Prediction of membrane protein types and subcellular locations

Proteins: Structure, Function and Genetics

Volumn 34, Issue 1, 1999, Pages 137-153

  Chou, Kuo Chen ^a   Elrod, David W ^a  

^a Pharmacia and Upjohn ^*  (United States)

Author keywords

Amino acid composition; Anchored membrane; Bioinformatics; Component coupled effect; Organelles; Transmembrane

Indexed keywords

MEMBRANE PROTEIN;

AMINO ACID COMPOSITION; ARTICLE; CELL MEMBRANE; CELL ULTRASTRUCTURE; DRUG DESIGN; LIPID BILAYER; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN LOCALIZATION;

ALGORITHMS; CHLOROPLASTS; DRUG DESIGN; MEMBRANE PROTEINS; MITOCHONDRIA; MODELS, BIOLOGICAL; MODELS, STATISTICAL;

EID: 0032910566     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19990101)34:1<137::AID-PROT11>3.0.CO;2-O     Document Type: Article

References (17)

1. Rost B, Casadio R, Fariselli P, Sander C. Transmembrane helices predicted at 95% accuracy. Protein Sci 1995;4:521-533.
2. Resh MD. Myristylation and palmitylation of Src family members: the fats of the matter. Cell 1994;76:411-413.
3. Casey PJ. Protein lipidation in cell signalling. Science 1995;268: 221-225.
4. Bairoch A, Apweiler R. "The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res 1997;25:31-36.
5. Alberts B, Bray D, Lewis J, Raff M, Roberts K, Watson JD. In: Molecular biology of the cell. 3rd ed. New York: Garland Publishing. 1994.
6. Lodish H, Baltimore D, Berk A, Zipursky SL, Matsudaira P, Darnell J. (1995) in Molecular Cell Biology, 3rd ed., New York: Scientific American Books.
7. Chou KC. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins Structure Function Genet 1995;21:319-344.
8. Chou KC, Zhang CT. "Prediction of Protein Structural Classes." Crit Rev Biochem Mol Biol 1995;30:275-349.
9. Johnson RA, Wichem DW. Applied multivariate statistical analysis. 3rd ed., Prentice-Hall, Englewood Cliffs, New Jersey.
10. Mahalanobis PC. On the generalized distance in statistics. Proc Natl Inst Sci India 1936;2:49-55.
11. 2. Encyclopedia of Statistical Sciences, ed. Kotz, S. Johnson, NL., Vol. 5, pp. 176-181, John Wiley & Sons, New York.
12. Chou KC, Liu W, Maggiora GM, Zhang CT. Prediction and classification of domain structure classes. Protein Structure Function Genet 1998;31:97-103.
13. Mardia KV, Kent JT, Bibby JM. Multivariate analysis, p. 322 and p. 381, Academic Press, London, 1979.
14. Chou PY. Amino acid composition of four classes of proteins. In: Abstracts of Papers, Part I, Second Chemical Congress of the North American Continent, Las Vegas. 1980.
15. Chou PY. Prediction of protein structural classes from amino acid composition, in Prediction of protein structure and the principles of protein conformation. Fasman, G. D., p 549-586. New York: Plenum Press. 1989.
16. Nakashima H, Nishikawa K, Ooi T. The folding type of a protein is relevant to the amino acid composition. J Biochem 1986;99:152-162.
17. Chou KC, Elrod DW. Protein subcellular location prediction. Protein Engineering, 1999, in press.