Functional Characterization of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signal Transduction

Plant Cell

Volumn 15, Issue 10, 2003, Pages 2399-2407

  Kim, Jonghyun ^a   Yi, Hankuil ^b   Choi, Goh ^b   Shin, Byongchul ^b   Song, Pill Soon ^b   Choi, Giltsu ^a,b  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Kumho Life and Environ Sci Lab   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEINS;

PHYTOCHROMES;

PLANTS (BOTANY);

ARABIDOPSIS;

EID: 0142124082     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.014498     Document Type: Article

References (48)

1. Borevitz, J.O., Maloof, J.N., Lutes, J., Dabi, T., Redfern, J.L., Trainer, G.T., Werner, J.D., Asami, T., Berry, C.C., Weigel, D., and Chory, J. (2002). Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 160, 683-696.
2. Brownlie, P., Ceska, T., Lamers, M., Romier, C., Stier, G., Teo, H., and Suck, D. (1997). The crystal structure of an intact human Max-DNA complex: New insights into mechanisms of transcriptional control. Structure 5, 509-520.
3. Choe, S., Fujioka, S., Noguchi, T., Takatsuto, S., Yoshida, S., and Feldmann, K.A. (2001). Overexpression of DWARF4 in the brassinosteroid biosynthetic pathway results in increased vegetative growth and seed yield in Arabidopsis. Plant J. 26, 573-582.
4. Clack, T., Mathews, S., and Sharrock, R.A. (1994). The phytochrome apoprotein family in Arabidopsis is encoded by five genes: The sequences and expression of PHYD and PHYE. Plant Mol. Biol. 25, 413-427.
5. Ellenberger, T., Pass, D., Arnaud, M., and Harrison, S.C. (1994). Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer. Genes Dev. 8, 970-980.
6. Fairchild, C.D., Schumaker, M.A., and Quail, P.H. (2000). HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 14, 2377-2391.
7. Ferre-D'Amare, A.R., Prendergast, G.C., Ziff, E.B., and Burley, S.K. (1993). Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature 363, 38-45.
8. Friedrichsen, D.M., Joazeiro, C.A., Li, J., Hunter, T., and Chory, J. (2000). Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase. Plant Physiol. 123, 1247-1256.
9. Halliday, K.J., Hudson, M., Ni, M., Qin, M., and Quail, P.H. (1999). poc1: An Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein. Proc. Natl. Acad. Sci. USA 96, 5832-5837.
10. Hamilton, A.J., and Baulcombe, D.C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286, 950-952.
11. Hudson, M.E. (2000). The genetics of phytochrome signalling in Arabidopsis. Semin. Cell Dev. Biol. 11, 475-483.
12. Ivanov, A.G., Krol, M., Maxwell, D., and Huner, N.P. (1995). Abscisic acid induced protection against photoinhibition of PSII correlates with enhanced activity of the xanthophyll cycle. FEBS Lett. 371, 61-64.
13. Jensen, P.J., Hangarter, R.P., and Estelle, M. (1998). Auxin transport is required for hypocotyl elongation in light-grown but not dark-grown Arabidopsis. Plant Physiol. 116, 455-462.
14. Kim, Y.M., Woo, J.C., Song, P.S., and Soh, M.S. (2002). HFR1, a phytochrome A-signalling component, acts in a separate pathway from HY5, downstream of COP1 in Arabidopsis thaliana. Plant J. 30, 711-719.
15. Kircher, S., Kozma-Bognar, L., Kim, L., Adam, E., Harter, K., Schafer, E., and Nagy, F. (1999). Light quality-dependent nuclear import of the plant photoreceptors phytochrome A and B. Plant Cell 11, 1445-1456.
16. Laby, R.J., Kincaid, M.S., Kim, D., and Gibson, S.I. (2000). The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response. Plant J. 23, 587-596.
17. Lincoln, C., Britton, J.H., and Estelle, M. (1990). Growth and development of the axr1 mutants of Arabidopsis. Plant Cell 2, 1071-1080.
18. Liu, X.L., Covington, M.F., Fankhauser, C., Chory, J., and Wagner, D.R. (2001). ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell 13, 1293-1304.
19. Ma, L., Li, J., Qu, L., Hager, J., Chen, Z., Zhao, H., and Deng, X.W. (2001). Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell 13, 2589-2607.
20. Martinez-Garcia, J.F., Huq, E., and Quail, P.H. (2000). Direct targeting of light signals to a promoter element-bound transcription factor. Science 288, 859-863.
21. Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.R., Carre, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2, 629-641.
22. Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant. 15, 473-497.
23. Nagatani, A., Reed, J.W., and Chory, J. (1993). Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A. Plant Physiol. 102, 269-277.
24. Neff, M.M., Fankhauser, C., and Chory, J. (2000). Light: An indicator of time and place. Genes Dev. 14, 257-271.
25. Ni, M., Tepperman, J.M., and Quail, P.H. (1998). PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell 95, 657-667.
26. Ni, M., Tepperman, J.M., and Quail, P.H. (1999). Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light. Nature 400, 781-784.
27. Parks, B.M., and Quail, P.H. (1993). hy8, a new class of Arabidopsis long hypocotyl mutants deficient in functional phytochrome A. Plant Cell 5, 39-48.
28. Quail, P.H. (2000). Phytochrome-interacting factors. Semin. Cell Dev. Biol. 11, 457-466.
29. Quail, P.H. (2002). Phytochrome photosensory signalling networks. Nat. Rev. Mol. Cell Biol. 3, 85-93.
30. Quail, P.H., Boylan, M.T., Parks, B.M., Short, T.W., Xu, Y., and Wagner, D. (1995). Phytochromes: Photosensory perception and signal transduction. Science 268, 675-680.
31. Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M., and Chory, J. (1993). Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell 5, 147-157.
32. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carre, I.A., and Coupland, G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93, 1219-1229.
33. Sharrock, R.A., and Quail, P.H. (1989). Novel phytochrome sequences in Arabidopsis thaliana: Structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 3, 1745-1757.
34. Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., and Hakoshima, T. (1997). Crystal structure of PHO4 bHLH domain-DNA complex: Flanking base recognition. EMBO J. 16, 4689-4697.
35. Shinomura, T., Nagatani, A., Hanzawa, H., Kubota, M., Watanabe, M., and Furuya, M. (1996). Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93, 8129-8133.
36. Soh, M.S., Kim, Y.M., Han, S.J., and Song, P.S. (2000). REP1, a basic helix-loop-helix protein, is required for a branch pathway of phytochrome A signaling in Arabidopsis. Plant Cell 12, 2061-2074.
37. Somers, D.E., Sharrock, R.A., Tepperman, J.M., and Quail, P.H. (1991). The hy3 long hypocotyl mutant of Arabidopsis is deficient in phytochrome B. Plant Cell 3, 1263-1274.
38. Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X., and Quail, P.H. (2001). Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl. Acad. Sci. USA 98, 9437-9442.
39. Thomas, C.L., Jones, L., Baulcombe, D.C., and Maule, A.J. (2001). Size constraints for targeting post-transcriptional gene silencing and for RNA-directed methylation in Nicotiana benthamiana using a potato virus X vector. Plant J. 25, 417-425.
40. Tseng, T.S., Swain, S.M., and Olszewski, N.E. (2001). Ectopic expression of the tetratricopeptide repeat domain of SPINDLY causes defects in gibberellin response. Plant Physiol. 126, 1250-1258.
41. Wang, H., Ma, L., Habashi, J., Li, J., Zhao, H., and Deng, X.W. (2002). Analysis of far-red light-regulated genome expression profiles of phytochrome A pathway mutants in Arabidopsis. Plant J. 32, 723-733.
42. Wang, Z.Y., Kenigsbuch, D., Sun, L., Harel, E., Ong, M.S., and Tobin, E.M. (1997). A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell 9, 491-507.
43. Weatherwax, S.C., Ong, M.S., Degenhardt, J., Bray, E.A., and Tobin, E.M. (1996). The interaction of light and abscisic acid in the regulation of plant gene expression. Plant Physiol. 111, 363-370.
44. Winkel-Shirley, B. (2001). Flavonoid biosynthesis: A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 126, 485-493.
45. Yamaguchi, R., Nakamura, M., Mochizuki, N., Kay, S.A., and Nagatani, A. (1999). Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis. J. Cell Biol. 145, 437-445.
46. Yanovsky, M.J., Casal, J.J., and Luppi, J.P. (1997). The VLF loci, polymorphic between ecotypes Landsberg erecta and Columbia, dissect two branches of phytochrome A signal transduction that correspond to very-low-fluence and high-irradiance responses. Plant J. 12, 659-667.
47. Zagotta, M.T., Hicks, K.A., Jacobs, C.I., Young, J.C., Hangarter, R.P., and Meeks-Wagner, D.R. (1996). The Arabidopsis ELF3 gene regulates vegetative photomorphogenesis and the photoperiodic induction of flowering. Plant J. 10, 691-702.
48. Zhu, Y., Tepperman, J.M., Fairchild, C.D., and Quail, P.H. (2000). Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3. Proc. Natl. Acad. Sci. USA 97, 13419-13424.