Photoreduction of the folate cofactor in members of the photolyase family

Journal of Biological Chemistry

Volumn 284, Issue 32, 2009, Pages 21670-21683

  Moldt, Julia ^a   Pokomy, Richard ^a   Orth, Christian ^a   Linne, Uwe ^a   Geisselbrecht, Yann ^a   Marahiel, Mohamed A ^a   Essen, Lars Oliver ^a   Batschauer, Alfred ^a  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; AROMATIC RESIDUES; CATALYTIC CYCLES; COFACTORS; CRYPTOCHROMES; CYCLOBUTANE PYRIMIDINE DIMERS; DNA LESIONS; ELECTRON TRANSFER; FLAVIN ADENINE DINUCLEOTIDE; LIGHT EXCITATION; PHOTO-DECOMPOSITION; PHOTO-REDUCTION; PHOTOLYASES; PHOTOPRODUCTS; SINGLE-STRANDED DNA; UV RADIATION;

AMINO ACIDS; BUTANE; ELECTRON TRANSITIONS; ESCHERICHIA COLI; GENES; LIGHT TRANSMISSION; NUCLEIC ACIDS; PHOTOBLEACHING; REPAIR; ULTRAVIOLET RADIATION;

DNA;

CRYPTOCHROME; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE; SINGLE STRANDED DNA; TRYPTOPHAN;

ARABIDOPSIS; ARTICLE; BLEACHING; CHEMICAL STRUCTURE; CONTROLLED STUDY; ELECTRON TRANSPORT; EXCITATION; NONHUMAN; OXIDATION; PHOTODEGRADATION; PHOTOREACTIVITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PURIFICATION; SITE DIRECTED MUTAGENESIS;

ARABIDOPSIS; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; ELECTRONS; ESCHERICHIA COLI; FLAVOPROTEINS; LIGHT; MITOCHONDRIA; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MUTAGENESIS, SITE-DIRECTED; PYRIMIDINE DIMERS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROPHOTOMETRY; TETRAHYDROFOLATES;

ARABIDOPSIS; ESCHERICHIA COLI;

EID: 69249113400     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.018697     Document Type: Article

References (62)

1. Sancar, A. (2003) Chem. Rev. 103, 2203-2237
2. Essen, L. O., and Klar, T. (2006) Cell. Mol. Life Sci. 63, 1266-1277
3. Aubert, C., Vos, M. H., Mathis, P., Eker, A. P., and Brettel, K. (2000) Nature 405, 586-590
4. Byrdin, M., Eker, A. P., Vos, M. H., and Brettel, K. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 8676-8681
5. Brautigam, C. A., Smith, B. S., Ma, Z., Palnitkar, M., Tomchick, D. R., Machius, M., and Deisenhofer, J. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 12142-12147
6. Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V. A., Todo, T., Tainer, J. A., and Getzoff, E. D. (2003) Mol. Cell 11, 59-67
7. Huang, Y., Baxter, R., Smith, B. S., Partch, C. L., Colbert, C. L., and Deisenhofer, J. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 17701-17706
8. Klar, T., Pokorny, R., Moldt, J., Batschauer, A., and Essen, L. O. (2007) J. Mol. Biol. 366, 954-964
9. Park, H. W., Kim, S. T., Sancar, A., and Deisenhofer, J. (1995) Science 268, 1866-1872
10. Kavakli, I. H., and Sancar, A. (2004) Biochemistry 43, 15103-15110
11. Banerjee, R., Schleicher, E., Meier, S., Viana, R. M., Pokorny, R., Ahmad, M., Bittl, R., and Batschauer, A. (2007) J. Biol. Chem. 282, 14916-14922
12. Berndt, A., Kottke, T., Breitkreuz, H., Dvorsky, R., Hennig, S., Alexander, M., and Wolf, E. (2007) J. Biol. Chem. 282, 13011-13021
13. Bouly, J. P., Schleicher, E., Dionisio-Sese, M., Vandenbussche, F., Van Der Straeten, D., Bakrim, N., Meier, S., Batschauer, A., Galland, P., Bittl, R., and Ahmad, M. (2007) J. Biol. Chem. 282, 9383-9391
14. Hoang, N., Schleicher, E., Kacprzak, S., Bouly, J. P., Picot, M., Wu, W., Berndt, A., Wolf, E., Bittl, R., and Ahmad, M. (2008) PLoS Biol. 6, e160
15. Daiyasu, H., Ishikawa, T., Kuma, K., Iwai, S., Todo, T., and Toh, H. (2004) Genes Cells 9, 479-495
16. Kleine, T., Lockhart, P., and Batschauer, A. (2003) Plant J. 35, 93-103
17. Worthington, E. N., Kavakli, I. H., Berrocal-Tito, G., Bondo, B. E., and Sancar, A. (2003) J. Biol. Chem. 278, 39143-39154
18. Selby, C. P., and Sancar, A. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 17696-17700
19. Pokorny, R., Klar, T., Hennecke, U., Carell, T., Batschauer, A., and Essen, L. O. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 21023-21027
20. Johnson, J. L., Hamm-Alvarez, S., Payne, G., Sancar, G. B., Rajagopalan, K. V., and Sancar, A. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 2046-2050
21. Pokorny, R., Klar, T., Essen, L. O., and Batschauer, A. (2005) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 61, 935-938
22. Eker, A. P., Kooiman, P., Hessels, J. K., and Yasui, A. (1990) J. Biol. Chem. 265, 8009-8015
23. Ueda, T., Kato, A., Kuramitsu, S., Terasawa, H., and Shimada, I. (2005) J. Biol. Chem. 280, 36237-36243
24. Fujihashi, M., Numoto, N., Kobayashi, Y., Mizushima, A., Tsujimura, M., Nakamura, A., Kawarabayasi, Y., and Miki, K. (2007) J. Mol. Biol. 365, 903-910
25. Payne, G., and Sancar, A. (1990) Biochemistry 29, 7715-7727
26. Kim, S. T., Heelis, P. F., and Sancar, A. (1992) Biochemistry 31, 11244-11248
27. Song, S. H., Dick, B., Penzkofer, A., Pokorny, R., Batschauer, A., and Essen, L. O. (2006) J. Photochem. Photobiol. B 85, 1-16
28. Heelis, P. F., Payne, G., and Sancar, A. (1987) Biochemistry 26, 4634-4640
29. Jorns, M. S., Wang, B., and Jordan, S. P. (1987) Biochemistry 26, 6810-6816
30. Hamm-Alvarez, S., Sancar, A., and Rajagopalan, K. V. (1989) J. Biol. Chem. 264, 9649-9656
31. Jorns, M. S., Wang, B. Y., Jordan, S. P., and Chanderkar, L. P. (1990) Biochemistry 29, 552-561
32. D'Ari, L., and Rabinowitz, J. C. (1991) J. Biol. Chem. 266, 23953-23958
33. Xu, L., Zhang, D., Mu, W., van Berkel, W. J., and Luo, Z. (2006) Biochim. Biophys. Acta 1764, 1454-1461
34. Dev, I. K., and Harvey, R. J. (1978) J. Biol. Chem. 253, 4245-4253
35. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800
36. Royant, A., Carpentier, P., Ohana, J., McGeehan, J., Paetzold, B., Noirclerc-Savoye, M., Vernede, X., Adam, V., and Bourgeois, D. (2007) J. Appl. Crystallogr. 40, 1105-1112
37. CCP4. (1994) Acta Crystallogr. D Biol. Crystallog. 50, 760-763
38. Li, Y. F., Heelis, P. F., and Sancar, A. (1991) Biochemistry 30, 6322-6329
39. Osborn, M. J., Talbert, P. T., and Huennekens, F. M. (1960) J. Am. Chem. Soc. 82, 4921-4927
40. Wang, B., and Jorns, M. S. (1989) Biochemistry 28, 1148-1152
41. Quinlivan, E. P., Hanson, A. D., and Gregory, J. F. (2006) Anal. Biochem. 348, 163-184
42. De Brouwer, V., Zhang, G. F., Storozhenko, S., Straeten, D. V., and Lambert, W. E. (2007) Phytochem. Anal. 18, 496-508
43. Tyagi, A., Penzkofer, A., Batschauer, A., and Wolf, E. (2009) Chem. Phys. 358, 132-136
44. Sancar, A. (2008) J. Biol. Chem. 283, 32153-32157
45. Hitomi, K., Kim, S. T., Iwai, S., Harima, N., Otoshi, E., Ikenaga, M., and Todo, T. (1997) J. Biol. Chem. 272, 32591-32598
46. Malhotra, K., Baer, M., Li, Y. F., Sancar, G. B., and Sancar, A. (1992) J. Biol. Chem. 267, 2909-2914
47. Maul, M. J., Barends, T. R., Glas, A. F., Cryle, M. J., Domratcheva, T., Schneider, S., Schlichting, I., and Carell, T. (2008) Angew. Chem. Int. Ed. Engl. 47, 10076-10080
48. Mees, A., Klar, T., Gnau, P., Hennecke, U., Eker, A. P., Carell, T., and Essen, L. O. (2004) Science 306, 1789-1793
49. Horne, D. W. (2001) Anal. Biochem. 297, 154-159
50. Thauer, R. K., Klein, A. R., and Hartmann, G. C. (1996) Chem. Rev. 96, 3031-3042
51. Balland, V., Byrdin, M., Eker, A. P., Ahmad, M., and Brettel, K. (2009) J. Am. Chem. Soc. 131, 426-427
52. Scannell, M. P., Fenick, D. J., Yeh, S.-R., and Falvey, D. E. (1997) J. Am. Chem. Soc. 119, 1971-1977
53. Yeh, S. R., and Falvey, D. E. (1992) J. Am. Chem. Soc. 114, 7313-7314
54. Scannell, M. P., Prakash, G., and Falvey, D. E. (1997) J. Phys. Chem. A 101, 4332-4337
55. Hanson, A. D., and Roje, S. (2001) Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 119-137
56. Rébeillé, F., Ravanel, S., Jabrin, S., Douce, R., Storozhenko, S., and Van Der Straeten, D. (2006) Physiol. Plant 126, 330-342
57. Ravanel, S., Gakière, B., Job, D., and Douce, R. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 7805-7812
58. Jabrin, S., Ravanel, S., Gambonnet, B., Douce, R., and Rébeillé, F. (2003) Plant Physiol 131, 1431-1439
59. Van Wilder, V., De Brouwer, V., Loizeau, K., Gambonnet, B., Albrieux, C., Van Der Straeten, D., Lambert, W. E., Douce, R., Block, M. A., Rebeille, F., and Ravanel, S. (2008) New Phytol. 182, 137-145
60. Cossins, E. A., and Chen, L. (1997) Phytochemistry 45, 437-452
61. Hanson, A. D., Gage, D. A., and Shachar-Hill, Y. (2000) Trends Plant Sci. 5, 206-213
62. Douce, R., Bourguignon, J., Neuburger, M., and Rébeillé, F. (2001) Trends Plant Sci. 6, 167-176