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Volumn 12, Issue 3, 2009, Pages 293-310

Emergent network structure, evolvable robustness, and nonlinear effects of point mutations in an artificial genome model

Author keywords

Artificial genome; Evolution; Gene regulatory network

Indexed keywords


EID: 68349157426     PISSN: 02195259     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219525909002210     Document Type: Article
Times cited : (7)

References (25)
  • 1
    • 7444226210 scopus 로고    scopus 로고
    • On the dynamics of an artificial regulatory network
    • Banzhaf, W, Christaller, T, Dittrich, P, Kim, J. and Ziegler, J, eds, Advances in Artificial Life, Proceedings of the 7th European Conference ECAL-2003, Dortmund, 15-17 September, Springer, Berlin
    • Banzhaf, W., On the dynamics of an artificial regulatory network, Banzhaf, W., Christaller, T., Dittrich, P., Kim, J. and Ziegler, J. (eds.), Advances in Artificial Life, Proceedings of the 7th European Conference (ECAL-2003), Dortmund, 15-17 September 2003, Lecture Notes in Artificial Intelligence, LNAI 2801 (Springer, Berlin, 2003), pp. 217-227.
    • (2003) Lecture Notes in Artificial Intelligence, LNAI , vol.2801 , pp. 217-227
    • Banzhaf, W.1
  • 2
    • 0034717395 scopus 로고    scopus 로고
    • Topological evolution of dynamical networks: Global criticality from local dynamics
    • Bornholdt, S. and Rohlf, T., Topological evolution of dynamical networks: Global criticality from local dynamics, Phys. Rev. Lett. 84 (2000) 6114-6117.
    • (2000) Phys. Rev. Lett , vol.84 , pp. 6114-6117
    • Bornholdt, S.1    Rohlf, T.2
  • 3
    • 0000256450 scopus 로고    scopus 로고
    • Neutral mutations and punctuated equilibrium in evolving genetic networks
    • Bornholdt, S. and Sneppen, K., Neutral mutations and punctuated equilibrium in evolving genetic networks, Phys. Rev. Lett. 81 (1998) 236-239.
    • (1998) Phys. Rev. Lett , vol.81 , pp. 236-239
    • Bornholdt, S.1    Sneppen, K.2
  • 4
    • 33847268619 scopus 로고    scopus 로고
    • Robustness can evolve gradually in complex regulatory networks with varying topology
    • Ciliberti, S., Martin, O. C. and Wagner, A., Robustness can evolve gradually in complex regulatory networks with varying topology, PLoS Comput. Biol. 3 (2007) e15.
    • (2007) PLoS Comput. Biol , vol.3
    • Ciliberti, S.1    Martin, O.C.2    Wagner, A.3
  • 5
    • 48249134043 scopus 로고    scopus 로고
    • Crombach, A. and Hogeweg, P., Evolution of evolvability in gene regulatory networks, PloS Comput. Biol. 4 (2008) e1000112.
    • Crombach, A. and Hogeweg, P., Evolution of evolvability in gene regulatory networks, PloS Comput. Biol. 4 (2008) e1000112.
  • 6
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A literature review
    • de Jong, H., Modeling and simulation of genetic regulatory systems: A literature review, J. Comp. Biol. 9 (2002) 67-103.
    • (2002) J. Comp. Biol , vol.9 , pp. 67-103
    • de Jong, H.1
  • 7
    • 2942552376 scopus 로고    scopus 로고
    • Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
    • Dobrin, R., Beg, Q. K., Barabási, A. L. and Oltvai, Z. N., Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network, BMC Bioinform. 5 (2004) 10.
    • (2004) BMC Bioinform , vol.5 , pp. 10
    • Dobrin, R.1    Beg, Q.K.2    Barabási, A.L.3    Oltvai, Z.N.4
  • 10
    • 33846867274 scopus 로고    scopus 로고
    • Neutral fitness landscapes in signalling networks
    • Fernandez, P. and Sole, R., Neutral fitness landscapes in signalling networks, J. R. Soc. Interface 4 (2007) 41-47.
    • (2007) J. R. Soc. Interface , vol.4 , pp. 41-47
    • Fernandez, P.1    Sole, R.2
  • 11
    • 0015609281 scopus 로고
    • The logical analysis of continous, nonlinear biochemical control networks
    • Glass, L., The logical analysis of continous, nonlinear biochemical control networks, J. Theor. Biol. 39 (1973) 103-129.
    • (1973) J. Theor. Biol , vol.39 , pp. 103-129
    • Glass, L.1
  • 13
    • 6344241652 scopus 로고    scopus 로고
    • Conservation and coevolution in the scale-free human gene coexpression network
    • Jordan, I. K., Mari-Ramez, L., Wolf, Y. I. and Koonin, E. V., Conservation and coevolution in the scale-free human gene coexpression network, Mol. Biol. Evol. 21 (2004) 2058-2070.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 2058-2070
    • Jordan, I.K.1    Mari-Ramez, L.2    Wolf, Y.I.3    Koonin, E.V.4
  • 14
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly connected nets
    • Kauffman, S. A., Metabolic stability and epigenesis in randomly connected nets, J. Theor. Biol. 22 (1969) 437-469.
    • (1969) J. Theor. Biol , vol.22 , pp. 437-469
    • Kauffman, S.A.1
  • 15
    • 33746897154 scopus 로고    scopus 로고
    • Evolving dynamics in an artificial regulatory network model
    • Proc. of the Parallel Problem Solving from Nature Conference PPSN-04, Birmingham, UK, September 2004, Yao, Burke, E, Lozano, J. A, Smith, J, Merelo-Guerv, J. J, Bullinaria, J. A, Rowe, J, Tino, P, Kab, A. and Schwefel, H.-P, eds, Springer, 3242, Berlin
    • Kuo, P. D., Leier, A. and Banzhaf, W., Evolving dynamics in an artificial regulatory network model, in Proc. of the Parallel Problem Solving from Nature Conference (PPSN-04), Birmingham, UK, September 2004, Yao, X., Burke, E., Lozano, J. A., Smith, J., Merelo-Guerv, J. J., Bullinaria, J. A., Rowe, J., Tino, P., Kab, A. and Schwefel, H.-P. (eds.) (Springer, LNCS 3242, Berlin, 2004), pp. 571-580.
    • (2004) LNCS , vol.10 , pp. 571-580
    • Kuo, P.D.1    Leier, A.2    Banzhaf, W.3
  • 16
    • 0000491825 scopus 로고
    • Correspondence between neural threshold networks and Kauffman boolean cellular automata
    • Kürten, K. E., Correspondence between neural threshold networks and Kauffman boolean cellular automata, J. Phys. A 21 (1988b) L615-L619.
    • (1988) J. Phys. A , vol.21
    • Kürten, K.E.1
  • 17
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth, and information in fluctuating environments
    • Kussell, E. and Leibler, S., Phenotypic diversity, population growth, and information in fluctuating environments, Science 309 (2005) 275-278.
    • (2005) Science , vol.309 , pp. 275-278
    • Kussell, E.1    Leibler, S.2
  • 18
    • 34547271244 scopus 로고    scopus 로고
    • Analysis of preferential network motif generation in an artificial regulatory network model created by duplication and divergence
    • Leier, A., Kuo, D. P. and Banzhaf, W., Analysis of preferential network motif generation in an artificial regulatory network model created by duplication and divergence, Adv. in Complex Syst. 10 (2007) 155-172.
    • (2007) Adv. in Complex Syst , vol.10 , pp. 155-172
    • Leier, A.1    Kuo, D.P.2    Banzhaf, W.3
  • 19
    • 84957670701 scopus 로고    scopus 로고
    • Dynamics of gene expression in an artificial genome - implications for biological and artificial ontogeny
    • Springer
    • Reil, T., Dynamics of gene expression in an artificial genome - implications for biological and artificial ontogeny, in Proc. 5th European Conf. Artificial Life (Springer, 1999), pp. 457-466.
    • (1999) Proc. 5th European Conf. Artificial Life , pp. 457-466
    • Reil, T.1
  • 20
    • 0036644807 scopus 로고    scopus 로고
    • Criticality in random threshold networks: Annealed approximation and beyond
    • Rohlf, T. and Bornholdt, S., Criticality in random threshold networks: Annealed approximation and beyond, Physica A 310 (2002) 245-259.
    • (2002) Physica A , vol.310 , pp. 245-259
    • Rohlf, T.1    Bornholdt, S.2
  • 21
    • 0036678862 scopus 로고    scopus 로고
    • Waddington's canalization revisited: Developmental stability and evolution
    • Siegal, M. L. and Bergman, A., Waddington's canalization revisited: Developmental stability and evolution, Proc. Natl. Acad. Sci. 99 (2002) 10528-10532.
    • (2002) Proc. Natl. Acad. Sci , vol.99 , pp. 10528-10532
    • Siegal, M.L.1    Bergman, A.2
  • 22
    • 2442537233 scopus 로고    scopus 로고
    • Gene regulatory network growth by duplication
    • Teichmann, S. A. and Babu, M. M., Gene regulatory network growth by duplication, Nat. Genet. 36 (2004) 492-496.
    • (2004) Nat. Genet , vol.36 , pp. 492-496
    • Teichmann, S.A.1    Babu, M.M.2
  • 23
    • 0033055592 scopus 로고    scopus 로고
    • The modularity of biological regulatory networks
    • Thieffry, D. and Romero, D., The modularity of biological regulatory networks, Biosystems 50 (1999) 49-59.
    • (1999) Biosystems , vol.50 , pp. 49-59
    • Thieffry, D.1    Romero, D.2
  • 24
    • 0034029892 scopus 로고    scopus 로고
    • Robustness against mutations in genetic networks of yeast
    • Wagner, A., Robustness against mutations in genetic networks of yeast, Nat. Genet. 24 (2000) 355-361.
    • (2000) Nat. Genet , vol.24 , pp. 355-361
    • Wagner, A.1
  • 25
    • 4544308322 scopus 로고    scopus 로고
    • Towards more biological mutation operators in gene regulation studies
    • Watson, J., Geard, N. and Wiles, J., Towards more biological mutation operators in gene regulation studies, Biosystems 76 (2004) 239-248.
    • (2004) Biosystems , vol.76 , pp. 239-248
    • Watson, J.1    Geard, N.2    Wiles, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.