-
1
-
-
0037852202
-
The proteasome: Structure, function, and role in the cell
-
Adams J. The proteasome: structure, function, and role in the cell. Cancer Treat Rev. 2003;29:3-9. (Pubitemid 36626287)
-
(2003)
Cancer Treatment Reviews
, vol.29
, Issue.SUPPL. 1
, pp. 3-9
-
-
Adams, J.1
-
2
-
-
33749234748
-
Proteasomes and their associated ATPases: A destructive combination
-
DOI 10.1016/j.jsb.2006.04.012, PII S1047847706001547, AAA + Proteins
-
Smith D, Benaroudj N, Goldberg AL. Proteasomes and their associated ATPases: A destructive combination. J Structural Biol. 2006;156:72-83. (Pubitemid 44486067)
-
(2006)
Journal of Structural Biology
, vol.156
, Issue.1
, pp. 72-83
-
-
Smith, D.M.1
Benaroudj, N.2
Goldberg, A.3
-
4
-
-
3242714839
-
The ultimate nanoscale mincer: Assembly, structure and active sites of the 20S proteasome core
-
Heinemeyer W, Ramos PC, Dohmen RJ. The ultimate nanoscale mincer: assembly, structure and active sites of the 20S proteasome core. Cell Mol Life Sci. 2004;61:1562-1578. (Pubitemid 38962039)
-
(2004)
Cellular and Molecular Life Sciences
, vol.61
, Issue.13
, pp. 1562-1578
-
-
Heinemeyer, W.1
Ramos, P.C.2
Dohmen, R.J.3
-
5
-
-
0035074032
-
PAProC: A prediction algorithm for proteasomal cleavages available on the WWW
-
Nussbaum AK, Kuttler C, Hadeler KP, Rammensee HG, Schild H. PAProC: a prediction algorithm for proteasomal cleavages available on the WWW. Immunogenetics. 2001;53:87-94.
-
(2001)
Immunogenetics
, vol.53
, pp. 87-94
-
-
Nussbaum, A.K.1
Kuttler, C.2
Hadeler, K.P.3
Rammensee, H.G.4
Schild, H.5
-
6
-
-
0033849945
-
A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates
-
Holzhütter HG, Kloetzel PM. A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates. Biophysical J. 2000;79:1196-1205.
-
(2000)
Biophysical J.
, vol.79
, pp. 1196-1205
-
-
Holzhütter, H.G.1
Kloetzel, P.M.2
-
7
-
-
0036096708
-
Prediction of proteasome cleavage motifs by neural networks
-
Kesmir C, Nussbaum AK, Schild H, Detours V, Brunak S. Prediction of proteasome cleavage motifs by neural networks. Protein Eng. 2002;15:287-296. (Pubitemid 34532767)
-
(2002)
Protein Engineering
, vol.15
, Issue.4
, pp. 287-296
-
-
Kesmir, C.1
Nussbaum, A.K.2
Schild, H.3
Detours, V.4
Brunak, S.5
-
8
-
-
23144433033
-
Pcleavage: An SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences
-
DOI 10.1093/nar/gki587
-
Bhasin M, Raghava GPS. Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. Nucleic Acids Res. 2005;33:202-207. (Pubitemid 44529909)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Bhasin, M.1
Raghava, G.P.S.2
-
9
-
-
39149096295
-
Precise score for the prediction of peptides cleaved by the proteasome
-
DOI 10.1093/bioinformatics/btm616
-
Ginodi I, Vider-Shalit T, Tsaban L, Louzoun Y. Precise score for the prediction of peptides cleaved by the proteasome. Bioinformatics. 2008;24:477-483. (Pubitemid 351256290)
-
(2008)
Bioinformatics
, vol.24
, Issue.4
, pp. 477-483
-
-
Ginodi, I.1
Vider-Shalit, T.2
Tsaban, L.3
Louzoun, Y.4
-
10
-
-
0036777957
-
The importance of the proteasome and subsequent proteolytic steps in the generation of antigenic peptides
-
DOI 10.1016/S0161-5890(02)00098-6, PII S0161589002000986
-
Goldberg AL, Cascio P, Saric T, Rock KL. The importance of the proteasome and subsequent proteolytic steps in the generation of antigenic peptides. Mol Immunol. 2002;39:147-164. (Pubitemid 35013508)
-
(2002)
Molecular Immunology
, vol.39
, Issue.3-4
, pp. 147-164
-
-
Goldberg, A.L.1
Cascio, P.2
Saric, T.3
Rock, K.L.4
-
11
-
-
0036211926
-
JenPep: A database of quantitative functional peptide data for immunology
-
Blythe MJ, Doytchinova IA, Flower DR. JenPep: a database of quantitative functional peptide data for immunology. Bioinformatics. 2002;18:434-439.
-
(2002)
Bioinformatics
, vol.18
, pp. 434-439
-
-
Blythe, M.J.1
Doytchinova, I.A.2
Flower, D.R.3
-
12
-
-
0038350948
-
Predicting proteasomal cleavage sites: A comparison of available methods
-
Saxova P, Buus S, Brunak S, Kesmir C. Predicting proteasomal cleavage sites: a comparison of available methods. Int Immunol. 2003;15:781-787. (Pubitemid 36827066)
-
(2003)
International Immunology
, vol.15
, Issue.7
, pp. 781-787
-
-
Saxova, P.1
Buus, S.2
Brunak, S.3
Kesmir, C.4
-
13
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges CJC. A tutorial on support vector machines for pattern recognition. Data Mining and Knowledge Discovery. 1998;2:121-167. (Pubitemid 128695475)
-
(1998)
Data Mining and Knowledge Discovery
, vol.2
, Issue.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
14
-
-
0000545946
-
Improvements to Platt's SMO algorithm for SVM classifier design
-
DOI 10.1162/089976601300014493
-
Keerthi SS, Shevade SK, Bhattacharyya C, Murthy KRK. Improvements to platt's SMO algorithm for SVM classifier design. Neural Comput. 2001;13:637-649. (Pubitemid 33595014)
-
(2001)
Neural Computation
, vol.13
, Issue.3
, pp. 637-649
-
-
Keerthi, S.S.1
Shevade, S.K.2
Bhattacharyya, C.3
Murthy, K.R.K.4
-
15
-
-
3843052528
-
Prediction of CTL epitopes using QM, SVM and ANN techniques
-
Bhasin M, Raghava GP. Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine. 2004;22:3195-3204.
-
(2004)
Vaccine
, vol.22
, pp. 3195-3204
-
-
Bhasin, M.1
Raghava, G.P.2
-
16
-
-
0034723134
-
Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism
-
DOI 10.1006/jmbi.1999.3392
-
Altuvia Y, Margalit H. Sequence signals for generation of antigenic peptides by the proteasome: implications for proteasomal cleavage mechanism. J Mol Biol. 2000;295:879-890. (Pubitemid 30700932)
-
(2000)
Journal of Molecular Biology
, vol.295
, Issue.4
, pp. 879-890
-
-
Altuvia, Y.1
Margalit, H.2
-
17
-
-
0028070376
-
Existence of a molecular ruler in proteasomes suggested by analysis of degradation products
-
DOI 10.1016/0014-5793(94)00665-2
-
Wenzel T, Eckerskorn C, Lottspeich F, Baumeister W. Existence of a molecular ruler in proteasomes suggested by analysis of degradation products. FEBS Lett. 1994;349:205-209. (Pubitemid 24263263)
-
(1994)
FEBS Letters
, vol.349
, Issue.2
, pp. 205-209
-
-
Wenzel, T.1
-
18
-
-
0033525086
-
The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation
-
Kisselev AF, Akopian TN, Woo KM, Goldberg AL. The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation. J Biol Chem. 1999;274:3363-3371.
-
(1999)
J Biol Chem.
, vol.274
, pp. 3363-3371
-
-
Kisselev, A.F.1
Akopian, T.N.2
Woo, K.M.3
Goldberg, A.L.4
-
19
-
-
0025780027
-
Degradation of oxidized insulin B chain by the multiproteinase complex macropain (proteasome)
-
Dick LR, Moomaw CR, DeMartino GN, Slaughter CA. Degradation of oxidized insulin B chain by the multiproteinase complex macropain (proteasome). Biochemistry. 1991;30:2725-2734.
-
(1991)
Biochemistry
, vol.30
, pp. 2725-2734
-
-
Dick, L.R.1
Moomaw, C.R.2
DeMartino, G.N.3
Slaughter, C.A.4
-
20
-
-
7944235990
-
A structure-based approach for prediction of MHC-binding peptides
-
DOI 10.1016/j.ymeth.2004.06.008, PII S1046202304001276, Bioinformatics in Vaccine Design
-
Altuvia Y, Margalit H. A structure-based approach for prediction of MHC-binding peptides. Methods. 2004;34:454-459. (Pubitemid 39469052)
-
(2004)
Methods
, vol.34
, Issue.4
, pp. 454-459
-
-
Altuvia, Y.1
Margalit, H.2
-
21
-
-
0025855156
-
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
-
Falk K, Rotzschke O, Stevanovic S, Jung G, Rammensee HG. Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules. Nature. 1991;351:290-296. (Pubitemid 21896578)
-
(1991)
Nature
, vol.351
, Issue.6324
, pp. 290-296
-
-
Falk, K.1
Rotzschke, O.2
Stevanovic, S.3
Jung, G.4
Rammensee, H.-G.5
-
22
-
-
0032514684
-
Cleavage motifs of the yeast 20S proteasome β subunits deduced from digests of enolase 1
-
DOI 10.1073/pnas.95.21.12504
-
Nussbaum AK, Dick TP, Keilholz W, et al. Cleavage motifs of the yeast 20S proteasome β subunits deduced from digests of enolase 1. Proc Natl Acad Sci U S A. 1998;95:12504-12509. (Pubitemid 28483794)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.21
, pp. 12504-12509
-
-
Nussbaum, A.K.1
Dick, T.P.2
Keilholz, W.3
Schirle, M.4
Stevanovic, S.5
Dietz, K.6
Heinemeyer, W.7
Groll, M.8
Wolf, D.H.9
Huber, R.10
Rammensee, H.-G.11
Schild, H.12
-
23
-
-
0036103598
-
The structure of the mammalian 20S proteasome at 2.75 A resolution
-
DOI 10.1016/S0969-2126(02)00748-7, PII S0969212602007487
-
Unno M, Mizushima T, Morimoto Y, et al. The structure of the mammalian 20S proteasome at 2.75 A resolution. Structure. 2002;10:609-618. (Pubitemid 34518706)
-
(2002)
Structure
, vol.10
, Issue.5
, pp. 609-618
-
-
Unno, M.1
Mizushima, T.2
Morimoto, Y.3
Tomisugi, Y.4
Tanaka, K.5
Yasuoka, N.6
Tsukihara, T.7
-
24
-
-
33847059662
-
The QSAR model study of interaction between peptides and MHC molecules
-
Song Z, Liu T, Liu W, Zhu MH, Wang XG. The QSAR model study of interaction between peptides and MHC molecules. Acta Phys Chim Sin. 2007;23:198-205.
-
(2007)
Acta Phys Chim Sin.
, vol.23
, pp. 198-205
-
-
Song, Z.1
Liu, T.2
Liu, W.3
Zhu, M.H.4
Wang, X.G.5
-
25
-
-
34648846689
-
Prediction of CTL epitopes based on modified artificial neural network
-
Liu T, Song Z, Liu W, Wang XY, Qiu XM. Prediction of CTL epitopes based on modified artificial neural network. J Dalian Univ Technol. 2007;47:473-478. (Pubitemid 47453129)
-
(2007)
Dalian Ligong Daxue Xuebao/Journal of Dalian University of Technology
, vol.47
, Issue.4
, pp. 473-478
-
-
Liu, T.1
Song, Z.2
Liu, W.3
Wang, X.-Y.4
Qiu, X.-M.5
-
26
-
-
58149527677
-
Application of partial least square method in studying of the quantitative structure-activity relationship of T cells epitopes
-
Song Z, Liu T, Wang XY, Liu W. Application of partial least square method in studying of the quantitative structure-activity relationship of T cells epitopes. Mian Yi Xue Za Zhi. 2007;23:166-171.
-
(2007)
Mian Yi Xue Za Zhi
, vol.23
, pp. 166-171
-
-
Song, Z.1
Liu, T.2
Wang, X.Y.3
Liu, W.4
|