Soc 99:6136-6138
-
(1977)
J Am Chem Soc
, vol.99
, pp. 6136-6138
-
-
Terao, T.1
Matsui, S.2
Akasaka, K.3
-
70
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
Tucker BJ, Breaker RR (2005) Riboswitches as versatile gene control elements. Curr Opin Struct Biol 15:342-348
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
71
-
-
18644374104
-
A suite of 2H NMR spin relaxation experiments for the measurement of RNA dynamics
-
Vallurupalli P, Kay LE (2005) A suite of 2H NMR spin relaxation experiments for the measurement of RNA dynamics. J Am Chem Soc 127:6893-6901
-
(2005)
J Am Chem Soc
, vol.127
, pp. 6893-6901
-
-
Vallurupalli, P.1
Kay, L.E.2
-
72
-
-
0026348081
-
RNA structure and NMR spectroscopy
-
Varani G, Tinoco I Jr (1991) RNA structure and NMR spectroscopy. Q Rev Biophys 24:479-532
-
(1991)
Q Rev Biophys
, vol.24
, pp. 479-532
-
-
Varani, G.1
Tinoco Jr., I.2
-
73
-
-
33846284150
-
What NMR relaxation can tell us about the internal motion of an RNA Hairpin: A molecular dynamics simulation study
-
Villa A, Stock G (2006) What NMR relaxation can tell us about the internal motion of an RNA Hairpin: a molecular dynamics simulation study. J. Chem. Theory Comput. 2:1228-1236
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 1228-1236
-
-
Villa, A.1
Stock, G.2
-
74
-
-
38649086360
-
Molecular dynamics simulation of the structure, dynamics, and thermostability of the RNA hairpins uCACGg and cUUCGg
-
Villa A, Widjajakusuma E, Stock G (2008) Molecular dynamics simulation of the structure, dynamics, and thermostability of the RNA hairpins uCACGg and cUUCGg. J Phys Chem B 112:134-142
-
(2008)
J Phys Chem B
, vol.112
, pp. 134-142
-
-
Villa, A.1
Widjajakusuma, E.2
Stock, G.3
-
75
-
-
61949483551
-
Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings
-
Vokacova Z, Budesinsky M, Rosenberg I, Schneider B, Sponer J, Sychrovsky V (2009) Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings. J Phys Chem B 113:1182-1191
-
(2009)
J Phys Chem B
, vol.113
, pp. 1182-1191
-
-
Vokacova, Z.1
Budesinsky, M.2
Rosenberg, I.3
Schneider, B.4
Sponer, J.5
Sychrovsky, V.6
-
77
-
-
18044387417
-
Kinetics of photoinduced RNA refolding by real-time NMR spectroscopy
-
Wenter P, Fürtig B, Hainard A, Schwalbe H, Pitsch S (2005) Kinetics of photoinduced RNA refolding by real-time NMR spectroscopy. Angew Chem Int Ed Engl 44:2600-2603
-
(2005)
Angew Chem Int Ed Engl
, vol.44
, pp. 2600-2603
-
-
Wenter, P.1
Fürtig, B.2
Hainard, A.3
Schwalbe, H.4
Pitsch, S.5
-
78
-
-
33745015517
-
Kinetics of RNA refolding in dynamic equilibrium by 1 H-detected 15 N exchange NMR spectroscopy
-
Wenter P, Bodenhausen G, Dittmer J, Pitsch S (2006a) Kinetics of RNA refolding in dynamic equilibrium by 1 H-detected 15 N exchange NMR spectroscopy. J Am Chem Soc 128:7579-7587
-
(2006)
J Am Chem Soc
, vol.128
, pp. 7579-7587
-
-
Wenter, P.1
Bodenhausen, G.2
Dittmer, J.3
Pitsch, S.4
-
79
-
-
33644878851
-
A caged uridine for the selective preparation of an RNA fold and determination of its refolding kinetics by real-time NMR
-
Wenter P, Fürtig B, Hainard A, Schwalbe H, Pitsch S (2006b) A caged uridine for the selective preparation of an RNA fold and determination of its refolding kinetics by real-time NMR. Chembiochem 7:417-420
-
(2006)
Chembiochem
, vol.7
, pp. 417-420
-
-
Wenter, P.1
Fürtig, B.2
Hainard, A.3
Schwalbe, H.4
Pitsch, S.5
-
80
-
-
0033064123
-
Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model
-
Williams DJ, Hall KB (1999) Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model. Biophys J 76:3192-3205
-
(1999)
Biophys J
, vol.76
, pp. 3192-3205
-
-
Williams, D.J.1
Hall, K.B.2
-
81
-
-
0034677665
-
Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop
-
Williams DJ, Hall KB (2000) Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop. J Mol Biol 297:251-265
-
(2000)
J Mol Biol
, vol.297
, pp. 251-265
-
-
Williams, D.J.1
Hall, K.B.2
-
82
-
-
0034744390
-
Thermodynamics of 2′-ribose substitutions in UUCG tetraloops
-
Williams DJ, Boots JL, Hall KB (2001) Thermodynamics of 2′-ribose substitutions in UUCG tetraloops. RNA 7:44-53
-
(2001)
RNA
, vol.7
, pp. 44-53
-
-
Williams, D.J.1
Boots, J.L.2
Hall, K.B.3
-
83
-
-
0024539551
-
Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG)
-
Williamson JR, Boxer SG (1989a) Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG). Biochemistry 28:2819-2831
-
(1989)
Biochemistry
, vol.28
, pp. 2819-2831
-
-
Williamson, J.R.1
Boxer, S.G.2
-
84
-
-
0024523061
-
Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations
-
Williamson JR, Boxer SG (1989b) Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations. Biochemistry 28:2831-2836
-
(1989)
Biochemistry
, vol.28
, pp. 2831-2836
-
-
Williamson, J.R.1
Boxer, S.G.2
-
85
-
-
27744519876
-
Riboswitches and the role of noncoding RNAs in bacterial metabolic control
-
Winkler WC (2005) Riboswitches and the role of noncoding RNAs in bacterial metabolic control. Curr Opin Chem Biol 9:594-602
-
(2005)
Curr Opin Chem Biol
, vol.9
, pp. 594-602
-
-
Winkler, W.C.1
-
86
-
-
31944446215
-
Resolving the motional modes that code for RNA adaptation
-
Zhang Q, Sun X, Watt ED, Al-Hashimi HM (2006) Resolving the motional modes that code for RNA adaptation. Science 311:653-656
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
-
87
-
-
37549017736
-
Visualizing spatially correlated dynamics that directs RNA conformational transitions
-
Zhang Q, Stelzer AC, Fisher CK, Al-Hashimi HM (2007) Visualizing spatially correlated dynamics that directs RNA conformational transitions. Nature 450:1263-1267
-
(2007)
Nature
, vol.450
, pp. 1263-1267
-
-
Zhang, Q.1
Stelzer, A.C.2
Fisher, C.K.3
Al-Hashimi, H.M.4
|