-
1
-
-
26844548023
-
Structure of dimeric ATP synthase from mitochondria: An angular association of monomers induces the strong curvature of the inner membrane
-
Dudkina, N. V., J. Heinemeyer, W. Keegstra, E. J. Boekema, and H.-P. Braun. 2005. Structure of dimeric ATP synthase from mitochondria: an angular association of monomers induces the strong curvature of the inner membrane. FEBS Lett. 579:5769-5772.
-
(2005)
FEBS Lett
, vol.579
, pp. 5769-5772
-
-
Dudkina, N.V.1
Heinemeyer, J.2
Keegstra, W.3
Boekema, E.J.4
Braun, H.-P.5
-
2
-
-
28444476999
-
Membrane curvature and mechanisms of dynamic cell membrane remodeling
-
McMahon, H. T., and J. L. Gallop. 2005. Membrane curvature and mechanisms of dynamic cell membrane remodeling. Nature. 438:590-596.
-
(2005)
Nature
, vol.438
, pp. 590-596
-
-
McMahon, H.T.1
Gallop, J.L.2
-
3
-
-
33644846421
-
How proteins produce cellular membrane curvature
-
Zimmerberg, J., and M. M. Kozlov. 2006. How proteins produce cellular membrane curvature. Nat. Rev. Mol. Cell Biol. 7:9-19.
-
(2006)
Nat. Rev. Mol. Cell Biol
, vol.7
, pp. 9-19
-
-
Zimmerberg, J.1
Kozlov, M.M.2
-
4
-
-
32044448477
-
How the ER stays in shape
-
Collins, R. N. 2006. How the ER stays in shape. Cell. 124:464-466.
-
(2006)
Cell
, vol.124
, pp. 464-466
-
-
Collins, R.N.1
-
5
-
-
41949123425
-
Dimer ribbons of ATP synthase shape the inner mitochondrial membrane
-
Strauss, M., G. Hofhaus, R. R. Schröder, and W. Kühlbrandt. 2008. Dimer ribbons of ATP synthase shape the inner mitochondrial membrane. EMBO J. 27:1154-1160.
-
(2008)
EMBO J
, vol.27
, pp. 1154-1160
-
-
Strauss, M.1
Hofhaus, G.2
Schröder, R.R.3
Kühlbrandt, W.4
-
6
-
-
55549109763
-
Intrinsic curvature properties of photosynthetic proteins in chromatophores
-
Chandler, D., J. Hsin, C. B. Harrison, J. Gumbart, and K. Schulten. 2008. Intrinsic curvature properties of photosynthetic proteins in chromatophores. Biophys. J. 95:2822-2836.
-
(2008)
Biophys. J
, vol.95
, pp. 2822-2836
-
-
Chandler, D.1
Hsin, J.2
Harrison, C.B.3
Gumbart, J.4
Schulten, K.5
-
7
-
-
0942287196
-
Structural role of PufX in the dimerization of the photosynthetic core complex of Rhodobacter sphaeroides
-
Scheuring, S., F. Francia, J. Busselez, B. A. Melandris, J.-L. Rigaud, et al. 2004. Structural role of PufX in the dimerization of the photosynthetic core complex of Rhodobacter sphaeroides. J. Biol. Chem. 279:3620-3626.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 3620-3626
-
-
Scheuring, S.1
Francia, F.2
Busselez, J.3
Melandris, B.A.4
Rigaud, J.-L.5
-
8
-
-
1842510034
-
Molecular architecture of photosynthetic membranes in Rhodobacter sphaeroides: The role of PufX
-
Siebert, C. A., P. Qian, D. Fotiadis, A. Engel, C. N. Hunter, et al. 2004. Molecular architecture of photosynthetic membranes in Rhodobacter sphaeroides: the role of PufX. EMBO J. 23:690-700.
-
(2004)
EMBO J
, vol.23
, pp. 690-700
-
-
Siebert, C.A.1
Qian, P.2
Fotiadis, D.3
Engel, A.4
Hunter, C.N.5
-
9
-
-
12544254339
-
Structure of the dimeric PufX-containing core complex of Rhodobacter blasticus by in situ atomic force microscopy
-
Scheuring, S., J. Busselez, and D. Lévy. 2005. Structure of the dimeric PufX-containing core complex of Rhodobacter blasticus by in situ atomic force microscopy. J. Biol. Chem. 280:1426-1431.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 1426-1431
-
-
Scheuring, S.1
Busselez, J.2
Lévy, D.3
-
10
-
-
20344374627
-
The 8.5 Å projection structure of the core RC-LH1-PufX dimer of Rhodobacter sphaeroides
-
Qian, P., C. N. Hunter, and P. A. Bullough. 2005. The 8.5 Å projection structure of the core RC-LH1-PufX dimer of Rhodobacter sphaeroides. J. Mol. Biol. 349:948-960.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 948-960
-
-
Qian, P.1
Hunter, C.N.2
Bullough, P.A.3
-
11
-
-
33845698300
-
The architecture and function of the light-harvesting apparatus of purple bacteria: From single molecules to in vivo membranes
-
Cogdell, R. J., A. Gall, and J. Köhler. 2006. The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes. Q. Rev. Biophys. 39:227-324.
-
(2006)
Q. Rev. Biophys
, vol.39
, pp. 227-324
-
-
Cogdell, R.J.1
Gall, A.2
Köhler, J.3
-
12
-
-
33748578027
-
AFM studies of the supramolecular assembly of bacterial photosynthetic core-complexes
-
Scheuring, S. 2006. AFM studies of the supramolecular assembly of bacterial photosynthetic core-complexes. Curr. Opin. Struct. Biol. 10:1-7.
-
(2006)
Curr. Opin. Struct. Biol
, vol.10
, pp. 1-7
-
-
Scheuring, S.1
-
13
-
-
36749102634
-
Structural basis for the PufX-mediated dimerization of bacterial photosynthetic core complexes
-
Busselez, J., M. Cottevielle, P. Cuniasse, F. Gubellini, N. Boisset, et al. 2007. Structural basis for the PufX-mediated dimerization of bacterial photosynthetic core complexes. Structure. 15:1674-1683.
-
(2007)
Structure
, vol.15
, pp. 1674-1683
-
-
Busselez, J.1
Cottevielle, M.2
Cuniasse, P.3
Gubellini, F.4
Boisset, N.5
-
14
-
-
46349084478
-
Structure, function and interactions of the PufX protein
-
Holden-Dye, K., L. I. Crouch, and M. R. Jones. 2008. Structure, function and interactions of the PufX protein. Biochim. Biophys. Acta. 1777:613-630.
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 613-630
-
-
Holden-Dye, K.1
Crouch, L.I.2
Jones, M.R.3
-
15
-
-
46649110611
-
Three-dimensional reconstruction of a membrane-bending complex: The RC-LH1-PufX core dimer of Rhodobacter sphaeroides
-
Qian, P., P. A. Bullough, and C. N. Hunter. 2008. Three-dimensional reconstruction of a membrane-bending complex: the RC-LH1-PufX core dimer of Rhodobacter sphaeroides. J. Biol. Chem. 283:14002-14011.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 14002-14011
-
-
Qian, P.1
Bullough, P.A.2
Hunter, C.N.3
-
16
-
-
0023972876
-
Physiological and structural analysis of light-harvesting mutants of Rhodobacter sphaeroides
-
Kiley, P. J., A. Varga, and S. Kaplan. 1988. Physiological and structural analysis of light-harvesting mutants of Rhodobacter sphaeroides. J. Bacteriol. 170:1103-1115.
-
(1988)
J. Bacteriol
, vol.170
, pp. 1103-1115
-
-
Kiley, P.J.1
Varga, A.2
Kaplan, S.3
-
17
-
-
0001753915
-
Oligomerization states and associations of light-harvesting pigment protein complexes of Rhodobacter sphaeroides as analyzed by lithium dodecyl sulfate-polyacrylamide gel electrophoresis
-
Hunter, C. N., J. D. Pennoyer, J. N. Sturgis, D. Farrelly, and R. A. Niederman. 1988. Oligomerization states and associations of light-harvesting pigment protein complexes of Rhodobacter sphaeroides as analyzed by lithium dodecyl sulfate-polyacrylamide gel electrophoresis. Biochemistry. 27:3459-3467.
-
(1988)
Biochemistry
, vol.27
, pp. 3459-3467
-
-
Hunter, C.N.1
Pennoyer, J.D.2
Sturgis, J.N.3
Farrelly, D.4
Niederman, R.A.5
-
18
-
-
0033081638
-
Supramolecular organization of the photosynthetic apparatus of Rhodobacter sphaeroides
-
Jungas, C., J. Ranck, J. Rigaud, P. Joliot, and A. Verméglio. 1999. Supramolecular organization of the photosynthetic apparatus of Rhodobacter sphaeroides. EMBO J. 18:534-542.
-
(1999)
EMBO J
, vol.18
, pp. 534-542
-
-
Jungas, C.1
Ranck, J.2
Rigaud, J.3
Joliot, P.4
Verméglio, A.5
-
19
-
-
0037047004
-
Isolation, size estimates, and spectral heterogeneity of an oligomeric series of light-harvesting 1 complexes from Rhodobacter sphaeroides
-
Westerhuis, W. H. J., J. N. Sturgis, E. C. Ratcliffe, C. N. Hunter, and R. A. Niederman. 2002. Isolation, size estimates, and spectral heterogeneity of an oligomeric series of light-harvesting 1 complexes from Rhodobacter sphaeroides. Biochemistry. 41:8698-8707.
-
(2002)
Biochemistry
, vol.41
, pp. 8698-8707
-
-
Westerhuis, W.H.J.1
Sturgis, J.N.2
Ratcliffe, E.C.3
Hunter, C.N.4
Niederman, R.A.5
-
20
-
-
0015514754
-
Membranes of photosynthetic bacteria
-
Oelze, J., and G. Drews. 1972. Membranes of photosynthetic bacteria. Biochim. Biophys. Acta. 265:209-239.
-
(1972)
Biochim. Biophys. Acta
, vol.265
, pp. 209-239
-
-
Oelze, J.1
Drews, G.2
-
21
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco, L. G., E. Villa, K. Mitra, J. Frank, and K. Schulten. 2008. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure. 16:673-683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
22
-
-
59049096394
-
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
-
Villa, E., J. Sengupta, L. G. Trabuco, J. LeBarron, W. T. Baxter, et al. 2009. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proc. Natl. Acad. Sci. USA. 106:1063-1068.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1063-1068
-
-
Villa, E.1
Sengupta, J.2
Trabuco, L.G.3
LeBarron, J.4
Baxter, W.T.5
-
23
-
-
59649084842
-
Structural model and excitonic properties of the dimeric RC-LH1-PufX complex from Rhodobacter sphaeroides
-
Şxener, M. K., J. Hsin, L. G. Trabuco, E. Villa, P. Qian, et al. 2009. Structural model and excitonic properties of the dimeric RC-LH1-PufX complex from Rhodobacter sphaeroides. Chem. Phys. 357:188-197.
-
(2009)
Chem. Phys
, vol.357
, pp. 188-197
-
-
Şxener, M.K.1
Hsin, J.2
Trabuco, L.G.3
Villa, E.4
Qian, P.5
-
24
-
-
0034696751
-
The solution structure of the Rhodobacter sphaeroides LH1 β reveals two helical domains separated by a more flexible region: Structural consequences for the LH1 complex
-
Conroy, M. J., W. Westerhuis, P. S. Parkes-Loach, P. A. Loach, C. N. Hunter, et al. 2000. The solution structure of the Rhodobacter sphaeroides LH1 β reveals two helical domains separated by a more flexible region: structural consequences for the LH1 complex. J. Mol. Biol. 298:83-94.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 83-94
-
-
Conroy, M.J.1
Westerhuis, W.2
Parkes-Loach, P.S.3
Loach, P.A.4
Hunter, C.N.5
-
25
-
-
14644440750
-
Solution structures of the core light-harvesting α and β polypeptides from Rhodospirillum rubrum: Implications for the pigment-protein and proteinprotein interactions
-
Wang, Z. Y., K. Gokan, M. Kobayashi, and T. Nozawa. 2005. Solution structures of the core light-harvesting α and β polypeptides from Rhodospirillum rubrum: implications for the pigment-protein and proteinprotein interactions. J. Mol. Biol. 347:465-477.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 465-477
-
-
Wang, Z.Y.1
Gokan, K.2
Kobayashi, M.3
Nozawa, T.4
-
26
-
-
0030585121
-
The crystal structure of the light harvesting complex II (B800-850) from Rhodospirillum molischianum
-
Koepke, J., X. Hu, C. Muenke, K. Schulten, and H. Michel. 1996. The crystal structure of the light harvesting complex II (B800-850) from Rhodospirillum molischianum. Structure. 4:581-597.
-
(1996)
Structure
, vol.4
, pp. 581-597
-
-
Koepke, J.1
Hu, X.2
Muenke, C.3
Schulten, K.4
Michel, H.5
-
27
-
-
0028774335
-
Structure of the photosynthetic reaction center from Rhodobacter sphaeroides at 2.65 Å resolution: Cofactors and protein-cofactor interactions
-
Ermler, U., G. Fritzsch, S. K. Buchanan, and H. Michel. 1994. Structure of the photosynthetic reaction center from Rhodobacter sphaeroides at 2.65 Å resolution: cofactors and protein-cofactor interactions. Structure. 2:925-936.
-
(1994)
Structure
, vol.2
, pp. 925-936
-
-
Ermler, U.1
Fritzsch, G.2
Buchanan, S.K.3
Michel, H.4
-
28
-
-
33845433893
-
The solution structure of the PufX polypeptide from Rhodobacter sphaeroides
-
Tunnicliffe, R. B., E. C. Ratcliffe, C. N. Hunter, and M. P. Williamson. 2006. The solution structure of the PufX polypeptide from Rhodobacter sphaeroides. FEBS Lett. 580:6967-6971.
-
(2006)
FEBS Lett
, vol.580
, pp. 6967-6971
-
-
Tunnicliffe, R.B.1
Ratcliffe, E.C.2
Hunter, C.N.3
Williamson, M.P.4
-
29
-
-
53249125167
-
Four-scale description of membrane sculpting by BAR domains
-
Arkhipov, A., Y. Yin, and K. Schulten. 2008. Four-scale description of membrane sculpting by BAR domains. Biophys. J. 95:2806-2821.
-
(2008)
Biophys. J
, vol.95
, pp. 2806-2821
-
-
Arkhipov, A.1
Yin, Y.2
Schulten, K.3
-
30
-
-
0033136019
-
Investigating a back door mechanism of actin phosphate release by steered molecular dynamics
-
Wriggers, W., and K. Schulten. 1999. Investigating a back door mechanism of actin phosphate release by steered molecular dynamics. Proteins Struct. Funct. Gen. 35:262-273.
-
(1999)
Proteins Struct. Funct. Gen
, vol.35
, pp. 262-273
-
-
Wriggers, W.1
Schulten, K.2
-
31
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, et al. 2005. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26:1781-1802.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
-
32
-
-
34848830419
-
Exploring transmembrane transport through a-hemolysin with grid-steered molecular dynamics
-
Wells, D., V. Abramkina, and A. Aksimentiev. 2007. Exploring transmembrane transport through a-hemolysin with grid-steered molecular dynamics. J. Chem. Phys. 127:125101-125110.
-
(2007)
J. Chem. Phys
, vol.127
, pp. 125101-125110
-
-
Wells, D.1
Abramkina, V.2
Aksimentiev, A.3
-
33
-
-
0041784950
-
-
MacKerell, Jr., A., D. Bashford, M. Bellott, R. L. Dunbrack, Jr., J. Evanseck, et al. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616.
-
MacKerell, Jr., A., D. Bashford, M. Bellott, R. L. Dunbrack, Jr., J. Evanseck, et al. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616.
-
-
-
-
34
-
-
0348244547
-
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
-
Foloppe, N., and A. D. MacKerrell, Jr. 2000. All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem. 21:86-104.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 86-104
-
-
Foloppe, N.1
MacKerrell Jr., A.D.2
-
35
-
-
3142714765
-
-
MacKerell, Jr., A. D., M. Feig, and C. L. Brooks III. 2004. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem. 25:1400-1415.
-
MacKerell, Jr., A. D., M. Feig, and C. L. Brooks III. 2004. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem. 25:1400-1415.
-
-
-
-
36
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
37
-
-
85190235250
-
-
Schlick, T., R. Skeel, A. Brünger, L. Kalé, J. A. Board, Jr., et al. 1999. Algorithmic challenges in computational molecular biophysics. J. Comput. Phys. 151:9-48.
-
Schlick, T., R. Skeel, A. Brünger, L. Kalé, J. A. Board, Jr., et al. 1999. Algorithmic challenges in computational molecular biophysics. J. Comput. Phys. 151:9-48.
-
-
-
-
38
-
-
84963146276
-
-
Grubmüller, H., H. Heller, A. Windemuth, and K. Schulten. 1991. Generalized Verlet algorithm for efficient molecular dynamics simulations with long-range interactions. Mol. Simul. 6:121-142.
-
Grubmüller, H., H. Heller, A. Windemuth, and K. Schulten. 1991. Generalized Verlet algorithm for efficient molecular dynamics simulations with long-range interactions. Mol. Simul. 6:121-142.
-
-
-
-
39
-
-
48749137581
-
Stochastic boundary conditions for molecular dynamics simulations of ST2 water
-
Brünger, A. T., C. L. Brooks III, and M. Karplus. 1984. Stochastic boundary conditions for molecular dynamics simulations of ST2 water. Chem. Phys. Lett. 105:495-498.
-
(1984)
Chem. Phys. Lett
, vol.105
, pp. 495-498
-
-
Brünger, A.T.1
Brooks III, C.L.2
Karplus, M.3
-
40
-
-
0004251871
-
-
Elsevier Science, Amsterdam, The Netherlands
-
Hyde, S., S. Andersson, K. Larsson, Z. Blum, T. Landh, et al. 1997. The Language of Shape. Elsevier Science, Amsterdam, The Netherlands.
-
(1997)
The Language of Shape
-
-
Hyde, S.1
Andersson, S.2
Larsson, K.3
Blum, Z.4
Landh, T.5
-
41
-
-
0034624981
-
The long-range supraorganization of the bacterial photosynthetic unit: A key role for PufX
-
Frese, R., J. Olsen, R. Branvall, W. Westerhuis, C. Hunter, et al. 2000. The long-range supraorganization of the bacterial photosynthetic unit: a key role for PufX. Proc. Natl. Acad. Sci. USA. 97:5197-5202.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5197-5202
-
-
Frese, R.1
Olsen, J.2
Branvall, R.3
Westerhuis, W.4
Hunter, C.5
-
42
-
-
11144244090
-
The long-range organization of a native photosynthetic membrane
-
Frese, R. N., C. A. Siebert, R. A. Niederman, C. N. Hunter, C. Otto, et al. 2004. The long-range organization of a native photosynthetic membrane. Proc. Natl. Acad. Sci. USA. 101:17994-17999.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17994-17999
-
-
Frese, R.N.1
Siebert, C.A.2
Niederman, R.A.3
Hunter, C.N.4
Otto, C.5
-
43
-
-
38349033143
-
Protein shape and crowding drive domain formation and curvature in biological membranes
-
Frese, R. N., J. C. Pàmies, J. D. Olsen, S. Bahatyrova, C. D. van der Weij-de Wit, et al. 2008. Protein shape and crowding drive domain formation and curvature in biological membranes. Biophys. J. 94:640-647.
-
(2008)
Biophys. J
, vol.94
, pp. 640-647
-
-
Frese, R.N.1
Pàmies, J.C.2
Olsen, J.D.3
Bahatyrova, S.4
van der Weij-de Wit, C.D.5
-
44
-
-
16544379913
-
Voltage sensor meets lipid membrane
-
MacKinnon, R. 2004. Voltage sensor meets lipid membrane. Science. 306:1304-1305.
-
(2004)
Science
, vol.306
, pp. 1304-1305
-
-
MacKinnon, R.1
-
45
-
-
32044445021
-
A class of membrane proteins shaping the tubular endoplasmic reticulum
-
Voeltz, G. K., W. A. Prinz, Y. Shibata, J. M. Rist, and T. A. Rapoport. 2006. A class of membrane proteins shaping the tubular endoplasmic reticulum. Cell. 124:573-586.
-
(2006)
Cell
, vol.124
, pp. 573-586
-
-
Voeltz, G.K.1
Prinz, W.A.2
Shibata, Y.3
Rist, J.M.4
Rapoport, T.A.5
-
46
-
-
40049085592
-
Membrane proteins of the endoplasmic reticulum induce high-curvature tubules
-
Hu, J., Y. Shibata, C. Voss, T. Shemesh, Z. Li, et al. 2008. Membrane proteins of the endoplasmic reticulum induce high-curvature tubules. Science. 319:1247-1250.
-
(2008)
Science
, vol.319
, pp. 1247-1250
-
-
Hu, J.1
Shibata, Y.2
Voss, C.3
Shemesh, T.4
Li, Z.5
-
47
-
-
33750037303
-
Direct observation of Bin/amphiphysin/ Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations
-
Blood, P. D., and G. A. Voth. 2006. Direct observation of Bin/amphiphysin/ Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations. Proc. Natl. Acad. Sci. USA. 103:15068-15072.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15068-15072
-
-
Blood, P.D.1
Voth, G.A.2
-
48
-
-
34247895641
-
Membrane remodeling from N-BAR domain interactions: Insights from multi-scale simulation
-
Ayton, G. S., P. D. Blood, and G. A. Voth. 2007. Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation. Biophys. J. 92:3595-3602.
-
(2007)
Biophys. J
, vol.92
, pp. 3595-3602
-
-
Ayton, G.S.1
Blood, P.D.2
Voth, G.A.3
-
49
-
-
50349086997
-
Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations
-
Blood, P. D., R. D. Swenson, and G. A. Voth. 2008. Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations. Biophys. J. 95:1866-1876.
-
(2008)
Biophys. J
, vol.95
, pp. 1866-1876
-
-
Blood, P.D.1
Swenson, R.D.2
Voth, G.A.3
-
50
-
-
58149181485
-
Lipids on the moves: Simulations of membrane pores, domains, stalks and curves
-
Marrink, S. J., A. H. de Vries, and D. P. Tieleman. 2008. Lipids on the moves: simulations of membrane pores, domains, stalks and curves. Biochim. Biophys. Acta. 1788:149-168.
-
(2008)
Biochim. Biophys. Acta
, vol.1788
, pp. 149-168
-
-
Marrink, S.J.1
de Vries, A.H.2
Tieleman, D.P.3
-
51
-
-
85031348576
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
52
-
-
41449099769
-
Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations
-
Jolley, C. C., S. A. Wells, P. Fromme, and M. F. Thorpe. 2008. Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations. Biophys. J. 94:1613-1621.
-
(2008)
Biophys. J
, vol.94
, pp. 1613-1621
-
-
Jolley, C.C.1
Wells, S.A.2
Fromme, P.3
Thorpe, M.F.4
-
53
-
-
38949092920
-
Protein structure fitting and refinement guided by cryo-EM density
-
Topf, M., K. Lasker, B. Webb, H. Wolfson, W. Chiu, et al. 2008. Protein structure fitting and refinement guided by cryo-EM density. Structure. 16:295-307.
-
(2008)
Structure
, vol.16
, pp. 295-307
-
-
Topf, M.1
Lasker, K.2
Webb, B.3
Wolfson, H.4
Chiu, W.5
-
54
-
-
0001832403
-
Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function
-
Chapman, M. S. 1995. Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function. Acta Crystallogr. A. 51:69-80.
-
(1995)
Acta Crystallogr. A
, vol.51
, pp. 69-80
-
-
Chapman, M.S.1
-
55
-
-
0035783170
-
Real space refinement of acto-myosin structures from sectioned muscle
-
Chen, L. F., E. Blanc, M. S. Chapman, and K. A. Taylor. 2001. Real space refinement of acto-myosin structures from sectioned muscle. J. Struct. Biol. 133:221-232.
-
(2001)
J. Struct. Biol
, vol.133
, pp. 221-232
-
-
Chen, L.F.1
Blanc, E.2
Chapman, M.S.3
Taylor, K.A.4
-
56
-
-
0035783173
-
Using Situs for flexible and rigidbody fitting of multiresolution single-molecule data
-
Wriggers, W., and S. Birmanns. 2001. Using Situs for flexible and rigidbody fitting of multiresolution single-molecule data. J. Struct. Biol. 133:193-202.
-
(2001)
J. Struct. Biol
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
57
-
-
1642355235
-
Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis
-
Tama, F., O. Miyashita, and C. L. Brooks III. 2004. Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. J. Mol. Biol. 337:985-999.
-
(2004)
J. Mol. Biol
, vol.337
, pp. 985-999
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
58
-
-
33748351384
-
NORMA: A tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps
-
Suhre, K., J. Navaza, and Y. H. Sanejouand. 2006. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps. Acta Crystallogr. D Biol. Crystallogr. 62:1098-1100.
-
(2006)
Acta Crystallogr. D Biol. Crystallogr
, vol.62
, pp. 1098-1100
-
-
Suhre, K.1
Navaza, J.2
Sanejouand, Y.H.3
-
59
-
-
33745813129
-
Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies
-
Velazquez-Muriel, J. A., M. Valle, A. Santamaría-Pang, I. A. Kakadiaris, and J. M. Carazo. 2006. Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies. Structure. 14:1115-1126.
-
(2006)
Structure
, vol.14
, pp. 1115-1126
-
-
Velazquez-Muriel, J.A.1
Valle, M.2
Santamaría-Pang, A.3
Kakadiaris, I.A.4
Carazo, J.M.5
-
60
-
-
55949095660
-
Damped-dynamics flexible fitting
-
Kovacs, J. A., M. Yeager, and R. Abagyan. 2008. Damped-dynamics flexible fitting. Biophys. J. 95:3192-3207.
-
(2008)
Biophys. J
, vol.95
, pp. 3192-3207
-
-
Kovacs, J.A.1
Yeager, M.2
Abagyan, R.3
-
61
-
-
58749105833
-
Flexible fitting of high-resolution x-ray structures into cryo electron microscopy maps using biased molecular dynamics simulations
-
Orzechowski, M., and F. Tama. 2008. Flexible fitting of high-resolution x-ray structures into cryo electron microscopy maps using biased molecular dynamics simulations. Biophys. J. 95:5692-5705.
-
(2008)
Biophys. J
, vol.95
, pp. 5692-5705
-
-
Orzechowski, M.1
Tama, F.2
-
62
-
-
35649018226
-
Atomic level structural and functional model of a bacterial photosynthetic membrane vesicle
-
Sxener, M. K., J. D. Olsen, C. N. Hunter, and K. Schulten. 2007. Atomic level structural and functional model of a bacterial photosynthetic membrane vesicle. Proc. Natl. Acad. Sci. USA. 104:15723-15728.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 15723-15728
-
-
Sxener, M.K.1
Olsen, J.D.2
Hunter, C.N.3
Schulten, K.4
-
63
-
-
0030012293
-
The effect of different levels of the B800-B850 light-harvesting complex on intracytoplasmic membrane development in Rhodobacter sphaeroides
-
Sturgis, J. N., and R. A. Niederman. 1996. The effect of different levels of the B800-B850 light-harvesting complex on intracytoplasmic membrane development in Rhodobacter sphaeroides. Arch. Microbiol. 165:235-242.
-
(1996)
Arch. Microbiol
, vol.165
, pp. 235-242
-
-
Sturgis, J.N.1
Niederman, R.A.2
-
64
-
-
61349096947
-
Observations on the structure of Rhodospirillum molischianum
-
Hickman, D. D., and A. W. Frenkel. 1965. Observations on the structure of Rhodospirillum molischianum. J. Cell Biol. 25:261-278.
-
(1965)
J. Cell Biol
, vol.25
, pp. 261-278
-
-
Hickman, D.D.1
Frenkel, A.W.2
-
65
-
-
0342907750
-
Structure of a bacterial photosynthetic membrane
-
Miller, K. R. 1979. Structure of a bacterial photosynthetic membrane. Proc. Natl. Acad. Sci. USA. 76:6415-6419.
-
(1979)
Proc. Natl. Acad. Sci. USA
, vol.76
, pp. 6415-6419
-
-
Miller, K.R.1
-
66
-
-
34249325178
-
Aggregation and vesiculation of membrane proteins by curvature-mediated interactions
-
Reynwar, B. J., G. Illya, V. A. Harmandaris, M. M. Müller, K. Kremer, et al. 2007. Aggregation and vesiculation of membrane proteins by curvature-mediated interactions. Nature. 447:461-464.
-
(2007)
Nature
, vol.447
, pp. 461-464
-
-
Reynwar, B.J.1
Illya, G.2
Harmandaris, V.A.3
Müller, M.M.4
Kremer, K.5
-
67
-
-
33845505655
-
Curvature and hydrophobic forces drive constitutive association and modulate activity of rhodopsin in membranes
-
Botelho, A. V., T. Huber, T. P. Sakmar, and M. F. Brown. 2006. Curvature and hydrophobic forces drive constitutive association and modulate activity of rhodopsin in membranes. Biophys. J. 91:4464-4477.
-
(2006)
Biophys. J
, vol.91
, pp. 4464-4477
-
-
Botelho, A.V.1
Huber, T.2
Sakmar, T.P.3
Brown, M.F.4
-
68
-
-
0035975465
-
Kinetics of excitation migration and trapping in the photosynthetic unit of purple bacteria
-
Ritz, T., S. Park, and K. Schulten. 2001. Kinetics of excitation migration and trapping in the photosynthetic unit of purple bacteria. J. Phys. Chem. B. 105:8259-8267.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 8259-8267
-
-
Ritz, T.1
Park, S.2
Schulten, K.3
|