메뉴 건너뛰기




Volumn 2009, Issue , 2009, Pages

Methodologies for in vitro cloning of small rnas and application for plant genome(s)

Author keywords

[No Author keywords available]

Indexed keywords

GOSSYPIUM HIRSUTUM;

EID: 68149168717     PISSN: 16875370     EISSN: 16875389     Source Type: Journal    
DOI: 10.1155/2009/915061     Document Type: Review
Times cited : (12)

References (65)
  • 1
    • 0001359591 scopus 로고
    • Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans
    • Napoli C., Lemieux C., Jorgensen R., Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans The Plant Cell 1990 2 4 279 289
    • (1990) The Plant Cell , vol.2 , Issue.4 , pp. 279-289
    • Napoli, C.1    Lemieux, C.2    Jorgensen, R.3
  • 2
    • 0025405838 scopus 로고
    • Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression
    • van der Krol A. R., Mur L. A., Beld M., Mol J. N. M., Stuitje A. R., Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression The Plant Cell 1990 2 4 291 299
    • (1990) The Plant Cell , vol.2 , Issue.4 , pp. 291-299
    • Van Der Krol, A.R.1    Mur, L.A.2    Beld, M.3    Mol, J.N.M.4    Stuitje, A.R.5
  • 3
    • 0026441194 scopus 로고
    • Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences
    • Romano N., Macino G., Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences Molecular Microbiology 1992 6 22 3343 3353
    • (1992) Molecular Microbiology , vol.6 , Issue.22 , pp. 3343-3353
    • Romano, N.1    Macino, G.2
  • 4
    • 0030885595 scopus 로고    scopus 로고
    • Isolation of quelling-defective (qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa
    • Cogoni C., Macino G., Isolation of quelling-defective (qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa Proceedings of the National Academy of Sciences of the United States of America 1997 94 19 10233 10238
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.19 , pp. 10233-10238
    • Cogoni, C.1    Macino, G.2
  • 5
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
    • DOI 10.1038/35888
    • Fire A., Xu S., Montgomery M. K., Kostas S. A., Driver S. E., Mello C. C., Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 1998 391 6669 806 811 (Pubitemid 28099681)
    • (1998) Nature , vol.391 , Issue.6669 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 6
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • Meister G., Tuschl T., Mechanisms of gene silencing by double-stranded RNA Nature 2004 431 7006 343 349
    • (2004) Nature , vol.431 , Issue.7006 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 7
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee R. C., Feinbaum R. L., Ambros V., The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 1993 75 5 843 854
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 8
    • 0027730383 scopus 로고
    • Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
    • Wightman B., Ha I., Ruvkun G., Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans Cell 1993 75 5 855 862
    • (1993) Cell , vol.75 , Issue.5 , pp. 855-862
    • Wightman, B.1    Ha, I.2    Ruvkun, G.3
  • 9
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M., Rauhut R., Lendeckel W., Tuschl T., Identification of novel genes coding for small expressed RNAs Science 2001 294 5543 853 858
    • (2001) Science , vol.294 , Issue.5543 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 10
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau N. C., Lim L. P., Weinstein E. G., Bartel D. P., An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans Science 2001 294 5543 858 862
    • (2001) Science , vol.294 , Issue.5543 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 11
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee R. C., Ambros V., An extensive class of small RNAs in Caenorhabditis elegans Science 2001 294 5543 862 864
    • (2001) Science , vol.294 , Issue.5543 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 13
    • 28044455435 scopus 로고    scopus 로고
    • MicroPrimer: the biogenesis and function of microRNA
    • Du T., Zamore P. D., microPrimer: the biogenesis and function of microRNA Development 2005 132 21 4645 4652
    • (2005) Development , vol.132 , Issue.21 , pp. 4645-4652
    • Du, T.1    Zamore, P.D.2
  • 14
    • 33847036990 scopus 로고    scopus 로고
    • Strategies for silencing human disease using RNA interference
    • Kim D. H., Rossi J. J., Strategies for silencing human disease using RNA interference Nature Reviews Genetics 2007 8 3 173 184
    • (2007) Nature Reviews Genetics , vol.8 , Issue.3 , pp. 173-184
    • Kim, D.H.1    Rossi, J.J.2
  • 15
    • 34248682403 scopus 로고    scopus 로고
    • RNAi therapeutics: principles, prospects and challenges
    • Aagaard L., Rossi J. J., RNAi therapeutics: principles, prospects and challenges Advanced Drug Delivery Reviews 2007 59 2-3 75 86
    • (2007) Advanced Drug Delivery Reviews , vol.59 , Issue.23 , pp. 75-86
    • Aagaard, L.1    Rossi, J.J.2
  • 16
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D. P., MicroRNAs: genomics, biogenesis, mechanism, and function Cell 2004 116 2 281 297
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 17
    • 18344373363 scopus 로고    scopus 로고
    • Small RNAs: classification, biogenesis, and function
    • Kim V. N., Small RNAs: classification, biogenesis, and function Molecules and Cells 2005 19 1 1 15
    • (2005) Molecules and Cells , vol.19 , Issue.1 , pp. 1-15
    • Kim, V.N.1
  • 18
    • 79956060855 scopus 로고    scopus 로고
    • Analysis of miRNA content in total RNA preparations using the Agilent 2100 bioanalyzer
    • Agilent Technologies, Palo Alto, Calif, USA
    • Tissot C., Analysis of miRNA content in total RNA preparations using the Agilent 2100 bioanalyzer. Agilent Technologies, Palo Alto, Calif, USA, http://www.chem.agilent.com/Library/applications/5989-7870EN.pdf
    • Agilent Technologies
    • Tissot, C.1
  • 20
    • 34548687914 scopus 로고    scopus 로고
    • Construction of small RNA cDNA libraries for deep sequencing
    • Lu C., Meyers B. C., Green P. J., Construction of small RNA cDNA libraries for deep sequencing Methods 2007 43 2 110 117
    • (2007) Methods , vol.43 , Issue.2 , pp. 110-117
    • Lu, C.1    Meyers, B.C.2    Green, P.J.3
  • 21
    • 21344438211 scopus 로고    scopus 로고
    • Identification of human fetal liver miRNAs by a novel method
    • Fu H., Tie Y., Xu C., Identification of human fetal liver miRNAs by a novel method FEBS Letters 2005 579 17 3849 3854
    • (2005) FEBS Letters , vol.579 , Issue.17 , pp. 3849-3854
    • Fu, H.1    Tie, Y.2    Xu, C.3
  • 25
    • 20844463414 scopus 로고    scopus 로고
    • Identification of microRNAs of the herpesvirus family
    • Pfeffer S., Sewer A., Lagos-Quintana M., Identification of microRNAs of the herpesvirus family Nature Methods 2005 2 4 269 276
    • (2005) Nature Methods , vol.2 , Issue.4 , pp. 269-276
    • Pfeffer, S.1    Sewer, A.2    Lagos-Quintana, M.3
  • 26
    • 26944443861 scopus 로고    scopus 로고
    • Identification and characterization of small RNAs involved in RNA silencing
    • Aravin A., Tuschl T., Identification and characterization of small RNAs involved in RNA silencing FEBS Letters 2005 579 26 5830 5840
    • (2005) FEBS Letters , vol.579 , Issue.26 , pp. 5830-5840
    • Aravin, A.1    Tuschl, T.2
  • 27
    • 22344449952 scopus 로고    scopus 로고
    • The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    • Chen P. Y., Manninga H., Slanchev K., The developmental miRNA profiles of zebrafish as determined by small RNA cloning Genes Development 2005 19 11 1288 1293
    • (2005) Genes Development , vol.19 , Issue.11 , pp. 1288-1293
    • Chen, P.Y.1    Manninga, H.2    Slanchev, K.3
  • 29
    • 33846527241 scopus 로고    scopus 로고
    • Distinct populations of primary and secondary effectors during RNAi in C. elegans
    • Pak J., Fire A., Distinct populations of primary and secondary effectors during RNAi in C. elegans Science 2007 315 5809 241 244
    • (2007) Science , vol.315 , Issue.5809 , pp. 241-244
    • Pak, J.1    Fire, A.2
  • 32
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • Ambros V., Bartel B., Bartel D. P., A uniform system for microRNA annotation RNA 2003 9 3 277 279
    • (2003) RNA , vol.9 , Issue.3 , pp. 277-279
    • Ambros, V.1    Bartel, B.2    Bartel, D.P.3
  • 33
    • 53649109953 scopus 로고    scopus 로고
    • Small RNA regulation of ovule development in the cotton plant, G. hirsutum L.
    • Abdurakhmonov I. Y., Devor E. J., Buriev Z. T., Small RNA regulation of ovule development in the cotton plant, G. hirsutum L. BMC Plant Biology 2008 8, article 93 1 12
    • (2008) BMC Plant Biology , vol.893 , pp. 1-12
    • Abdurakhmonov, I.Y.1    Devor, E.J.2    Buriev, Z.T.3
  • 34
    • 0034130561 scopus 로고    scopus 로고
    • Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
    • Brenner S., Johnson M., Bridgham J., Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays Nature Biotechnology 2000 18 6 630 634
    • (2000) Nature Biotechnology , vol.18 , Issue.6 , pp. 630-634
    • Brenner, S.1    Johnson, M.2    Bridgham, J.3
  • 35
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M., Egholm M., Altman W. E., Genome sequencing in microfabricated high-density picolitre reactors Nature 2005 437 7057 376 380
    • (2005) Nature , vol.437 , Issue.7057 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 36
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis E. R., The impact of next-generation sequencing technology on genetics Trends in Genetics 2008 24 3 133 141
    • (2008) Trends in Genetics , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 37
    • 36148937913 scopus 로고    scopus 로고
    • A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
    • Parameswaran P., Jalili R., Tao L., A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing Nucleic Acids Research 2007 35 19 e130
    • (2007) Nucleic Acids Research , vol.35 , Issue.19 , pp. 130
    • Parameswaran, P.1    Jalili, R.2    Tao, L.3
  • 38
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M., Walker J. J., Harris J. K., Gold N. J., Knight R., Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex Nature Methods 2008 5 3 235 237
    • (2008) Nature Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 39
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby J. G., Jan C., Player C., Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans Cell 2006 127 6 1193 1207
    • (2006) Cell , vol.127 , Issue.6 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3
  • 40
    • 53649100100 scopus 로고    scopus 로고
    • The development and impact of 454 sequencing
    • Rothberg J. M., Leamon J. H., The development and impact of 454 sequencing Nature Biotechnology 2008 26 10 1117 1124
    • (2008) Nature Biotechnology , vol.26 , Issue.10 , pp. 1117-1124
    • Rothberg, J.M.1    Leamon, J.H.2
  • 41
    • 45849130924 scopus 로고    scopus 로고
    • Emerging DNA sequencing technologies for human genomic medicine
    • Strausberg R. L., Levy S., Rogers Y.-H., Emerging DNA sequencing technologies for human genomic medicine Drug Discovery Today 2008 13 13-14 569 577
    • (2008) Drug Discovery Today , vol.13 , Issue.1314 , pp. 569-577
    • Strausberg, R.L.1    Levy, S.2    Rogers, Y.-H.3
  • 42
    • 35548973892 scopus 로고    scopus 로고
    • DNA sequencing: bench to bedside and beyond
    • Hutchinson C. A., DNA sequencing: bench to bedside and beyond Nucleic Acids Research 2007 35 18 6227 6237
    • (2007) Nucleic Acids Research , vol.35 , Issue.18 , pp. 6227-6237
    • Hutchinson, C.A.1
  • 43
    • 38449101120 scopus 로고    scopus 로고
    • Integration of biological networks and gene expression data using Cytoscape
    • Cline M. S., Smoot M., Cerami E., Integration of biological networks and gene expression data using Cytoscape Nature Protocols 2007 2 10 2366 2382
    • (2007) Nature Protocols , vol.2 , Issue.10 , pp. 2366-2382
    • Cline, M.S.1    Smoot, M.2    Cerami, E.3
  • 44
    • 58249138817 scopus 로고    scopus 로고
    • Generations of sequencing technologies
    • Pettersson E., Lundeberg J., Ahmadian A., Generations of sequencing technologies Genomics 2009 93 2 105 111
    • (2009) Genomics , vol.93 , Issue.2 , pp. 105-111
    • Pettersson, E.1    Lundeberg, J.2    Ahmadian, A.3
  • 45
    • 24644462173 scopus 로고    scopus 로고
    • Accurate multiplex polony sequencing of an evolved bacterial genome
    • Shendure J., Porreca G. J., Reppas N. B., Accurate multiplex polony sequencing of an evolved bacterial genome Science 2005 309 5741 1728 1732
    • (2005) Science , vol.309 , Issue.5741 , pp. 1728-1732
    • Shendure, J.1    Porreca, G.J.2    Reppas, N.B.3
  • 46
    • 24644490196 scopus 로고    scopus 로고
    • Elucidation of the small RNA component of the transcriptome
    • Lu C., Tej S. S., Luo S., Haudenschild C. D., Meyers B. C., Green P. J., Elucidation of the small RNA component of the transcriptome Science 2005 309 5740 1567 1569
    • (2005) Science , vol.309 , Issue.5740 , pp. 1567-1569
    • Lu, C.1    Tej, S.S.2    Luo, S.3    Haudenschild, C.D.4    Meyers, B.C.5    Green, P.J.6
  • 47
    • 33749404806 scopus 로고    scopus 로고
    • MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    • Lu C., Kulkarni K., Souret F. F., MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant Genome Research 2006 16 10 1276 1288
    • (2006) Genome Research , vol.16 , Issue.10 , pp. 1276-1288
    • Lu, C.1    Kulkarni, K.2    Souret, F.F.3
  • 48
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson I. R., Zhang X., Lu C., Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning Nature Genetics 2006 38 6 721 725
    • (2006) Nature Genetics , vol.38 , Issue.6 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3
  • 50
    • 42149157716 scopus 로고    scopus 로고
    • Identification of novel and candidate miRNAs in rice by high throughput sequencing
    • Sunkar R., Zhou X., Zheng Y., Zhang W., Zhu J.-K., Identification of novel and candidate miRNAs in rice by high throughput sequencing BMC Plant Biology 2008 8, article 25 1 17
    • (2008) BMC Plant Biology , vol.825 , pp. 1-17
    • Sunkar, R.1    Zhou, X.2    Zheng, Y.3    Zhang, W.4    Zhu, J.-K.5
  • 51
    • 50649110065 scopus 로고    scopus 로고
    • A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    • Zhu Q.-H., Spriggs A., Matthew L., A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains Genome Research 2008 18 9 1456 1465
    • (2008) Genome Research , vol.18 , Issue.9 , pp. 1456-1465
    • Zhu, Q.-H.1    Spriggs, A.2    Matthew, L.3
  • 52
    • 60349102352 scopus 로고    scopus 로고
    • Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing
    • Chellappan P., Jin H., Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing Methods in Molecular Biology 2009 495 121 132
    • (2009) Methods in Molecular Biology , vol.495 , pp. 121-132
    • Chellappan, P.1    Jin, H.2
  • 53
    • 39349094007 scopus 로고    scopus 로고
    • In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    • Devor E. J., Samollow P. B., In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica Journal of Heredity 2008 99 1 66 72
    • (2008) Journal of Heredity , vol.99 , Issue.1 , pp. 66-72
    • Devor, E.J.1    Samollow, P.B.2
  • 55
    • 36148975768 scopus 로고    scopus 로고
    • Polyploidy and the evolutionary history of cotton
    • Wendel J. F., Cronn R. C., Polyploidy and the evolutionary history of cotton Advances in Agronomy 2003 78 139 186
    • (2003) Advances in Agronomy , vol.78 , pp. 139-186
    • Wendel, J.F.1    Cronn, R.C.2
  • 58
    • 37249036997 scopus 로고    scopus 로고
    • Toward sequencing cotton (Gossypium) genomes
    • Chen Z. J., Scheffler B. E., Dennis E., Toward sequencing cotton (Gossypium) genomes Plant Physiology 2007 145 4 1303 1310
    • (2007) Plant Physiology , vol.145 , Issue.4 , pp. 1303-1310
    • Chen, Z.J.1    Scheffler, B.E.2    Dennis, E.3
  • 59
    • 85047683189 scopus 로고    scopus 로고
    • Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis
    • Kim H. J., Triplett B. A., Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis Plant Physiology 2001 127 4 1361 1366
    • (2001) Plant Physiology , vol.127 , Issue.4 , pp. 1361-1366
    • Kim, H.J.1    Triplett, B.A.2
  • 61
    • 34247624029 scopus 로고    scopus 로고
    • Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags
    • Qiu C. X., Xie F. L., Zhu Y. Y., Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags Gene 2007 395 1-2 49 61
    • (2007) Gene , vol.395 , Issue.12 , pp. 49-61
    • Qiu, C.X.1    Xie, F.L.2    Zhu, Y.Y.3
  • 62
    • 34250818778 scopus 로고    scopus 로고
    • Identification of cotton microRNAs and their targets
    • Zhang B., Wang Q., Wang K., Identification of cotton microRNAs and their targets Gene 2007 397 1-2 26 37
    • (2007) Gene , vol.397 , Issue.12 , pp. 26-37
    • Zhang, B.1    Wang, Q.2    Wang, K.3
  • 65
    • 22144457368 scopus 로고    scopus 로고
    • Antiquity of microRNAs and their targets in land plants
    • Axtell M. J., Bartel D. P., Antiquity of microRNAs and their targets in land plants The Plant Cell 2005 17 6 1658 1673
    • (2005) The Plant Cell , vol.17 , Issue.6 , pp. 1658-1673
    • Axtell, M.J.1    Bartel, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.