A novel physarum polycephalum SR protein kinase specifically phosphorylates the RS domain of the human SR protein, ASF/SF2

Acta Biochimica et Biophysica Sinica

Volumn 41, Issue 8, 2009, Pages 657-667

  Liu, Shide ^a   Kang, Kang ^a   Zhang, Jianhua ^a   Ouyang, Qiuling ^a   Zhou, Zhuolong ^a   Tian, Shengli ^a   Xing, Miao ^a  

^a SHENZHEN UNIVERSITY   (China)

Author keywords

Phosphorylation; Physarum polycephalum; SRPK

Indexed keywords

COMPLEMENTARY DNA; NUCLEAR PROTEIN; PROTEIN SERINE THREONINE KINASE; SFRS1 PROTEIN, HUMAN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; HELA CELL; HUMAN; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHOSPHORYLATION; PHYSARUM POLYCEPHALUM; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CONSERVED SEQUENCE; DNA, COMPLEMENTARY; HELA CELLS; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PHOSPHORYLATION; PHYSARUM POLYCEPHALUM; PROTEIN STRUCTURE, TERTIARY; PROTEIN-SERINE-THREONINE KINASES; SUBSTRATE SPECIFICITY;

ESCHERICHIA COLI; PHYSARUM; PHYSARUM POLYCEPHALUM;

EID: 68949125079     PISSN: 16729145     EISSN: 17457270     Source Type: Journal    
DOI: 10.1093/abbs/gmp054     Document Type: Article

References (30)

1. Gui JF, Lane WS and Fu XD. A serine kinase regulates intracellular localization of splicing factors in the cell cycle. Nature 1994, 369: 678-682.
2. Wang HY, Lin W, Dyck JA, Yeakley JM, Songyang Z, Cantley LC and Fu XD. SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells. J Cell Biol 1998, 140: 737-750.
3. Nikolakaki E, Kohen R, Hartmann AM, Stamm S, Georgatsou E and Giannakouros T. Cloning and characterization of an alternatively spliced form of SR protein kinase 1 that interacts specifically with scaffold attachment factor-B. J Biol Chem 2001, 276: 40175-40182.
4. Kuroyanagi N, Onogi H, Wakabayashi T and Hagiwara M. Novel SR-protein-specific kinase, SRPK2, disassembles nuclear speckles. Biochem Biophys Res Commun 1998, 242: 357-364.
5. Nakagawa O, Arnold M, Nakagawa M, Hamada H, Shelton JM, Kusano H and Harris TM, et al. Centronuclear myopathy in mice lacking a novel muscle-specific protein kinase transcriptionally regulated by MEF2. Genes Dev 2005, 19: 2066-2077.
6. Tang Z, Kuo T, Shen J and Lin RJ. Biochemical and genetic conservation of fission yeast Dsk1 and human SR protein-specific kinase 1. Mol Cell Biol 2000, 20: 816-824.
7. Siebel CW, Feng L, Guthrie C and Fu XD. Conservation in budding yeast of a kinase specific for SR splicing factors. Proc Natl Acad Sci USA 1999, 96: 5440-5445.
8. Kuroyanagi H, Kimura T, Wada K, Hisamoto N, Matsumoto K and Hagiwara M. SPK-1, a C. elegans SR protein kinase homologue, is essential for embryogenesis and required for germline development. Mech Dev 2000, 99: 51-64.
9. Portal D, Lobo GS, Kadener S, Prasad J, Espinosa JM, Pereira CA and Tang Z, et al. Trypanosoma cruzi TcSRPK, the first protozoan member of the SRPK family, is biochemically and functionally conserved with metazoan SR protein-specific kinases. Mol Biochem Parasitol 2003, 127: 9-21.
10. Ding JH, Zhong XY, Hagopian JC, Cruz MM, Ghosh G, Feramisco J and Adams JA, et al. Regulated cellular partitioning of SR proteinspecific kinases in mammalian cells. Mol Biol Cell 2006, 17: 876-885.
11. Nolen B, Yun CY, Wong CF, McCammon JA, Fu XD and Ghosh G. The structure of Sky1p reveals a novel mechanism for constitutive activity. Nat Struct Biol 2001, 8: 176-183.
12. Ngo JC, Gullingsrud J, Giang K, Yeh MJ, Fu XD, Adams JA and McCammon JA, et al. SR protein kinase 1 is resilient to inactivation. Structure 2007, 15: 123-133.
13. Lukasiewicz R, Velazquez-Dones A, Huynh N, Hagopian J, Fu XD, Adams J and Ghosh G. Structurally unique yeast and Mammalian serine-arginine protein kinases catalyze evolutionarily conserved phosphorylation reactions. J Biol Chem 2007, 282: 23036-23043.
14. Papoutsopoulou S, Nikolakaki E and Giannakouros T. SRPK1 and LBR protein kinases show identical substrate specificities. Biochem Biophys Res Commun 1999, 255: 602-607.
15. Papoutsopoulou S, Nikolakaki E, Chalepakis G, Kruft V, Chevaillier P and Giannakouros T. SR protein-specific kinase 1 is highly expressed in testis and phosphorylates protamine 1. Nucleic Acids Res 1999, 27: 2972-2980.
16. Daub H, Blencke S, Habenberger P, Kurtenbach A, Dennenmoser J, Wissing J and Ullrich A, et al. Identification of SRPK1 and SRPK2 as the major cellular protein kinases phosphorylating hepatitis B virus core protein. J Virol 2002, 76: 8124-8137.
17. Umehara H, Nishii Y, Morishima M, Kakehi Y, Kioka N, Amachi T and Koizumi J, et al. Effect of cisplatin treatment on speckled distribution of a serine/arginine-rich nuclear protein CROP/Luc7A. Biochem Biophys Res Commun 2003, 301: 324-329.
18. Mylonis I and Giannakouros T. Protein kinase CK2 phosphorylates and activates the SR protein-specific kinase 1. Biochem Biophys Res Commun 2003, 301: 650-656.
19. Kamachi M, Le TM, Kim SJ, Geiger ME, Anderson P and Utz PJ. Human autoimmune sera as molecular probes for the identification of an autoantigen kinase signaling pathway. J Exp Med 2002, 196: 1213-1225.
20. Rusch HP, Sachsenmaier W, Behrens K and Gruter V. Synchronization of mitosis by the fusion of the plasmodia of Physarum polycephalum. J Cell Biol 1966, 31: 204-209.
21. Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM and Henikoff S. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly-related sequences. Nucleic Acids Res 1998, 26: 1628-1635.
22. Zhang JH, Liu SD and Xing M. Construction of a cDNA expression library of Physarum polycephalum at G2-phase. J Shenzhen Univ Sci Eng 2005, 22: 50-56.
23. Ye Z and Connor JR. cDNA cloning by amplification of circularized first strand cDNAs reveals non-IRE-regulated iron- responsive mRNAs. Biochem Biophys Res Commun 2000, 275: 223-227.
24. Yue BG and Ajuh P. Functional co-expression of serine protein kinase SRPK1 and its substrate ASF/SF2 in Escherichia coli. Nucleic Acids Res 2000, 28: E14.
25. Hanks SK and Hunter T. Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995, 9: 576-596.
26. Schwede T, Kopp J, Guex N and Peitsch MC. SWISS-MODEL: an automated protein homology- modeling server. Nucleic Acids Res 2003, 31: 3381-3385.
27. Arnold K, Bordoli L, Kopp J and Schwede T. The SWISS-MODEL Workspace: a web-based environment for protein structure homology modeling. Bioinformatics 2006, 22: 195-201.
28. Guex N and Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18: 2714-2723.
29. Ma CT, Velazquez-Dones A, Hagopian JC, Ghosh G, Fu XD and Adams JA. Ordered multi-site phosphorylation of the splicing factor ASF/SF2 by SRPK1. J Mol Biol 2008, 376: 55-68.
30. Aubol BE, Chakrabarti S, Ngo J, Shaffer J, Nolen B, Fu XD and Ghosh G, et al. Processive phosphorylation of alternative splicing factor/splicing factor 2. Proc Natl Acad Sci USA 2003, 100: 12601-12606.