메뉴 건너뛰기




Volumn 23, Issue 11, 2003, Pages 3825-3836

Transcription of endogenous and exogenous R2 elements in the rRNA gene locus of Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 0038246255     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.23.11.3825-3836.2003     Document Type: Article
Times cited : (27)

References (44)
  • 1
    • 0032510519 scopus 로고    scopus 로고
    • Are retrotransposons long term hitchhikers?
    • Burke, W. D., H. S. Malik, W. C. Lathe, and T. H. Eickbush. 1998. Are retrotransposons long term hitchhikers? Nature 239:141-142.
    • (1998) Nature , vol.239 , pp. 141-142
    • Burke, W.D.1    Malik, H.S.2    Lathe, W.C.3    Eickbush, T.H.4
  • 2
    • 0032955930 scopus 로고    scopus 로고
    • The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods
    • Burke, W. D., H. S. Malik, J. P. Jones, and T. H. Eickbush. 1999. The domain structure and retrotransposition mechanism of R2 elements are conserved throughout arthropods. Mol. Biol. Evol. 16:502-511.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 502-511
    • Burke, W.D.1    Malik, H.S.2    Jones, J.P.3    Eickbush, T.H.4
  • 3
    • 0028871801 scopus 로고
    • R4, a non-LTR retrotransposon specific to the large subunit rRNA gene of nematodes
    • Burke, W. D., F. Müller, and T. H. Eickbush. 1995. R4, a non-LTR retrotransposon specific to the large subunit rRNA gene of nematodes. Nucleic Acids Res. 23:4628-4634.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4628-4634
    • Burke, W.D.1    Müller, F.2    Eickbush, T.H.3
  • 4
    • 0018296609 scopus 로고
    • The occurrence of long transcription units among the X and Y ribosomal genes of Drosophila melanogaster: Transcription of insertion sequences
    • Chooi, W. Y. 1979. The occurrence of long transcription units among the X and Y ribosomal genes of Drosophila melanogaster: transcription of insertion sequences. Chromosoma 74:57-74.
    • (1979) Chromosoma , vol.74 , pp. 57-74
    • Chooi, W.Y.1
  • 5
    • 0025876003 scopus 로고
    • Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates
    • Clark, A. G., F. M. Szumski, and E. S. M. Lyckegaard. 1990. Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates. Genet. Res. 58:7-13.
    • (1990) Genet. Res. , vol.58 , pp. 7-13
    • Clark, A.G.1    Szumski, F.M.2    Lyckegaard, E.S.M.3
  • 6
    • 1542772591 scopus 로고
    • Correlations between developmental rates, enzyme activities, ribosomal DNA spacer-length phenotypes, and adaptation in Drosophila melanogaster
    • Cluster, P. D., D. Marinkovic, R. W. Allard, and F. J. Ayala. 1987. Correlations between developmental rates, enzyme activities, ribosomal DNA spacer-length phenotypes, and adaptation in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 84:610-614.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 610-614
    • Cluster, P.D.1    Marinkovic, D.2    Allard, R.W.3    Ayala, F.J.4
  • 7
    • 0026684670 scopus 로고
    • Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures
    • Conconi, A., J. M. Sogo, and C. A. Ryan. 1992. Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures. Proc. Natl. Acad. Sci. USA 89:5256-5260.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5256-5260
    • Conconi, A.1    Sogo, J.M.2    Ryan, C.A.3
  • 8
    • 0024392359 scopus 로고
    • Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle
    • Conconi, A., R. M. Widmer, T. Koller, and J. M. Sogo. 1989. Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle. Cell 57:753-761.
    • (1989) Cell , vol.57 , pp. 753-761
    • Conconi, A.1    Widmer, R.M.2    Koller, T.3    Sogo, J.M.4
  • 9
    • 0029112540 scopus 로고
    • Transcription in the yeast rRNA gene locus: Distribution of the active gene copies and chromatin structure of their flanking regulatory sequences
    • Dammann, R., R. Lucchini, T. Koller, and J. M. Sogo. 1995. Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences. Mol. Cell. Biol. 15:5294-5303.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5294-5303
    • Dammann, R.1    Lucchini, R.2    Koller, T.3    Sogo, J.M.4
  • 10
    • 0017379298 scopus 로고
    • Studies on the ribosomal RNA cistrons in interspecific Drosophila hybrids
    • Durica, D. S., and H. M. Krider. 1977. Studies on the ribosomal RNA cistrons in interspecific Drosophila hybrids. Dev. Biol. 59:62-74.
    • (1977) Dev. Biol. , vol.59 , pp. 62-74
    • Durica, D.S.1    Krider, H.M.2
  • 11
    • 0028870386 scopus 로고
    • Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup
    • Eickbush, D. G., and T. H. Eickbush. 1995. Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup. Genetics 139:671-684.
    • (1995) Genetics , vol.139 , pp. 671-684
    • Eickbush, D.G.1    Eickbush, T.H.2
  • 12
    • 0033986777 scopus 로고    scopus 로고
    • Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster
    • Eickbush, D. G., D. D. Luan, and T. H. Eickbush. 2000. Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster. Mol. Cell. Biol. 20:213-223.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 213-223
    • Eickbush, D.G.1    Luan, D.D.2    Eickbush, T.H.3
  • 13
    • 0003364846 scopus 로고    scopus 로고
    • R2 and related site-specific non-long terminal repeat retrotransposons
    • N. L. Craig, R. Craigie, M. Gellart, and A. M. Lambowitz (ed.), Mobile DNA II, Washington, D.C.
    • Eickbush, T. H. 2002. R2 and related site-specific non-long terminal repeat retrotransposons, p. 813-835. In N. L. Craig, R. Craigie, M. Gellart, and A. M. Lambowitz (ed.), Mobile DNA II. American Society for Microbiology, Washington, D.C.
    • (2002) American Society for Microbiology , pp. 813-835
    • Eickbush, T.H.1
  • 14
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng, Q., J. V. Moran, H. H. Kazazian, and J. D. Boeke. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian, H.H.3    Boeke, J.D.4
  • 15
    • 0019209512 scopus 로고
    • Unequal crossing over at the rDNA tandon as a source of quantitative genetic variation in Drosophila
    • Frankham, R., D. A. Briscoe, and R. K. Nurthen. 1980. Unequal crossing over at the rDNA tandon as a source of quantitative genetic variation in Drosophila. Genetics 95:727-742.
    • (1980) Genetics , vol.95 , pp. 727-742
    • Frankham, R.1    Briscoe, D.A.2    Nurthen, R.K.3
  • 16
    • 0035141595 scopus 로고    scopus 로고
    • Multiple lineages of R1 retrotransposable elements can coexist in the rDNA loci of Drosophila
    • Gentile, K. L., W. D. Burke, and T. H. Eickbush. 2001. Multiple lineages of R1 retrotransposable elements can coexist in the rDNA loci of Drosophila. Mol. Biol. Evol. 18:235-245.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 235-245
    • Gentile, K.L.1    Burke, W.D.2    Eickbush, T.H.3
  • 17
    • 0029670588 scopus 로고    scopus 로고
    • Analysis of the 5′ junctions of R2 insertions with the 28S gene: Implications for non-LTR retrotransposition
    • George, J. A., W. D. Burke, and T. H. Eickbush. 1996. Analysis of the 5′ junctions of R2 insertions with the 28S gene: implications for non-LTR retrotransposition. Genetics 142:853-863.
    • (1996) Genetics , vol.142 , pp. 853-863
    • George, J.A.1    Burke, W.D.2    Eickbush, T.H.3
  • 18
    • 0025269132 scopus 로고
    • Type I (R1) and type II (R2) ribosomal DNA insertions of Drosophila melanogaster are retrotransposable elements closely related to those of Bombyx mori
    • Jakubczak, J. L., Y. Xiong, and T. H. Eickbush. 1990. Type I (R1) and type II (R2) ribosomal DNA insertions of Drosophila melanogaster are retrotransposable elements closely related to those of Bombyx mori. J. Mol. Biol. 212:37-52.
    • (1990) J. Mol. Biol. , vol.212 , pp. 37-52
    • Jakubczak, J.L.1    Xiong, Y.2    Eickbush, T.H.3
  • 19
    • 0026729098 scopus 로고
    • Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster
    • Jakubczak, J. L., M. K. Zenni, R. C. Woodruff, and T. H. Eickbush. 1992. Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster. Genetics 131:129-142.
    • (1992) Genetics , vol.131 , pp. 129-142
    • Jakubczak, J.L.1    Zenni, M.K.2    Woodruff, R.C.3    Eickbush, T.H.4
  • 20
    • 0021459207 scopus 로고
    • The rare transcripts of interrupted rRNA genes in Drosophila melanogaster are processed or degraded during synthesis
    • Jamrich, M., and O. L. Miller, Jr. 1984. The rare transcripts of interrupted rRNA genes in Drosophila melanogaster are processed or degraded during synthesis. EMBO J. 3:1541-1545.
    • (1984) EMBO J. , vol.3 , pp. 1541-1545
    • Jamrich, M.1    Miller O.L., Jr.2
  • 21
    • 0018842097 scopus 로고
    • Nuclear RNA transcripts from Drosophila melanogaster ribosomal RNA genes containing introns
    • Jolly, D. J., and C. A. Thomas. 1980. Nuclear RNA transcripts from Drosophila melanogaster ribosomal RNA genes containing introns. Nucleic Acids Res. 8:67-84.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 67-84
    • Jolly, D.J.1    Thomas, C.A.2
  • 22
    • 0024458860 scopus 로고
    • Isolation and characterization of ribosomal DNA variants from Sciara coprophila
    • Kerrebrock, A. W., R. Srivastava, and S. A. Gerbi. 1989. Isolation and characterization of ribosomal DNA variants from Sciara coprophila. J. Mol. Biol. 210:1-13.
    • (1989) J. Mol. Biol. , vol.210 , pp. 1-13
    • Kerrebrock, A.W.1    Srivastava, R.2    Gerbi, S.A.3
  • 23
    • 0019873657 scopus 로고
    • Drosophila melanogaster ribosomal DNA containing type II insertions is variably transcribed in different strains and tissues
    • Kidd, S. J., and D. M. Glover. 1981. Drosophila melanogaster ribosomal DNA containing type II insertions is variably transcribed in different strains and tissues. J. Mol. Biol. 151:645-662.
    • (1981) J. Mol. Biol. , vol.151 , pp. 645-662
    • Kidd, S.J.1    Glover, D.M.2
  • 24
    • 0030782396 scopus 로고    scopus 로고
    • A single lineage of R2 retrotransposable elements is an active, evolutionarily stable component of the Drosophila rDNA locus
    • Lathe, W. C., III, and T. H. Eickbush. 1997. A single lineage of R2 retrotransposable elements is an active, evolutionarily stable component of the Drosophila rDNA locus. Mol. Biol. Evol. 14:1232-1241.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1232-1241
    • Lathe W.C. III1    Eickbush, T.H.2
  • 25
    • 0019760631 scopus 로고
    • Expression of the ribosomal DNA insertions in bobbed mutants of Drosophila melanogaster
    • Long, E. O., M. Collins, B. I. Kiefer, and I. B. Dawid. 1981. Expression of the ribosomal DNA insertions in bobbed mutants of Drosophila melanogaster. Mol. Gen. Genet. 182:377-384.
    • (1981) Mol. Gen. Genet. , vol.182 , pp. 377-384
    • Long, E.O.1    Collins, M.2    Kiefer, B.I.3    Dawid, I.B.4
  • 26
    • 0018572716 scopus 로고
    • Expression of ribosomal DNA insertions in Drosophila melanogaster
    • Long, E. O., and I. B. Dawid. 1979. Expression of ribosomal DNA insertions in Drosophila melanogaster. Cell 18:1185-1196.
    • (1979) Cell , vol.18 , pp. 1185-1196
    • Long, E.O.1    Dawid, I.B.2
  • 27
    • 0019844135 scopus 로고
    • Structure and expression of ribosomal RNA genes of Drosophila melanogaster interrupted by type 2 insertions
    • Long, E. O., M. L. Rebbert, and I. B. Dawid. 1980. Structure and expression of ribosomal RNA genes of Drosophila melanogaster interrupted by type 2 insertions. Cold Spring Harbor Symp. Quant. Biol. 45:667-672.
    • (1980) Cold Spring Harbor Symp. Quant. Biol. , vol.45 , pp. 667-672
    • Long, E.O.1    Rebbert, M.L.2    Dawid, I.B.3
  • 28
    • 0029058441 scopus 로고
    • RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
    • Luan, D. D., and T. H. Eickbush. 1995. RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15:3882-3891.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 3882-3891
    • Luan, D.D.1    Eickbush, T.H.2
  • 29
    • 0029741802 scopus 로고    scopus 로고
    • Downstream 28S gene sequences on the RNA template affect the choice of primer and the accuracy of initiation by the R2 reverse transcriptase
    • Luan, D. D., and T. H. Eickbush. 1996. Downstream 28S gene sequences on the RNA template affect the choice of primer and the accuracy of initiation by the R2 reverse transcriptase. Mol. Cell. Biol. 16:4726-4734.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4726-4734
    • Luan, D.D.1    Eickbush, T.H.2
  • 30
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan, D. D., M. H. Korman, J. L. Jakubczak, and T. H. Eickbush. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 31
    • 0024746855 scopus 로고
    • The occurrence of long ribosomal transcripts homologous to type I insertions in bobbed mutants of Drosophila melanogaster
    • Makni, M., M. Marrakchi, and N. Prud'homme. 1989. The occurrence of long ribosomal transcripts homologous to type I insertions in bobbed mutants of Drosophila melanogaster. Genet. Res. 54:127-135.
    • (1989) Genet. Res. , vol.54 , pp. 127-135
    • Makni, M.1    Marrakchi, M.2    Prud'homme, N.3
  • 32
    • 0017154513 scopus 로고
    • Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster
    • McKnight, S. L., and O. L. Miller, Jr. 1976. Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster. Cell 8:305-319.
    • (1976) Cell , vol.8 , pp. 305-319
    • McKnight, S.L.1    Miller O.L., Jr.2
  • 33
    • 0016249442 scopus 로고
    • The nucleolus in primary spermatocytes of Drosophila hydei
    • Meyer, G. F., and W. Henning. 1974. The nucleolus in primary spermatocytes of Drosophila hydei. Chromosoma 46:121-144.
    • (1974) Chromosoma , vol.46 , pp. 121-144
    • Meyer, G.F.1    Henning, W.2
  • 34
    • 1842869298 scopus 로고    scopus 로고
    • Pokey, a new DNA transposon in Daphnia (Cladocera: Crustacea)
    • Penton, E. H., B. W. Sullender, and T. J. Crease. 2002. Pokey, a new DNA transposon in Daphnia (Cladocera: Crustacea). J. Mol. Evol. 55:664-673.
    • (2002) J. Mol. Evol. , vol.55 , pp. 664-673
    • Penton, E.H.1    Sullender, B.W.2    Crease, T.J.3
  • 35
    • 0034856981 scopus 로고    scopus 로고
    • Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans
    • Perez-Gonzalez, C. E., and T. H. Eickbush. 2001. Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans. Genetics 158:1557-1567.
    • (2001) Genetics , vol.158 , pp. 1557-1567
    • Perez-Gonzalez, C.E.1    Eickbush, T.H.2
  • 36
    • 0036811729 scopus 로고    scopus 로고
    • Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster
    • Perez-Gonzalez, C. E., and T. H. Eickbush. 2002. Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster. Genetics 162:799-811.
    • (2002) Genetics , vol.162 , pp. 799-811
    • Perez-Gonzalez, C.E.1    Eickbush, T.H.2
  • 37
    • 0031831237 scopus 로고    scopus 로고
    • Multigene family of ribosomal DNA in Drosophila melanogaster reveals contrasting patterns of homogenization for IGS and ITS spacer regions: A possible mechanism to resolve this paradox
    • Polanco, C., A. I. González, Á. de la Fuente, and G. A. Dover. 1998. Multigene family of ribosomal DNA in Drosophila melanogaster reveals contrasting patterns of homogenization for IGS and ITS spacer regions: a possible mechanism to resolve this paradox. Genetics 149:243-256.
    • (1998) Genetics , vol.149 , pp. 243-256
    • Polanco, C.1    González, A.I.2    De la Fuente, Á.3    Dover, G.A.4
  • 38
    • 0030988086 scopus 로고    scopus 로고
    • The repeat organizer, a specialized insulator element within the intergenic spacer of the Xenopus rRNA genes
    • Robinett, C. C., A. O'Connor, and M. Dunaway. 1997. The repeat organizer, a specialized insulator element within the intergenic spacer of the Xenopus rRNA genes. Mol. Cell. Biol. 17:2866-2875.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2866-2875
    • Robinett, C.C.1    O'Connor, A.2    Dunaway, M.3
  • 39
    • 0030786453 scopus 로고    scopus 로고
    • Chromatin structure and methylation of rat rRNA genes studied by formaldehyde fixation and psoralen cross-linking
    • Stancheva, L, R. Lucchini, T. Koller, and J. M. Sogo. 1997. Chromatin structure and methylation of rat rRNA genes studied by formaldehyde fixation and psoralen cross-linking. Nucleic Acids Res. 25:1727-1735.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1727-1735
    • Stancheva, L.1    Lucchini, R.2    Koller, T.3    Sogo, J.M.4
  • 40
    • 0022884294 scopus 로고
    • Transcription of rDNA insertions in bobbed mutants of Drosophila melanogaster
    • Terracol, R. 1986. Transcription of rDNA insertions in bobbed mutants of Drosophila melanogaster. Genet. Res. 48:167-174.
    • (1986) Genet. Res. , vol.48 , pp. 167-174
    • Terracol, R.1
  • 41
    • 0022432071 scopus 로고
    • Preferential DNase I sensitivity of insert-free ribosomal RNA of Drosophila melanogaster
    • Wayne, R. L., Z. D. Sharp, and J. D. Procunier. 1985. Preferential DNase I sensitivity of insert-free ribosomal RNA of Drosophila melanogaster. Nucleic Acids Res. 13:2869-2879.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 2869-2879
    • Wayne, R.L.1    Sharp, Z.D.2    Procunier, J.D.3
  • 42
    • 0023178676 scopus 로고
    • Evolution of the ribosomal DNA spacers of Drosophila melanogaster: Different patterns of variation on the X and Y chromosomes
    • Williams, S. M., G. R. Furnier, E. Fuog, and C. Strobeck. 1987. Evolution of the ribosomal DNA spacers of Drosophila melanogaster: different patterns of variation on the X and Y chromosomes. Genetics 116:225-232.
    • (1987) Genetics , vol.116 , pp. 225-232
    • Williams, S.M.1    Furnier, G.R.2    Fuog, E.3    Strobeck, C.4
  • 43
    • 0033529244 scopus 로고    scopus 로고
    • Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
    • Yang, J., H. S. Malik, and T. H. Eickbush. 1999. Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl. Acad. Sci. USA 96:7847-7852.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 7847-7852
    • Yang, J.1    Malik, H.S.2    Eickbush, T.H.3
  • 44
    • 0024396745 scopus 로고
    • Structure and tissuespecific developmental expression of a sea urchin arylsulfatase gene
    • Yang, Q., L. M. Angerer, and R. C. Angerer. 1989. Structure and tissuespecific developmental expression of a sea urchin arylsulfatase gene. Dev. Biol. 135:53-65.
    • (1989) Dev. Biol. , vol.135 , pp. 53-65
    • Yang, Q.1    Angerer, L.M.2    Angerer, R.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.