-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros, V. 2004. The functions of animal microRNAs. Nature 431: 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
3
-
-
0037737975
-
MicroRNAs and other tiny endogenous RNAs in C. elegans
-
Ambros, V., Lee, R.C., Lavanway, A., Williams, P.T., and Jewell, D. 2003. MicroRNAs and other tiny endogenous RNAs in C. elegans. Curr. Biol. 13: 807-818.
-
(2003)
Curr. Biol.
, vol.13
, pp. 807-818
-
-
Ambros, V.1
Lee, R.C.2
Lavanway, A.3
Williams, P.T.4
Jewell, D.5
-
4
-
-
0041941514
-
The small RNA profile during Drosophila melanogaster development
-
Aravin, A.A., Lagos-Quintana, M., Yalcin, A., Zavolan, M., Marks, D., Snyder, B., Gaasterland, T., Meyer, J., and Tuschl, T. 2003. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5: 337-350.
-
(2003)
Dev. Cell
, vol.5
, pp. 337-350
-
-
Aravin, A.A.1
Lagos-Quintana, M.2
Yalcin, A.3
Zavolan, M.4
Marks, D.5
Snyder, B.6
Gaasterland, T.7
Meyer, J.8
Tuschl, T.9
-
5
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
6
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
Bartel, D.P. and Chen, C.Z. 2004. Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs. Nat. Rev. Genet. 5: 396-400.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.Z.2
-
7
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov, E., Guryev, V., van de Belt, J., Wienholds, E., Plasterk, R.H., and Cuppen, E. 2005. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120: 21-24.
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
Van De Belt, J.3
Wienholds, E.4
Plasterk, R.H.5
Cuppen, E.6
-
8
-
-
0242266620
-
Dicer is essential for mouse development
-
Bernstein, E., Kim, S.Y., Carmell, M.A., Murchison, E.P., Alcorn, H., Li, M.Z., Mills, A.A., Elledge, S.J., Anderson, K.V., and Hannon, G.J. 2003. Dicer is essential for mouse development. Nat. Genet. 35: 215-217.
-
(2003)
Nat. Genet.
, vol.35
, pp. 215-217
-
-
Bernstein, E.1
Kim, S.Y.2
Carmell, M.A.3
Murchison, E.P.4
Alcorn, H.5
Li, M.Z.6
Mills, A.A.7
Elledge, S.J.8
Anderson, K.V.9
Hannon, G.J.10
-
9
-
-
9144259164
-
Ensembl 2004
-
Birney, E., Andrews, D., Bevan, P., Caccamo, M., Cameron, G., Chen, Y., Clarke, L., Coates, G., Cox, T., Cuff, J., et al. 2004. Ensembl 2004. Nucleic Acids Res. 32: D468-D470.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Birney, E.1
Andrews, D.2
Bevan, P.3
Caccamo, M.4
Cameron, G.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cuff, J.10
-
10
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski, P. and Sacchi, N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156-159.
-
(1987)
Anal. Biochem.
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
11
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright, A.J., John, B., Gaul, U., Tuschl, T., Sander, C., and Marks, D. 2003. MicroRNA targets in Drosophila. Genome Biol. 5:RI: 1-14.
-
(2003)
Genome Biol.
, vol.5
, Issue.RI
, pp. 1-14
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.6
-
12
-
-
18244385475
-
MicroRNAs regulate brain morphogenesis in zebrafish
-
Giraldez, A.J., Cinalli, R.M., Glasner, M.E., Enright, A.J., Thomson, M.J., Baskerville, S., Hammond, S.M., Bartel, D.P., and Schier, A.F. 2005. MicroRNAs regulate brain morphogenesis in zebrafish. Science 308: 833-838.
-
(2005)
Science
, vol.308
, pp. 833-838
-
-
Giraldez, A.J.1
Cinalli, R.M.2
Glasner, M.E.3
Enright, A.J.4
Thomson, M.J.5
Baskerville, S.6
Hammond, S.M.7
Bartel, D.P.8
Schier, A.F.9
-
13
-
-
0036731971
-
Headwaters of the zebrafish-Emergence of a new model vertebrate
-
Grunwald, D.J. and Eisen, J.S. 2002. Headwaters of the zebrafish-Emergence of a new model vertebrate. Nat. Rev. Genet. 3: 717-724.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 717-724
-
-
Grunwald, D.J.1
Eisen, J.S.2
-
14
-
-
3042767202
-
MicroRNAs: Small RNAs with a big role in gene regulation
-
He, L. and Hannon, G.J. 2004. MicroRNAs: Small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5: 522-531.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
15
-
-
1242283844
-
Structure and mechanism of RNA ligase
-
Ho, C.K., Wang, L.K., Lima, C.D., and Shuman, S. 2004. Structure and mechanism of RNA ligase. Structure (Camb.) 12: 327-339.
-
(2004)
Structure (Camb.)
, vol.12
, pp. 327-339
-
-
Ho, C.K.1
Wang, L.K.2
Lima, C.D.3
Shuman, S.4
-
16
-
-
4344677175
-
Common logic of transcription factor and microRNA action
-
Hobert, O. 2004. Common logic of transcription factor and microRNA action. Trends Biochem. Sci. 29: 462-468.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 462-468
-
-
Hobert, O.1
-
17
-
-
0042442335
-
Embryonic stem cell-specific MicroRNAs
-
Houbaviy, H.B., Murray, M.F., and Sharp, P.A. 2003. Embryonic stem cell-specific MicroRNAs. Dev. Cell 5: 351-358.
-
(2003)
Dev. Cell
, vol.5
, pp. 351-358
-
-
Houbaviy, H.B.1
Murray, M.F.2
Sharp, P.A.3
-
18
-
-
22744434724
-
Human miRNA targets
-
John, B., Enright, A.J., Aravin, A., Tuschl, T., Sander, C., and Marks, D. 2004. Human miRNA targets. PLoS Biol. 2: e363.
-
(2004)
PLoS Biol.
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.6
-
19
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk, A., Keefe, D., Smedley, D., London, D., Spooner, W., Melsopp, C., Hammond, M., Rocca-Serra, P., Cox, T., and Birney, E. 2004. EnsMart: A generic system for fast and flexible access to biological data. Genome Res. 14: 160-169.
-
(2004)
Genome Res.
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
Birney, E.10
-
20
-
-
0029045033
-
Stages of embryonic development of the zebrafish
-
Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B., and Schilling T.F. 1995. Stages of embryonic development of the zebrafish. Dev. Dyn. 203: 253-310.
-
(1995)
Dev. Dyn.
, vol.203
, pp. 253-310
-
-
Kimmel, C.B.1
Ballard, W.W.2
Kimmel, S.R.3
Ullmann, B.4
Schilling, T.F.5
-
21
-
-
20944450160
-
Combinatorial microRNA target prediction
-
Krek, A., Grün, D., Poy, M.N., Wolf, R., Rosenberg, L., Epstein, E.J., MacMenamin, P., da Piedade, I., Gunsalus, K.C., Stoffel, M., et al. 2005. Combinatorial microRNA target prediction. Nat. Genet. 37: 495-500.
-
(2005)
Nat. Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grün, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
Da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
22
-
-
0141631876
-
A microRNA array reveals extensive regulation of microRNAs during brain development
-
Krichevsky, A.M., King, K.S., Donahue, C.P., Khrapko, K., and Kosik, K.S. 2003. A microRNA array reveals extensive regulation of microRNAs during brain development. RNA 9: 1274-1281.
-
(2003)
RNA
, vol.9
, pp. 1274-1281
-
-
Krichevsky, A.M.1
King, K.S.2
Donahue, C.P.3
Khrapko, K.4
Kosik, K.S.5
-
23
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana, M., Rauhut, R., Lendeckel, W., and Tuschl, T. 2001. Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
24
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
Lagos-Quintana, M., Rauhut, R., Yalcin, A., Meyer, J., Lendeckel, W., and Tuschl, T. 2002. Identification of tissue-specific microRNAs from mouse. Curr. Biol. 12: 735-739.
-
(2002)
Curr. Biol.
, vol.12
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
25
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
Lai, E.C., Tomancak, P., Williams, R.W., and Rubin, G.M. 2003. Computational identification of Drosophila microRNA genes. Genome Biol. 4: R42.
-
(2003)
Genome Biol.
, vol.4
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
Rubin, G.M.4
-
26
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau, N.C., Lim, L.P., Weinstein, E.G., and Bartel, D.P. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
27
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee, R.C. and Ambros, V. 2001. An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
28
-
-
16344366331
-
Profile-based detection of microRNA precursors in animal genomes
-
Legendre, M., Lambert, A., and Gautheret, D. 2005. Profile-based detection of microRNA precursors in animal genomes. Bioinformatics 21: 841-845.
-
(2005)
Bioinformatics
, vol.21
, pp. 841-845
-
-
Legendre, M.1
Lambert, A.2
Gautheret, D.3
-
29
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P., Shih, I., Jones-Rhoades, M.W., Bartel, D.P., and Burge, C.B. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
30
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
31
-
-
0037423845
-
Vertebrate microRNA genes
-
Lim, L.P., Glasner, M.E., Yekta, S., Burge, C.B., and Bartel, D.P. 2003a. Vertebrate microRNA genes. Science 299: 1540.
-
(2003)
Science
, vol.299
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
32
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim, L.P., Lau, N.C., Weinstein, E.G., Abdelhakim, A., Yekta, S., Rhoades, M.W., Burge, C.B., and Bartel, D.P. 2003b. The microRNAs of Caenorhabditis elegans. Genes & Dev. 17: 991-1008.
-
(2003)
Genes & Dev.
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
33
-
-
4644312235
-
The role of RNA interference in heterochromatic silencing
-
Lippman, Z. and Martienssen, R. 2004. The role of RNA interference in heterochromatic silencing. Nature 431: 364-370.
-
(2004)
Nature
, vol.431
, pp. 364-370
-
-
Lippman, Z.1
Martienssen, R.2
-
34
-
-
10344236467
-
Inhibition of Jagged-mediated Notch signaling disrupts zebrafish biliary development and generates multiorgan defects compatible with an Alagille syndrome phenocopy
-
Lorent, K., Yeo, S.Y., Oda, T., Chandrasekharappa, S., Chitnis, A., Matthews, R.P., and Pack, M. 2004. Inhibition of Jagged-mediated Notch signaling disrupts zebrafish biliary development and generates multiorgan defects compatible with an Alagille syndrome phenocopy. Development 131: 5753-5766.
-
(2004)
Development
, vol.131
, pp. 5753-5766
-
-
Lorent, K.1
Yeo, S.Y.2
Oda, T.3
Chandrasekharappa, S.4
Chitnis, A.5
Matthews, R.P.6
Pack, M.7
-
35
-
-
6944246368
-
MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression
-
Mansfield, J.H., Harfe, B.D., Nissen, R., Obenauer, J., Srineel, J., Chaudhuri, A., Farzan-Kashani, R., Zuker, M., Pasquinelli, A.E., Ruvkun, G., et al. 2004. MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression. Nat. Genet. 36: 1079-1083.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1079-1083
-
-
Mansfield, J.H.1
Harfe, B.D.2
Nissen, R.3
Obenauer, J.4
Srineel, J.5
Chaudhuri, A.6
Farzan-Kashani, R.7
Zuker, M.8
Pasquinelli, A.E.9
Ruvkun, G.10
-
36
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
Meister, G., Landthaler, M., Patkaniowska, A., Dorsett, Y., Teng, G., and Tuschl, T. 2004. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol. Cell 15: 185-197.
-
(2004)
Mol. Cell
, vol.15
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
37
-
-
0041506564
-
Cloning of small RNA molecules
-
(eds. F.M. Ausubel et al.), John Wiley and Sons, New York.
-
Pfeffer, S., Lagos-Quintana, M., and Tuschl, T. 2003. Cloning of small RNA molecules. In Current protocols in molecular biology (eds. F.M. Ausubel et al.), pp. 26.4.1-26.4.16. John Wiley and Sons, New York.
-
(2003)
Current Protocols in Molecular Biology
-
-
Pfeffer, S.1
Lagos-Quintana, M.2
Tuschl, T.3
-
38
-
-
2342420041
-
Identification of virus-encoded microRNAs
-
Pfeffer, S., Zavolan, M., Grasser, F.A., Chien, M., Russo, J.J., Ju, J., John, B., Enright, A.J., Marks, D., Sander, C., et al. 2004. Identification of virus-encoded microRNAs. Science 304: 734-736.
-
(2004)
Science
, vol.304
, pp. 734-736
-
-
Pfeffer, S.1
Zavolan, M.2
Grasser, F.A.3
Chien, M.4
Russo, J.J.5
Ju, J.6
John, B.7
Enright, A.J.8
Marks, D.9
Sander, C.10
-
39
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky, N. and Socci, N.D. 2004. Computational identification of microRNA targets. Dev. Biol. 267: 529-535.
-
(2004)
Dev. Biol.
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
40
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez, A., Griffiths-Jones, S., Ashurst, J.L., and Bradley, A. 2004. Identification of mammalian microRNA host genes and transcription units. Genome Res. 14: 1902-1910.
-
(2004)
Genome Res.
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
-
41
-
-
0345255908
-
Nodal signaling in vertebrate development
-
Schier, A.F. 2003. Nodal signaling in vertebrate development. Annu. Rev. Cell Dev. Biol. 19: 589-621.
-
(2003)
Annu. Rev. Cell Dev. Biol.
, vol.19
, pp. 589-621
-
-
Schier, A.F.1
-
42
-
-
0037790717
-
Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
-
Sempere, L.F., Sokol, N.S., Dubrovsky, E.B., Berger, E.M., and Ambros, V. 2003. Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity. Dev. Biol. 259: 9-18.
-
(2003)
Dev. Biol.
, vol.259
, pp. 9-18
-
-
Sempere, L.F.1
Sokol, N.S.2
Dubrovsky, E.B.3
Berger, E.M.4
Ambros, V.5
-
43
-
-
2942534403
-
Human embryonic stem cells express a unique set of microRNAs
-
Suh, M.R., Lee, Y., Kim, J.Y., Kim, S.K., Moon, S.H., Lee, J.Y., Cha, K.Y., Chung, H.M., Yoon, H.S., Moon, S.Y., et al. 2004. Human embryonic stem cells express a unique set of microRNAs. Dev. Biol. 270: 488-498.
-
(2004)
Dev. Biol.
, vol.270
, pp. 488-498
-
-
Suh, M.R.1
Lee, Y.2
Kim, J.Y.3
Kim, S.K.4
Moon, S.H.5
Lee, J.Y.6
Cha, K.Y.7
Chung, H.M.8
Yoon, H.S.9
Moon, S.Y.10
-
44
-
-
11844283981
-
Stage-specific expression of microRNAs during Xenopus development
-
Watanabe, T., Takeda, A., Mise, K., Okuno, T., Suzuki, T., Minami, N., and Imai, H. 2005. Stage-specific expression of microRNAs during Xenopus development. FEBS Lett. 579: 318-324.
-
(2005)
FEBS Lett.
, vol.579
, pp. 318-324
-
-
Watanabe, T.1
Takeda, A.2
Mise, K.3
Okuno, T.4
Suzuki, T.5
Minami, N.6
Imai, H.7
-
46
-
-
0242266618
-
The microRNA-producing enzyme Dicer1 is essential for zebrafish development
-
Wienholds, E., Koudijs, M.J., Van Eeden, F.J., Cuppen, E., and Plasterk, R.H. 2003. The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nat. Genet. 35: 217-218.
-
(2003)
Nat. Genet.
, vol.35
, pp. 217-218
-
-
Wienholds, E.1
Koudijs, M.J.2
Van Eeden, F.J.3
Cuppen, E.4
Plasterk, R.H.5
|