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Journal of the American Chemical Society

Volumn 127, Issue 18, 2005, Pages 6893-6901

A suite of 2H NMR spin relaxation experiments for the measurement of RNA dynamics

(2) Vallurupalli, Pramodh a Kay, Lewis E a

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL RELAXATION; MOLECULAR DYNAMICS; NANOSTRUCTURED MATERIALS; NUCLEAR MAGNETIC RESONANCE;

RELAXATION RATES; RNA DYNAMICS; RNA MOLECULES; SPIN RELAXATION;

RNA;

CARBON 13; NUCLEOTIDE; RNA; CARBON; DEUTERIUM; GUANINE; URACIL;

ACCELERATION; ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; DEUTERON NUCLEAR MAGNETIC RESONANCE; MATHEMATICAL ANALYSIS; MOLECULAR DYNAMICS; TEMPERATURE; TIME; CHEMISTRY; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE; THERMODYNAMICS;

CARBON ISOTOPES; DEUTERIUM; GUANINE; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; RNA; TEMPERATURE; THERMODYNAMICS; URACIL;

EID: 18644374104 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja0427799 Document Type: Article

Times cited : (37)

References (57)

1
- 0036865280
- Blount, K. F.; Uhlenbeck, O. C. Biochem. Soc. Trans. 2002, 30, 1119-1122.
- (2002) Biochem. Soc. Trans. , vol.30 , pp. 1119-1122
- Blount, K.F.¹ Uhlenbeck, O.C.²

2
- 0032573424
- Hoogstraten, C. G.; Legault, P.; Pardi, A. J. Mol. Biol. 1998, 284, 337-350.
- (1998) J. Mol. Biol. , vol.284 , pp. 337-350
- Hoogstraten, C.G.¹ Legault, P.² Pardi, A.³

3
- 0033010809
- Wedekind, J. E.; McKay, D. B. Nat. Struct. Biol. 1999, 6, 261-268.
- (1999) Nat. Struct. Biol. , vol.6 , pp. 261-268
- Wedekind, J.E.¹ McKay, D.B.²

4
- 0038403669
- Ogle, J. M.; Carter, A. P.; Ramakrishnan, V. Trends Biochem. Sci 2003, 28, 259-266.
- (2003) Trends Biochem. Sci. , vol.28 , pp. 259-266
- Ogle, J.M.¹ Carter, A.P.² Ramakrishnan, V.³

5
- 0030970289
- Green, R.; Noller, H. F. Annu. Rev. Biochem. 1997, 66, 679-716.
- (1997) Annu. Rev. Biochem. , vol.66 , pp. 679-716
- Green, R.¹ Noller, H.F.²

6
- 0033784534
- Williamson, J. R. Nat. Struct. Biol. 2000, 7, 834-837.
- (2000) Nat. Struct. Biol. , vol.7 , pp. 834-837
- Williamson, J.R.¹

7
- 0030217514
- Palmer, A. G.; Williams, J.; McDermott, A. J. Phys. Chem. 1996, 100, 13293-13310.
- (1996) J. Phys. Chem. , vol.100 , pp. 13293-13310
- Palmer, A.G.¹ Williams, J.² McDermott, A.³

8
- 0034868445
- Stone, M. J. Acc. Chem. Res. 2001, 34, 379-388.
- (2001) Acc. Chem. Res. , vol.34 , pp. 379-388
- Stone, M.J.¹

9
- 0038037171
- Wang, T.; Cai, S.; Zuiderweg, E. R. J. Am. Chem. Soc. 2003, 125, 8639-8643.
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 8639-8643
- Wang, T.¹ Cai, S.² Zuiderweg, E.R.³

10
- 0030758245
- Akke, M.; Fiala, R.; Jiang, F.; Patel, D.; Palmer, A. G., III. RNA 1997, 3, 702-709.
- (1997) RNA , vol.3 , pp. 702-709
- Akke, M.¹ Fiala, R.² Jiang, F.³ Patel, D.⁴ Palmer III, A.G.⁵

11
- 0028175795
- Borer, P. N.; LaPlante, S. R.; Kumar, A.; Zanatta, N.; Martin, A.; Hakkinen, A.; Levy, G. C. Biochemistry 1994, 33, 2441-2450.
- (1994) Biochemistry , vol.33 , pp. 2441-2450
- Borer, P.N.¹ LaPlante, S.R.² Kumar, A.³ Zanatta, N.⁴ Martin, A.⁵ Hakkinen, A.⁶ Levy, G.C.⁷

12
- 0032842695
- Boisbouvier, J.; Bratscher, B.; Simorre, J. P.; Marion, D. J. Biomol. NMR 1999, 14, 241-252.
- (1999) J. Biomol. NMR , vol.14 , pp. 241-252
- Boisbouvier, J.¹ Bratscher, B.² Simorre, J.P.³ Marion, D.⁴

13
- 0042888606
- Boisbouvier, J.; Wu, Z.; Ono, A.; Kainosho, M.; Bax, A. J. Biomol. NMR 2003, 27, 133-142.
- (2003) J. Biomol. NMR , vol.27 , pp. 133-142
- Boisbouvier, J.¹ Wu, Z.² Ono, A.³ Kainosho, M.⁴ Bax, A.⁵

14
- 0029176895
- Muhandiram, D. R.; Yamazaki, T.; Sykes, B. D.; Kay, L. E. J. Am. Chem. Soc. 1995, 117, 11536-11544.
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 11536-11544
- Muhandiram, D.R.¹ Yamazaki, T.² Sykes, B.D.³ Kay, L.E.⁴

15
- 0037024180
- Millet, O.; Muhandiram, D. R.; Skrynnikov, N. R.; Kay, L. E. J. Am. Chem. Soc. 2002, 124, 6439-6448.
- (2002) J. Am. Chem. Soc. , vol.124 , pp. 6439-6448
- Millet, O.¹ Muhandiram, D.R.² Skrynnikov, N.R.³ Kay, L.E.⁴

16
- 10744232623
- Furtig, B.; Richter, C.; Bermel, W.; Schwalbe, H. J. Biomol. NMR 2004, 28, 69-79.
- (2004) J. Biomol. NMR , vol.28 , pp. 69-79
- Furtig, B.¹ Richter, C.² Bermel, W.³ Schwalbe, H.⁴

17
- 33646719091
- Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546-4559.
- (1982) J. Am. Chem. Soc. , vol.104 , pp. 4546-4559
- Lipari, G.¹ Szabo, A.²

18
- 0029800791
- Batey, R. T.; Cloutier, N.; Mao, H.; Williamson, J. R. Nucleic Acids Res. 1996, 24, 4836-4837.
- (1996) Nucleic Acids Res. , vol.24 , pp. 4836-4837
- Batey, R.T.¹ Cloutier, N.² Mao, H.³ Williamson, J.R.⁴

19
- 0034840623
- Kao, C.; Rudisser, S.; Zheng, M. Methods 2001, 23, 201-205.
- (2001) Methods , vol.23 , pp. 201-205
- Kao, C.¹ Rudisser, S.² Zheng, M.³

20
- 0028820398
- Puglisi, J. D.; Wyatt, J. R. Methods Enzymol. 1995, 261, 323-350.
- (1995) Methods Enzymol. , vol.261 , pp. 323-350
- Puglisi, J.D.¹ Wyatt, J.R.²

21
- 0029400480
- Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293.
- (1995) J. Biomol. NMR , vol.6 , pp. 277-293
- Delaglio, F.¹ Grzesiek, S.² Vuister, G.W.³ Zhu, G.⁴ Pfeifer, J.⁵ Bax, A.⁶

22
- 0024551334
- Kamath, U.; Shriver, J. W. J. Biol. Chem. 1989, 264, 5586-5592.
- (1989) J. Biol. Chem. , vol.264 , pp. 5586-5592
- Kamath, U.¹ Shriver, J.W.²

23
- 44949280676
- Geen, H.; Freeman, R. J. Magn. Reson. 1991, 93, 93-141.
- (1991) J. Magn. Reson. , vol.93 , pp. 93-141
- Geen, H.¹ Freeman, R.²

24
- 20444481878
- Kupce, E.; Freeman, R. J. Magn. Reson., Ser. A 1996, 118, 299-303.
- (1996) J. Magn. Reson., Ser. A , vol.118 , pp. 299-303
- Kupce, E.¹ Freeman, R.²

25
- 0342976767
- Marion, D.; Ikura, M.; Bax, A. J. Magn. Reson. 1989, 84, 425-430.
- (1989) J. Magn. Reson. , vol.84 , pp. 425-430
- Marion, D.¹ Ikura, M.² Bax, A.³

26
- 0034680628
- Ennifar, E.; Nikulin, A.; Tishchenko, S.; Serganov, A.; Nevskaya, N.; Garber, M.; Ehresmann, B.; Ehresmann, C.; Nikonov, S.; Dumas, P. J. Mol. Biol. 2000, 304, 35-42.
- (2000) J. Mol. Biol. , vol.304 , pp. 35-42
- Ennifar, E.¹ Nikulin, A.² Tishchenko, S.³ Serganov, A.⁴ Nevskaya, N.⁵ Garber, M.⁶ Ehresmann, B.⁷ Ehresmann, C.⁸ Nikonov, S.⁹ Dumas, P.¹⁰

27
- 0345983583
- Leontis, N. B., SantaLucia, J., Jr., Eds.; ACS Symposium Series 682; American Chemical Society: Washington, DC
- Macke, T. J.; Case, D. A. In Molecular Modeling of Nucleic Acids; Leontis, N. B., SantaLucia, J., Jr., Eds.; ACS Symposium Series 682; American Chemical Society: Washington, DC, 1998; pp 379-393.
- (1998) Molecular Modeling of Nucleic Acids , pp. 379-393
- Macke, T.J.¹ Case, D.A.²

28
- 84986512474
- Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem, 1983, 4, 187-217.
- (1983) J. Comput. Chem , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.⁶

29
- 0000214231
- MacKerell, A. D.; Banavali, N. K. J. Comput. Chem. 2000, 21, 105-120.
- (2000) J. Comput. Chem. , vol.21 , pp. 105-120
- MacKerell, A.D.¹ Banavali, N.K.²

30
- 0003943480
- Clarendon Press; Oxford
- Abragam, A. Principles of Nuclear Magnetism; Clarendon Press; Oxford, 1961.
- (1961) Principles of Nuclear Magnetism
- Abragam, A.¹

31
- 33644625296
- Woessner, D. E. J. Chem. Phys. 1962, 37, 647-654.
- (1962) J. Chem. Phys. , vol.37 , pp. 647-654
- Woessner, D.E.¹

32
- 0029550886
- Tjandra, N.; Feller, S. E.; Pastor, R. W.; Bax, A. J. Am. Chem. Soc. 1995, 117, 12562-12566.
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 12562-12566
- Tjandra, N.¹ Feller, S.E.² Pastor, R.W.³ Bax, A.⁴

33
- 0004161838
- Cambridge Univerisity Press: New York
- Press, W. H.; Flannery, B. P.; Teukolsky, S. A.; Vetterling, W. T. Numerical Recipes in C: The Art of Scientific Computing, 2nd ed.; Cambridge Univerisity Press: New York, 1992.
- (1992) Numerical Recipes in C: The Art of Scientific Computing, 2nd Ed.
- Press, W.H.¹ Flannery, B.P.² Teukolsky, S.A.³ Vetterling, W.T.⁴

34
- 0034990813
- Hwang, P. M.; Skrynnikov, N. R.; Kay, L. E. J. Biomol. NMR 2001, 20, 83-88.
- (2001) J. Biomol. NMR , vol.20 , pp. 83-88
- Hwang, P.M.¹ Skrynnikov, N.R.² Kay, L.E.³

35
- 0023694799
- Kintanar, A.; Alam, T. M.; Huang, W. C.; Schindele, D. C.; Wemmer, D. E.; Drobny, G. J. Am. Chem. Soc. 1988, 110, 6367-6372.
- (1988) J. Am. Chem. Soc. , vol.110 , pp. 6367-6372
- Kintanar, A.¹ Alam, T.M.² Huang, W.C.³ Schindele, D.C.⁴ Wemmer, D.E.⁵ Drobny, G.⁶

36
- 0032513009
- Yang, D.; Mittermaier, A.; Mok, Y. K.; Kay, L. E. J. Mol. Biol. 1998, 276, 939-954.
- (1998) J. Mol. Biol. , vol.276 , pp. 939-954
- Yang, D.¹ Mittermaier, A.² Mok, Y.K.³ Kay, L.E.⁴

37
- 0032109772
- Hoogstraten, C. G.; Pardi, A. J. Magn. Reson. 1998, 133, 236-240.
- (1998) J. Magn. Reson. , vol.133 , pp. 236-240
- Hoogstraten, C.G.¹ Pardi, A.²

38
- 0001046569
- Maltseva, T. V.; Foldesi, A.; Chattopadhyaya, J. Magn. Reson. Chem. 1999, 37, 203-213.
- (1999) Magn. Reson. Chem. , vol.37 , pp. 203-213
- Maltseva, T.V.¹ Foldesi, A.² Chattopadhyaya, J.³

39
- 33845560617
- Morris, G. A.; Freeman, R. J. Am. Chem. Soc. 1979, 101, 760-762.
- (1979) J. Am. Chem. Soc. , vol.101 , pp. 760-762
- Morris, G.A.¹ Freeman, R.²

40
- 0000793571
- Jacobsen, J. P.; Bildsoe, H. K.; Schaumburg, K. J. Magn. Reson. 1976, 25, 153-164.
- (1976) J. Magn. Reson. , vol.25 , pp. 153-164
- Jacobsen, J.P.¹ Bildsoe, H.K.² Schaumburg, K.³

41
- 0000096326
- Alam, T. M.; Drobny, G. P. Chem. Rev. 1991, 91, 1545-1590.
- (1991) Chem. Rev. , vol.91 , pp. 1545-1590
- Alam, T.M.¹ Drobny, G.P.²

42
- 0040240399
- Mantsch, H. H.; Saito, H.; Smith, I. C. P. Prog. Nucl. Magn. Reson. Spectrosc. 1977, 11, 211-271.
- (1977) Prog. Nucl. Magn. Reson. Spectrosc. , vol.11 , pp. 211-271
- Mantsch, H.H.¹ Saito, H.² Smith, I.C.P.³

43
- 0037089151
- Fernandes, M. X.; Ortega, A.; Lopez Martinez, M. C.; Garcia de la Torre, J. Nucleic Acids Res. 2002, 30, 1782-1788.
- (2002) Nucleic Acids Res. , vol.30 , pp. 1782-1788
- Fernandes, M.X.¹ Ortega, A.² Lopez Martinez, M.C.³ Garcia De La Torre, J.⁴

44
- 0025811124
- Varani, G.; Cheong, C.; Tinoco, I., Jr. Biochemistry 1991, 30, 3280-3289.
- (1991) Biochemistry , vol.30 , pp. 3280-3289
- Varani, G.¹ Cheong, C.² Tinoco Jr., I.³

45
- 0029082529
- Allain, F. H.; Varani, G. J. Mol. Biol. 1995, 250, 333-353.
- (1995) J. Mol. Biol. , vol.250 , pp. 333-353
- Allain, F.H.¹ Varani, G.²

46
- 0034723132
- Goodman, J. L.; Pagel, M. D.; Stone, M. J. J. Mol. Biol. 2000, 295, 963-978.
- (2000) J. Mol. Biol. , vol.295 , pp. 963-978
- Goodman, J.L.¹ Pagel, M.D.² Stone, M.J.³

47
- 0036293438
- Dayie, K. T.; Brodsky, A. S.; Williamson, J. R. J. Mol. Biol. 2002, 317, 263-278.
- (2002) J. Mol. Biol. , vol.317 , pp. 263-278
- Dayie, K.T.¹ Brodsky, A.S.² Williamson, J.R.³

48
- 0034664076
- Hoogstraten, C. G.; Wank, J. R.; Pardi, A. Biochemistry 2000, 39, 9951-9958.
- (2000) Biochemistry , vol.39 , pp. 9951-9958
- Hoogstraten, C.G.¹ Wank, J.R.² Pardi, A.³

49
- 0029121733
- Varani, G. Annu. Rev. Biophys. Biomol. Struct. 1995, 24, 379-404.
- (1995) Annu. Rev. Biophys. Biomol. Struct. , vol.24 , pp. 379-404
- Varani, G.¹

50
- 0026593806
- Antao, V. P.; Tinoco, I., Jr. Nucleic Acids Res. 1992, 20, 819-824.
- (1992) Nucleic Acids Res. , vol.20 , pp. 819-824
- Antao, V.P.¹ Tinoco Jr., I.²

51
- 0023973247
- Tuerk, C.; Gauss, P.; Thermes, C.; Groebe, D. R.; Gayle, M.; Guild, N.; Stormo, G.; d'Aubenton-Carafa, Y.; Uhlenbeck, O. C.; Tinoco, I.; Brody, E. N.; Gold, L. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 1364-1368.
- (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 1364-1368
- Tuerk, C.¹ Gauss, P.² Thermes, C.³ Groebe, D.R.⁴ Gayle, M.⁵ Guild, N.⁶ Stormo, G.⁷ D'Aubenton-Carafa, Y.⁸ Uhlenbeck, O.C.⁹ Tinoco, I.¹⁰ Brody, E.N.¹¹ Gold, L.¹²

52
- 12744263121
- Lindorff-Larsen, K.; Best, R. B.; Depristo, M. A.; Dobson, C. M.; Vendruscolo, M. Nature 2005, 433, 128-132.
- (2005) Nature , vol.433 , pp. 128-132
- Lindorff-Larsen, K.¹ Best, R.B.² Depristo, M.A.³ Dobson, C.M.⁴ Vendruscolo, M.⁵

53
- 3042846748
- Best, R. B.; Vendruscolo, M. J. Am. Chem. Soc. 2004, 126, 8090-8091.
- (2004) J. Am. Chem. Soc. , vol.126 , pp. 8090-8091
- Best, R.B.¹ Vendruscolo, M.²

54
- 0000885331
- Brooks, B. R.; Janezic, D.; Karplus, M. J. Comput. Chem. 1995, 16, 1522-1542.
- (1995) J. Comput. Chem. , vol.16 , pp. 1522-1542
- Brooks, B.R.¹ Janezic, D.² Karplus, M.³

55
- 0030473440
- Li, Z.; Raychaudhuri, S.; Wand, A. J. Protein Sci. 1996, 5, 2647-2650.
- (1996) Protein Sci. , vol.5 , pp. 2647-2650
- Li, Z.¹ Raychaudhuri, S.² Wand, A.J.³

56
- 0030601792
- Yang, D.; Kay, L. E. J. Mol. Biol. 1996, 263, 369-382.
- (1996) J. Mol. Biol. , vol.263 , pp. 369-382
- Yang, D.¹ Kay, L.E.²

57
- 84906393702
- Akke, M.; Bruschweiler, R.; Palmer, A. G. J. Am. Chem. Soc. 1993, 115, 9832-9833.
- (1993) J. Am. Chem. Soc. , vol.115 , pp. 9832-9833
- Akke, M.¹ Bruschweiler, R.² Palmer, A.G.³

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