-
1
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes
-
doi:10.1016/S0022- 5193(03)00035-3
-
Albert, R. & Othmer, H. G. 2003 The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes. J. Theor. Biol. 223, 1-18. (doi:10.1016/S0022- 5193(03)00035-3)
-
(2003)
J. Theor. Biol
, vol.223
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
2
-
-
0003880161
-
-
New York, NY: Garland
-
Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. & Walter, P. 2002 Molecular biology of the cell, IV edn. New York, NY: Garland.
-
(2002)
Molecular biology of the cell, IV edn
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
3
-
-
0034667684
-
Plasticity, evolvability and modularity in RNA
-
doi:10. 1002/1097-010X(20001015)288:3〈242::AID-JEZ5〉3.0.CO;2-O
-
Ancel, L. W. & Fontana, W. 2000 Plasticity, evolvability and modularity in RNA. J. Exp. Zool. 288, 242-283. (doi:10. 1002/1097-010X(20001015)288:3〈242::AID-JEZ5〉3.0.CO;2-O)
-
(2000)
J. Exp. Zool
, vol.288
, pp. 242-283
-
-
Ancel, L.W.1
Fontana, W.2
-
4
-
-
0030625954
-
Neutral networks in protein space: A computational study based on knowledge-based potentials of mean force
-
doi:10.1016/S1359-0278(97)00037-0
-
Babajide, A., Hofacker, I. L., Sippl, M. J. & Stadler, P. F. 1997 Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force. Fold. Des. 2, 169-261. (doi:10.1016/S1359-0278(97)00037-0)
-
(1997)
Fold. Des
, vol.2
, pp. 169-261
-
-
Babajide, A.1
Hofacker, I.L.2
Sippl, M.J.3
Stadler, P.F.4
-
5
-
-
33846861909
-
Evolution on neutral networks in genetic programming
-
ed. T. Yu, R. Riolo & B. Worzel, pp, Boston, MA: Kluwer Academic
-
Banzhaf, W. & Leier, A. 2006 Evolution on neutral networks in genetic programming. In Genetic programming - theory and applications III (ed. T. Yu, R. Riolo & B. Worzel), pp. 207-221. Boston, MA: Kluwer Academic.
-
(2006)
Genetic programming - theory and applications III
, pp. 207-221
-
-
Banzhaf, W.1
Leier, A.2
-
6
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
doi:10.1038/nrg1272
-
Barabási, A.-L. & Oltvai, Z. N. 2004 Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5, 101-113. (doi:10.1038/nrg1272)
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.-L.1
Oltvai, Z.N.2
-
7
-
-
0025276049
-
Intracellular signalling as a parallel distributed process
-
Bray, D. 1990 Intracellular signalling as a parallel distributed process. J. Theor. Biol. 143, 215-231.
-
(1990)
J. Theor. Biol
, vol.143
, pp. 215-231
-
-
Bray, D.1
-
8
-
-
0029037739
-
Protein molecules as computational elements in living cells
-
doi:10.1038/376307a0
-
Bray, D. 1995 Protein molecules as computational elements in living cells. Nature 376, 307-312. (doi:10.1038/376307a0)
-
(1995)
Nature
, vol.376
, pp. 307-312
-
-
Bray, D.1
-
9
-
-
85040437712
-
How neutral networks influence evolvability
-
doi:10.1002/cplx. 10021
-
Ebner, M., Shackleton, M. & Shipman, R. 2002 How neutral networks influence evolvability. Complexity 7, 19-33. (doi:10.1002/cplx. 10021)
-
(2002)
Complexity
, vol.7
, pp. 19-33
-
-
Ebner, M.1
Shackleton, M.2
Shipman, R.3
-
10
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
doi:10.1038/35002125
-
Elowitz, M. B. & Leibler, S. 2000 A synthetic oscillatory network of transcriptional regulators. Nature 403, 335-338. (doi:10.1038/35002125)
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
12
-
-
0032558169
-
Effects of selective neutrality on the evolution of molecular species
-
doi:10.1098/rspb.1998.0438
-
Engelhardt, R. & Newman, M. E. J. 1998 Effects of selective neutrality on the evolution of molecular species. Proc. R. Soc. B 265, 1333-1338. (doi:10.1098/rspb.1998.0438)
-
(1998)
Proc. R. Soc. B
, vol.265
, pp. 1333-1338
-
-
Engelhardt, R.1
Newman, M.E.J.2
-
13
-
-
16644389406
-
A gene regulatory network model for cell-fate determination during Arabidopsis thaliana that is robust and recovers experimental gene expression profiles
-
doi:10.1105/tpc.104. 021725
-
Espinosa-Soto, C., Padilla-Longoria, P. & Alvarez-Buylla, E. R. 2004 A gene regulatory network model for cell-fate determination during Arabidopsis thaliana that is robust and recovers experimental gene expression profiles. Plant Cell 16, 2923-2939. (doi:10.1105/tpc.104. 021725)
-
(2004)
Plant Cell
, vol.16
, pp. 2923-2939
-
-
Espinosa-Soto, C.1
Padilla-Longoria, P.2
Alvarez-Buylla, E.R.3
-
14
-
-
33846864345
-
The role of computation in complex regulatory networks
-
ed. E. V. Koonin et al, pp, Georgetown, TX: Landes BioScience
-
Fernández, P. & Solé, R. V. 2006 The role of computation in complex regulatory networks. In Power laws, scale-free networks and genome biology (ed. E. V. Koonin et al.), pp. 206-225. Georgetown, TX: Landes BioScience.
-
(2006)
Power laws, scale-free networks and genome biology
, pp. 206-225
-
-
Fernández, P.1
Solé, R.V.2
-
15
-
-
0032577365
-
Continuity in evolution: On the nature of transitions
-
doi:10.1126/science.280.5368.1451
-
Fontana, W. & Schuster, P. 1998 Continuity in evolution: on the nature of transitions. Science 280, 1451-1455. (doi:10.1126/science.280.5368.1451)
-
(1998)
Science
, vol.280
, pp. 1451-1455
-
-
Fontana, W.1
Schuster, P.2
-
17
-
-
0037165942
-
Combinatorial synthesis of genetic networks
-
doi:10.1126/science.1067407
-
Guet, C. C., Elowitz, M. B., Hsing, W. & Leibler, S. 2002 Combinatorial synthesis of genetic networks. Science 24, 1466-1470. (doi:10.1126/science.1067407)
-
(2002)
Science
, vol.24
, pp. 1466-1470
-
-
Guet, C.C.1
Elowitz, M.B.2
Hsing, W.3
Leibler, S.4
-
19
-
-
0027940353
-
Physics, computation, and why biology looks so different
-
doi:10.1006/ jtbi.1994.1211
-
Hopfield, J. J. 1994 Physics, computation, and why biology looks so different. J. Theor. Biol. 171, 53-60. (doi:10.1006/ jtbi.1994.1211)
-
(1994)
J. Theor. Biol
, vol.171
, pp. 53-60
-
-
Hopfield, J.J.1
-
20
-
-
0030030533
-
Smoothness within ruggedness: The role of neutrality in adaptation
-
doi:10.1073/pnas.93.1.397
-
Huynen, M. A., Stadler, P. F. & Fontana, W. 1996 Smoothness within ruggedness: the role of neutrality in adaptation. Proc. Natl Acad. Sci. USA 93, 397-401. (doi:10.1073/pnas.93.1.397)
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 397-401
-
-
Huynen, M.A.1
Stadler, P.F.2
Fontana, W.3
-
21
-
-
0017771466
-
Evolution and tinkering
-
Jacob, F. 1977 Evolution and tinkering. Science 196, 1161-1166.
-
(1977)
Science
, vol.196
, pp. 1161-1166
-
-
Jacob, F.1
-
23
-
-
0032555135
-
Evolvability
-
doi:10.1073/pnas.95.15. 8420
-
Kirschner, M. & Gerhart, J. 1998 Evolvability. Proc. Natl Acad. Sci. USA 95, 8420-8427. (doi:10.1073/pnas.95.15. 8420)
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 8420-8427
-
-
Kirschner, M.1
Gerhart, J.2
-
24
-
-
2942614884
-
Programmable cells: Interfacing natural and engineered gene networks
-
doi:10.1073/pnas.0402940101
-
Kobayashi, H., Kaern, M., Araki, M., Chung, K., Gardner, T. S., Cantor, C. R. & Collins, J. J. 2004 Programmable cells: interfacing natural and engineered gene networks. Proc. Natl Acad. Sci. USA 101, 8414-8419. (doi:10.1073/pnas.0402940101)
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 8414-8419
-
-
Kobayashi, H.1
Kaern, M.2
Araki, M.3
Chung, K.4
Gardner, T.S.5
Cantor, C.R.6
Collins, J.J.7
-
25
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams, H. H. & Shapiro, L. 1995 Circuit simulation of genetic networks. Science 269, 650-656.
-
(1995)
Science
, vol.269
, pp. 650-656
-
-
McAdams, H.H.1
Shapiro, L.2
-
26
-
-
0032879544
-
Genetic control of flower morphogenesis in Arabidopsis thaliana: A logical analysis
-
doi:10.1093/bioinformatics/ 15.7.593
-
Mendoza, L., Thieffry, D. & Alvarez-Buylla, E. R. 1999 Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics 15, 593-606. (doi:10.1093/bioinformatics/ 15.7.593)
-
(1999)
Bioinformatics
, vol.15
, pp. 593-606
-
-
Mendoza, L.1
Thieffry, D.2
Alvarez-Buylla, E.R.3
-
27
-
-
0003444646
-
-
Rumelhart, D. E. & McClelland, J. L, eds, Cambridge, MA: MIT Press
-
Rumelhart, D. E. & McClelland, J. L. (eds) 1986 Parallel distributed processing: explorations in the microstructure of cognition Foundations, vol. 1. Cambridge, MA: MIT Press.
-
(1986)
Parallel distributed processing: Explorations in the microstructure of cognition Foundations
, vol.1
-
-
-
28
-
-
85040434246
-
How does complexity arise in evolution? Complexity
-
doi:10.1002/(SICI)1099-0526(1996 09/10)2:〈22::AID-CPLX6〉3.0.CO;2-H
-
Schuster, P. 1996 How does complexity arise in evolution? Complexity 2, 22-30. (doi:10.1002/(SICI)1099-0526(1996 09/10)2:〈22::AID-CPLX6〉3.0.CO;2-H)
-
(1996)
, vol.2
, pp. 22-30
-
-
Schuster, P.1
-
29
-
-
85040494333
-
Networks in molecular evolution
-
doi:10.1002/cplx.10052
-
Schuster, P. & Stadler, P. F. 2002 Networks in molecular evolution. Complexity 8, 34-42. (doi:10.1002/cplx.10052)
-
(2002)
Complexity
, vol.8
, pp. 34-42
-
-
Schuster, P.1
Stadler, P.F.2
-
30
-
-
0028196714
-
From sequences to shapes and back: A case study in RNA secondary structures
-
Schuster, P., Fontana, W., Stadler, P. F. & Hofacker, I. L. 1994 From sequences to shapes and back: a case study in RNA secondary structures. Proc. R. Soc. B 255, 279-284.
-
(1994)
Proc. R. Soc. B
, vol.255
, pp. 279-284
-
-
Schuster, P.1
Fontana, W.2
Stadler, P.F.3
Hofacker, I.L.4
-
31
-
-
85040474279
-
Selection, tinkering and emergence in complex networks
-
Solé, R. V., Ferrer, R., Montoya, J. M. & Valverde, S. 2002 Selection, tinkering and emergence in complex networks. Complexity 8, 20-33.
-
(2002)
Complexity
, vol.8
, pp. 20-33
-
-
Solé, R.V.1
Ferrer, R.2
Montoya, J.M.3
Valverde, S.4
-
32
-
-
0035930008
-
The topology of the possible: Formal spaces underlying patterns of evolutionary change
-
doi:10.1006/jtbi.2001.2423
-
Stadler, B. M. R., Stadler, P. F., Wagner, G. P. & Fontana, W. 2001 The topology of the possible: formal spaces underlying patterns of evolutionary change. Theor. Biol. 213, 241-274. (doi:10.1006/jtbi.2001.2423)
-
(2001)
Theor. Biol
, vol.213
, pp. 241-274
-
-
Stadler, B.M.R.1
Stadler, P.F.2
Wagner, G.P.3
Fontana, W.4
-
33
-
-
0033826584
-
Metastable evolutionary dynamics: Crossing fitness barriers or escaping via neutral paths?
-
doi:10. 1006/bulm.2000.0180
-
van Nimwegen, E. & Crutchfield, J. P. 2000 Metastable evolutionary dynamics: crossing fitness barriers or escaping via neutral paths? Bull. Math. Biol. 5, 799-848. (doi:10. 1006/bulm.2000.0180)
-
(2000)
Bull. Math. Biol
, vol.5
, pp. 799-848
-
-
van Nimwegen, E.1
Crutchfield, J.P.2
-
34
-
-
0033578335
-
Neutral evolution of mutational robustness
-
doi:10.1073/pnas.96.17. 9716
-
van Nimwegen, E., Crutchfield, J. P. & Huynen, M. 1998 Neutral evolution of mutational robustness. Proc. Natl Acad. Sci. USA 96, 9716-9720. (doi:10.1073/pnas.96.17. 9716)
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 9716-9720
-
-
van Nimwegen, E.1
Crutchfield, J.P.2
Huynen, M.3
-
35
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
doi:10.1126/science.283.5400.381
-
Weng, G., Bhalla, U. S. & Iyengar, R. 1999 Emergent properties of networks of biological signaling pathways. Science 283, 381-387. (doi:10.1126/science.283.5400.381)
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Weng, G.1
Bhalla, U.S.2
Iyengar, R.3
-
36
-
-
84937413225
-
Neutrality and the evolvability of Boolean function landscape
-
Proc. Fourth European Conf. genetic programming, Berlin, Germany: Springer
-
Yu, T. & Miller, J. F. 2001 Neutrality and the evolvability of Boolean function landscape. In Proc. Fourth European Conf. genetic programming. Lecture Notes in Computer Science, vol. 2038, pp. 204-217. Berlin, Germany: Springer.
-
(2001)
Lecture Notes in Computer Science
, vol.2038
, pp. 204-217
-
-
Yu, T.1
Miller, J.F.2
|