Phytochrome interacting factors (PIFs) in plant

Plant Physiology Communications

Volumn 45, Issue 6, 2009, Pages 531-536

  Zhao, Xiao Ling ^a  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 69049090878     PISSN: 04120922     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (34)

1. Alabadi D, Oyama T, Yanovsky MJ, Harmon FG, Mas P, Kay SA(2001). Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock. Science, 293: 880-883
2. Al-Sady B, Ni W, Kircher S, Schafer E, Quail PH (2006). Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol Cell, 23: 439-446
3. Bailey PC, Martin C, Toledo-Ortiz G, Quail PH, Huq E, Heim MA, Jakoby M, Werber M, Weisshaar B (2003). Update on ■ the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 15 (11): 2497-2502
4. Bauer D, Viczian A, Kircher S, Nobis T, Nitschke R, Kunkel T, Panigrahi KC, Adam E, Fejes E, Schafer E et al (2004). Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell, 16: 1433-1445
5. Duek PD, Fankhauser C (2003). HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signaling. Plant J, 34: 827-836
6. Fairchild CD, Schumaker MA, Quail PH (2000). HFR1 encodes an atypical bHLH protein that acts in phytochrome a signal transduction. Genes Dev, 14: 2377-2391
7. Franklin KA, Whitelam GC (2004). Light signals, phytochromes and cross-talk with other environmental cues. J Exp Bot, 55: 271-276
8. Fujimori T, Yamashino T, Kato T, Mizuno T (2004). Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana. Plant Cell Physiol, 45: 1078-1086
9. Hughes J, Lamparter T, Mittmann F (1997). A prokaryotic phytochrome. Nature, 386 (6626): 663
10. Huq E, Al-Sady B, Hudson M, Kim C, Apel K, Quail PH (2004). Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science, 305: 1937-1941
11. Huq E, Quail PH (2002). PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator. EMBO J, 21 (10): 2441-2450
12. Jiao Y, Lau OS, Deng XW (2007). Light-regulated transcriptional networks in higher plants. Nat Rev Genet, 8: 217-230
13. Khanna R, Huq E, Kikis EA, Al-Sady B, Lanzatella C, Quail PH (2004). A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell, 16: 3033-3044
14. Kim J, Yi H, Choi G, Shin B, Song PS, Choi G (2003). Functional characterization of phytochrome interacting factor 3 in phyochrome-mediated light signal transduction. Plant Cell, 15: 2399-2407
15. Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH (2008). The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell, 20: 337-352
16. Li XX, Duan XP, Jiang HX, Sun YJ, Tang YP, Yuan Z, Guo JK, Liang WQ, Chen L, Yin JY et al (2006). Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol, 141: 1167-1184
17. Makino S, Matsushika.A, Kojima M, Yamashino T, Mizuno T (2002). The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRRl-overexpressing plants. Plant Cell Physiol, 43 (1): 58-69
18. Massari ME, Murre C (2000). Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol Cell Biol, 20: 429-440
19. Monte E, Tepperman JM, Al-Sady B, Kaczorowski KA, Alonso JM, Ecker JR, Li X, Zhang Y, Quail PH (2004). The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci USA, 101: 16091-16098
20. Nagatani A (2004). Light-regulated nuclear localization of phytochromes. Curr Opin Plant Biol, 7: 708-711
21. Nakamura Y, Kato T, Yamshino T, Murakami M, Mizuno T (2007). Characterization of a set of phytochrome-interacting factor-like Bhlh proteins in Oryza sativa. Biosci Biotechnol Biochem, 71: 1183-1191
22. Ni M, Tepperman JM, Quail PH (1998). PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell, 95: 657-667
23. Ni M, Tepperman JM, Quail PH (1999). Binding of phytochrome B to its nuclear signaling partner PIF3 is reversibly induced by light. Nature, 400: 781-784
24. Oh E, Kim J, Park E, Kim JI, Kang C, Choi G (2004). PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell, 16: 3045-3058
25. Park E, Kim J, Lee Y, Shin J, Oh E, Chung WI, Liu JR, Choi G (2004). Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling. Plant Cell Physiol, 45: 968-997
26. Park HJ, Ding L, Dai M, Lin R, Wan H (2008). Multisite phosphorylation of Arabidopsis HFR1 by casein kinase II and a plausible role in regulating its degradation rate. J Biol Chem, 283 (34): 23264-23273
27. Quail PH (2002). Phytochrome photosensory signalling networks. Nat Rev Mol Cell Biol, 3: 85-93
28. Salter MG, Franklin KA, Whitelam GC (2003). Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature, 426: 680-683
29. Schepens I, Duek P, Fankhauser C (2004). Phytochrome-medi-ated light signalling in Arabidopsis. Curr Opin Plant Biol, 7 (5): 564-569
30. Tepperman JM, Hwang YS, Quail PH (2006). PhyA dominates in transduction of red-light signals to rapidly-responding genes at the initiation of Arabidopsis seedling de-etiolation. Plant J, 48: 728-742
31. Toledo-Ortiz G, Huq E, Quail PH (2003). The Arabidopsis basic/ helix-loop-helix transcription factor family. Plant Cell, 15: 1749-1770
32. Viczian A, Kircher S, Fejes E, Millar AJ, Schafer E, Kozma-Bognar L, Nagy F (2005). Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork. Plant Cell Physiol, 46: 1591-1602
33. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T (2003). A link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol, 44: 619-629
34. Zhu Y, Tepperman JM, Fairchild CD, Quail PH (2000). Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3. Proc Natl Acad Sci USA, 97 (24): 13419-13424