-
2
-
-
33645113551
-
Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus
-
KT Averbeck TH Eickbush 2005 Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus Genetics 171 4 1837 1846
-
(2005)
Genetics
, vol.171
, Issue.4
, pp. 1837-1846
-
-
Averbeck, K.T.1
Eickbush, T.H.2
-
3
-
-
0029866646
-
The galvanization of biology: A growing appreciation for the roles of zinc
-
JM Berg Y Shi 1996 The galvanization of biology: a growing appreciation for the roles of zinc Science 271 5252 1081 1085
-
(1996)
Science
, vol.271
, Issue.5252
, pp. 1081-1085
-
-
Berg, J.M.1
Shi, Y.2
-
4
-
-
33749522239
-
Junk DNA as an evolutionary force
-
C Biémont C Vieira 2006 Junk DNA as an evolutionary force Nature 443 521 524
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biémont, C.1
Vieira, C.2
-
5
-
-
0000557527
-
Behavior of polytene chromosomes of Rhynchosciara angelae at different stages of larval development
-
ME Breuer C Pavan 1955 Behavior of polytene chromosomes of Rhynchosciara angelae at different stages of larval development Chromosoma 7 371 386
-
(1955)
Chromosoma
, vol.7
, pp. 371-386
-
-
Breuer, M.E.1
Pavan, C.2
-
6
-
-
0023351699
-
The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzyme
-
WD Burke CC Calalang TH Eickbush 1987 The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzyme Mol Cell Biol 7 6 2221 2230
-
(1987)
Mol Cell Biol
, vol.7
, Issue.6
, pp. 2221-2230
-
-
Burke, W.D.1
Calalang, C.C.2
Eickbush, T.H.3
-
7
-
-
0027535644
-
Sequence relationship of retrotransposable elements R1 and R2 within and between divergent insect species
-
WD Burke DG Eickbush Y Xiong J Jakubczak TH Eickbush 1993 Sequence relationship of retrotransposable elements R1 and R2 within and between divergent insect species Mol Biol Evol 10 1 163 185
-
(1993)
Mol Biol Evol
, vol.10
, Issue.1
, pp. 163-185
-
-
Burke, W.D.1
Eickbush, D.G.2
Xiong, Y.3
Jakubczak, J.4
Eickbush, T.H.5
-
8
-
-
0032955930
-
The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods
-
WD Burke HS Malik JP Jones TH Eickbush 1999 The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods Mol Biol Evol 16 4 502 511
-
(1999)
Mol Biol Evol
, vol.16
, Issue.4
, pp. 502-511
-
-
Burke, W.D.1
Malik, H.S.2
Jones, J.P.3
Eickbush, T.H.4
-
9
-
-
0036668567
-
Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
-
SA Bustin 2002 Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems J Mol Endocrinol 29 23 39
-
(2002)
J Mol Endocrinol
, vol.29
, pp. 23-39
-
-
Bustin, S.A.1
-
10
-
-
29144536663
-
Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction
-
SM Christensen A Bibillo TH Eickbush 2005 Role of the Bombyx mori R2 element N-terminal domain in the target-primed reverse transcription (TPRT) reaction Nucleic Acids Res 33 20 6461 6468
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
, pp. 6461-6468
-
-
Christensen, S.M.1
Bibillo, A.2
Eickbush, T.H.3
-
11
-
-
0028870386
-
Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup
-
DG Eickbush TH Eickbush 1995 Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup Genetics 139 2 671 684
-
(1995)
Genetics
, vol.139
, Issue.2
, pp. 671-684
-
-
Eickbush, D.G.1
Eickbush, T.H.2
-
12
-
-
0038246255
-
Transcription of endogenous and exogenous R2 elements in the rRNA gene locus of Drosophila melanogaster
-
DG Eickbush TH Eickbush 2003 Transcription of endogenous and exogenous R2 elements in the rRNA gene locus of Drosophila melanogaster Mol Cell Biol 23 11 3825 3836
-
(2003)
Mol Cell Biol
, vol.23
, Issue.11
, pp. 3825-3836
-
-
Eickbush, D.G.1
Eickbush, T.H.2
-
13
-
-
0022125780
-
Bombyx mori 28 S ribosomal genes contain insertion elements similar to the Type I and II elements of Drosophila melanogaster
-
TH Eickbush B Robins 1985 Bombyx mori 28 S ribosomal genes contain insertion elements similar to the Type I and II elements of Drosophila melanogaster EMBO J 4 9 2281 2285
-
(1985)
EMBO J
, vol.4
, Issue.9
, pp. 2281-2285
-
-
Eickbush, T.H.1
Robins, B.2
-
14
-
-
0033986777
-
Integration of Bombyx mori R2 sequences into the 28 S ribosomal RNA genes of Drosophila melanogaster
-
DG Eickbush DD Luan TH Eickbush 2000 Integration of Bombyx mori R2 sequences into the 28 S ribosomal RNA genes of Drosophila melanogaster Mol Cell Biol 20 1 213 223
-
(2000)
Mol Cell Biol
, vol.20
, Issue.1
, pp. 213-223
-
-
Eickbush, D.G.1
Luan, D.D.2
Eickbush, T.H.3
-
15
-
-
53549088060
-
Epigenetic regulation of retrotransposon within the nucleolus of Drosophila
-
DG Eickbush J Ye X Zhang WD Burke TH Eickbush 2008 Epigenetic regulation of retrotransposon within the nucleolus of Drosophila Mol Cell Biol 28 20 6452 6461
-
(2008)
Mol Cell Biol
, vol.28
, Issue.20
, pp. 6452-6461
-
-
Eickbush, D.G.1
Ye, J.2
Zhang, X.3
Burke, W.D.4
Eickbush, T.H.5
-
16
-
-
0031978181
-
Base-calling of automated sequencer traces using phred, 2. Error probabilities
-
B Ewing P Green 1998 Base-calling of automated sequencer traces using phred, 2. Error probabilities Genome Res 8 186 194
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
17
-
-
0031955518
-
Basecalling of automated sequencer traces using phred, 1. Accuracy assessment
-
B Ewing LD Hillier MC Wendl P Green 1998 Basecalling of automated sequencer traces using phred, 1. Accuracy assessment Genome Res 8 175 185
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.D.2
Wendl, M.C.3
Green, P.4
-
18
-
-
0024505998
-
Eukaryotic transposable elements and genome evolution
-
DJ Finnegan 1989 Eukaryotic transposable elements and genome evolution Trends Genet 5 4 103 107
-
(1989)
Trends Genet
, vol.5
, Issue.4
, pp. 103-107
-
-
Finnegan, D.J.1
-
20
-
-
0015387462
-
Ribosomal RNA genes in salivary gland and ovary of Rhynchosclara angelae
-
AG Gambarini R Meneghini 1972 Ribosomal RNA genes in salivary gland and ovary of Rhynchosclara angelae J. Cell Biol. 54 2 421 426
-
(1972)
J. Cell Biol.
, vol.54
, Issue.2
, pp. 421-426
-
-
Gambarini, A.G.1
Meneghini, R.2
-
21
-
-
0029670588
-
Analysis of the 5′ junctions of R2 insertions with the 28 S gene: Implications for non-LTR retrotransposition
-
JA George WD Burke TH Eickbush 1996 Analysis of the 5′ junctions of R2 insertions with the 28 S gene: implications for non-LTR retrotransposition Genetics 142 3 853 863
-
(1996)
Genetics
, vol.142
, Issue.3
, pp. 853-863
-
-
George, J.A.1
Burke, W.D.2
Eickbush, T.H.3
-
23
-
-
33750442556
-
Characteristics of the nuclear (18 S, 5.8 S, 28 S and 5 S) and mitochondrial (12 S and 16 S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements
-
Gillespie JJ, Johnston JS, Cannone JJ, Gutell RR (2006) Characteristics of the nuclear (18 S, 5.8 S, 28 S and 5 S) and mitochondrial (12 S and 16 S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements. Insect Mol Biol 15(5):657-686
-
(2006)
Insect Mol Biol
, vol.15
, Issue.5
, pp. 657-686
-
-
Gillespie, J.J.1
Johnston, J.S.2
Cannone, J.J.3
Gutell, R.R.4
-
24
-
-
0017609015
-
A novel arrangement of the 18 S and 28 S sequences in a repeating unit of Drosophila melanogaster rDNA
-
DM Glover DS Hogness 1977 A novel arrangement of the 18 S and 28 S sequences in a repeating unit of Drosophila melanogaster rDNA Cell 10 2 167 176
-
(1977)
Cell
, vol.10
, Issue.2
, pp. 167-176
-
-
Glover, D.M.1
Hogness, D.S.2
-
25
-
-
0031955116
-
Consedi a graphical tool for sequence finishing
-
D Gordon C Abajian P Green 1998 Consedi a graphical tool for sequence finishing Genome Res 8 195 202
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
26
-
-
0026729098
-
Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster
-
JL Jakubczak MK Zenni RC Woodruff TH Eickbush 1992 Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster Genetics 131 1 129 142
-
(1992)
Genetics
, vol.131
, Issue.1
, pp. 129-142
-
-
Jakubczak, J.L.1
Zenni, M.K.2
Woodruff, R.C.3
Eickbush, T.H.4
-
27
-
-
0021459207
-
The rare transcripts of interrupted rRNA genes in Drosophila melanogaster are processed or degraded during synthesis
-
M Jamrich OL Miller Jr 1984 The rare transcripts of interrupted rRNA genes in Drosophila melanogaster are processed or degraded during synthesis EMBO J 3 7 1541 1545
-
(1984)
EMBO J
, vol.3
, Issue.7
, pp. 1541-1545
-
-
Jamrich, M.1
Miller Jr., O.L.2
-
28
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
[Review]
-
HH Kazazian Jr 2004 Mobile elements: drivers of genome evolution. [Review] Science 303 5664 1626 1632
-
(2004)
Science
, vol.303
, Issue.5664
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
29
-
-
0024458860
-
Isolation and characterization of ribosomal DNA variants from Sciara coprophila
-
AW Kerrebrock R Srivastava SA Gerbi 1989 Isolation and characterization of ribosomal DNA variants from Sciara coprophila J Mol Biol 210 1 13
-
(1989)
J Mol Biol
, vol.210
, pp. 1-13
-
-
Kerrebrock, A.W.1
Srivastava, R.2
Gerbi, S.A.3
-
30
-
-
6944222936
-
Laboratory culture of Rhynchosciara angelae
-
FJS Lara H Tamaki C Pavan 1965 Laboratory culture of Rhynchosciara angelae Am Nature 99 189 191
-
(1965)
Am Nature
, vol.99
, pp. 189-191
-
-
Lara, F.J.S.1
Tamaki, H.2
Pavan, C.3
-
31
-
-
0018572716
-
Expression of ribosomal DNA insertions in Drosophila melanogaster
-
EO Long IB Dawid 1979 Expression of ribosomal DNA insertions in Drosophila melanogaster Cell 18 1185 1196
-
(1979)
Cell
, vol.18
, pp. 1185-1196
-
-
Long, E.O.1
Dawid, I.B.2
-
32
-
-
6944242874
-
DNA replication and DNA puffs in salivary chromosomes of Rhynchosciara
-
GM Machado-Santelli R Basile 1975 DNA replication and DNA puffs in salivary chromosomes of Rhynchosciara Ciência e Cultura 27 2 167 174
-
(1975)
Ciência e Cultura
, vol.27
, Issue.2
, pp. 167-174
-
-
MacHado-Santelli, G.M.1
Basile, R.2
-
33
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
RDM Page 1996 TREEVIEW: An application to display phylogenetic trees on personal computers Comput Appl Biosci 12 357 358
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
34
-
-
0036811729
-
Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster
-
CE Pérez-González TH Eickbush 2002 Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster Genetics 162 2 799 811
-
(2002)
Genetics
, vol.162
, Issue.2
, pp. 799-811
-
-
Pérez-González, C.E.1
Eickbush, T.H.2
-
36
-
-
49349110962
-
Molecular characterization of a retrotransposon in the Rhynchosciara americana genome and its association with telomere
-
P Rezende-Teixeira F Siviero AS Brandão RV Santelli GM Machado-Santelli 2008 Molecular characterization of a retrotransposon in the Rhynchosciara americana genome and its association with telomere Chromosome Res 16 5 729 742
-
(2008)
Chromosome Res
, vol.16
, Issue.5
, pp. 729-742
-
-
Rezende-Teixeira, P.1
Siviero, F.2
Brandão, A.S.3
Santelli, R.V.4
MacHado-Santelli, G.M.5
-
37
-
-
0019496338
-
Arrangements and rearrangements of sequences flanking the two types of rDNA insertion in D. melanogaster
-
H Roiha JR Miller LC Woods DM Glover 1981 Arrangements and rearrangements of sequences flanking the two types of rDNA insertion in D. melanogaster Nature 290 5809 749 753
-
(1981)
Nature
, vol.290
, Issue.5809
, pp. 749-753
-
-
Roiha, H.1
Miller, J.R.2
Woods, L.C.3
Glover, D.M.4
-
38
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Evol Biol 4 4 406 425
-
(1987)
Mol Evol Biol
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0034019388
-
A simplified CsCl protocol for lambda DNA purification: No enzymatic treatment/one phenol extraction
-
RV Santelli LD Navarro-Cattapan 2000 A simplified CsCl protocol for lambda DNA purification: no enzymatic treatment/one phenol extraction Gen Mol Biol 23 1 65 66
-
(2000)
Gen Mol Biol
, vol.23
, Issue.1
, pp. 65-66
-
-
Santelli, R.V.1
Navarro-Cattapan, L.D.2
-
43
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
44
-
-
0017809230
-
X and Y chromosomal ribosomal DNA of Drosophila: Comparison of spacers and insertions
-
PK Wellauer IB Dawid KD Tartof 1978 X and Y chromosomal ribosomal DNA of Drosophila: comparison of spacers and insertions Cell 14 2 269 278
-
(1978)
Cell
, vol.14
, Issue.2
, pp. 269-278
-
-
Wellauer, P.K.1
Dawid, I.B.2
Tartof, K.D.3
-
45
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
T Wicker F Sabot A Hua-Van et al. 2007 A unified classification system for eukaryotic transposable elements Nat Rev Genet 8 12 973 982
-
(2007)
Nat Rev Genet
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
-
46
-
-
0033957466
-
Database resources of the National Center for Biotechnology Information
-
DL Wheeler C Chappey AE Lash et al. 2000 Database resources of the National Center for Biotechnology Information Nucleic Acids Res 28 1 10 14
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 10-14
-
-
Wheeler, D.L.1
Chappey, C.2
Lash, A.E.3
-
47
-
-
0023701441
-
Ribosomal DNA insertion elements R1Bm and R2Bm can transpose in a sequence specific manner to locations outside the 28 S genes
-
Y Xiong WD Burke JL Jakubczak TH Eickbush 1988 Ribosomal DNA insertion elements R1Bm and R2Bm can transpose in a sequence specific manner to locations outside the 28 S genes Nucleic Acids Res 16 22 10561 10573
-
(1988)
Nucleic Acids Res
, vol.16
, Issue.22
, pp. 10561-10573
-
-
Xiong, Y.1
Burke, W.D.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
48
-
-
33845230586
-
Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster
-
J Ye TH Eickbush 2006 Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster Mol Cell Biol 26 23 8781 8790
-
(2006)
Mol Cell Biol
, vol.26
, Issue.23
, pp. 8781-8790
-
-
Ye, J.1
Eickbush, T.H.2
-
49
-
-
0020397448
-
Cloning and characterization of the ribosomal RNA genes of Rhynchosciara americana
-
A Zaha O Leoncini CP Hollenberg FJ Lara 1982 Cloning and characterization of the ribosomal RNA genes of Rhynchosciara americana Chromosoma 87 1 103 116
-
(1982)
Chromosoma
, vol.87
, Issue.1
, pp. 103-116
-
-
Zaha, A.1
Leoncini, O.2
Hollenberg, C.P.3
Lara, F.J.4
-
50
-
-
20444410099
-
Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans
-
X Zhang TH Eickbush 2005 Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans Genetics 170 1 195 205
-
(2005)
Genetics
, vol.170
, Issue.1
, pp. 195-205
-
-
Zhang, X.1
Eickbush, T.H.2
-
51
-
-
38349165930
-
Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus
-
X Zhang J Zhou TH Eickbush 2008 Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus Mol Biol Evol 25 1 229 237
-
(2008)
Mol Biol Evol
, vol.25
, Issue.1
, pp. 229-237
-
-
Zhang, X.1
Zhou, J.2
Eickbush, T.H.3
|