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Volumn 64, Issue 19, 2009, Pages 4178-4185

Improving prediction capabilities of complex dynamic models via parameter selection and estimation

Author keywords

Mathematical modeling; Nonlinear dynamics; Parameter identification; Parameter selection; Sensitivity analysis

Indexed keywords

CHEMICAL REACTION NETWORKS; COMPLEX DYNAMICS; DETAILED MODELS; EXPERIMENTAL DATA; FORWARD SELECTION; LEVEL OF DETAIL; MATHEMATICAL MODELING; MEAN SQUARED ERROR; NONLINEAR DYNAMICS; ORTHOGONALIZATION; OVERFITTING; PARAMETER IDENTIFICATION; PARAMETER SELECTION; PREDICTION CAPABILITY; QUANTITATIVE DATA; SIGNAL TRANSDUCTION PATHWAYS; SQUARED PREDICTION ERRORS;

EID: 68049127780     PISSN: 00092509     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ces.2009.06.057     Document Type: Article
Times cited : (32)

References (30)
  • 3
    • 41849104688 scopus 로고    scopus 로고
    • Hybrid optimization method with general switching strategy for parameter estimation
    • Balsa-Canto E., Peifer M., Banga J.R., Timmer J., and Fleck C. Hybrid optimization method with general switching strategy for parameter estimation. BMC Systems Biology 2 (2008) 26
    • (2008) BMC Systems Biology , vol.2 , pp. 26
    • Balsa-Canto, E.1    Peifer, M.2    Banga, J.R.3    Timmer, J.4    Fleck, C.5
  • 4
    • 0036753969 scopus 로고    scopus 로고
    • Practical identifiability of ASM2d parameters-systematic selection and tuning of parameter subsets
    • Brun R., Kuhni M., Siegrist H., Gujer W., and Reichert P. Practical identifiability of ASM2d parameters-systematic selection and tuning of parameter subsets. Water Research 36 (2002) 4113-4127
    • (2002) Water Research , vol.36 , pp. 4113-4127
    • Brun, R.1    Kuhni, M.2    Siegrist, H.3    Gujer, W.4    Reichert, P.5
  • 5
    • 35948959766 scopus 로고    scopus 로고
    • Parameter set selection for estimation of nonlinear dynamic systems
    • Chu Y., and Hahn J. Parameter set selection for estimation of nonlinear dynamic systems. A.I.Ch.E. Journal 53 (2007) 2858-2870
    • (2007) A.I.Ch.E. Journal , vol.53 , pp. 2858-2870
    • Chu, Y.1    Hahn, J.2
  • 6
    • 52649139002 scopus 로고    scopus 로고
    • Integrating parameter selection with experimental design under uncertainty for nonlinear dynamic systems
    • Chu Y., and Hahn J. Integrating parameter selection with experimental design under uncertainty for nonlinear dynamic systems. A.I.Ch.E. Journal 54 (2008) 2310-2320
    • (2008) A.I.Ch.E. Journal , vol.54 , pp. 2310-2320
    • Chu, Y.1    Hahn, J.2
  • 7
  • 8
    • 57349131865 scopus 로고    scopus 로고
    • Control of translation initiation: a model-based analysis from limited experimental data
    • Dimelow R.J., and Wilkinson S.J. Control of translation initiation: a model-based analysis from limited experimental data. Journal of the Royal Society Interface 6 (2009) 51-61
    • (2009) Journal of the Royal Society Interface , vol.6 , pp. 51-61
    • Dimelow, R.J.1    Wilkinson, S.J.2
  • 9
    • 25444510601 scopus 로고    scopus 로고
    • Iterative approach to model identification of biological networks
    • Gadkar K.G., Gunawan R., and Doyle F.J. Iterative approach to model identification of biological networks. BMC Bioinformatics 6 (2005) 155
    • (2005) BMC Bioinformatics , vol.6 , pp. 155
    • Gadkar, K.G.1    Gunawan, R.2    Doyle, F.J.3
  • 10
    • 21644489637 scopus 로고    scopus 로고
    • Model identification of signal transduction networks from data using a state regulator problem
    • Gadkar K.G., Varner J., and Doyle F.J. Model identification of signal transduction networks from data using a state regulator problem. Systems Biology 2 (2005) 17-30
    • (2005) Systems Biology , vol.2 , pp. 17-30
    • Gadkar, K.G.1    Varner, J.2    Doyle, F.J.3
  • 11
    • 33947647274 scopus 로고    scopus 로고
    • Efficient algorithms for ordinary differential equation model identification of biological systems
    • Gennemark P., and Wedelin D. Efficient algorithms for ordinary differential equation model identification of biological systems. IET Systems Biology 1 (2007) 120-129
    • (2007) IET Systems Biology , vol.1 , pp. 120-129
    • Gennemark, P.1    Wedelin, D.2
  • 16
    • 58249092600 scopus 로고    scopus 로고
    • Identifiability and estimability study for a dynamic solid oxide fuel cell model
    • Jayasankar B.R., Ben-Zvi A., and Huang B. Identifiability and estimability study for a dynamic solid oxide fuel cell model. Computers & Chemical Engineering 33 (2009) 484-492
    • (2009) Computers & Chemical Engineering , vol.33 , pp. 484-492
    • Jayasankar, B.R.1    Ben-Zvi, A.2    Huang, B.3
  • 17
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • Kitano H. Systems biology: a brief overview. Science 295 (2002) 1662-1664
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 19
    • 37649008768 scopus 로고    scopus 로고
    • Parameter ranking by orthogonalization-applied to nonlinear mechanistic models
    • Lund B.F., and Foss B.A. Parameter ranking by orthogonalization-applied to nonlinear mechanistic models. Automatica 44 (2008) 278-281
    • (2008) Automatica , vol.44 , pp. 278-281
    • Lund, B.F.1    Foss, B.A.2
  • 20
    • 0032406131 scopus 로고    scopus 로고
    • Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation
    • Mendes P., and Kell D.B. Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 14 (1998) 869-883
    • (1998) Bioinformatics , vol.14 , pp. 869-883
    • Mendes, P.1    Kell, D.B.2
  • 21
    • 41049095598 scopus 로고    scopus 로고
    • Diverse metabolic model parameters generate similar methionine cycle dynamics
    • Piazza M., Feng X.J., Rabinowitz J.D., and Rabitz H. Diverse metabolic model parameters generate similar methionine cycle dynamics. Journal of Theoretical Biology 251 (2008) 628-639
    • (2008) Journal of Theoretical Biology , vol.251 , pp. 628-639
    • Piazza, M.1    Feng, X.J.2    Rabinowitz, J.D.3    Rabitz, H.4
  • 23
    • 32044474451 scopus 로고    scopus 로고
    • A hybrid approach for efficient and robust parameter estimation in biochemical pathways
    • Rodriguez-Fernandez M., Mendes P., and Banga J.R. A hybrid approach for efficient and robust parameter estimation in biochemical pathways. Biosystems 83 (2006) 248-265
    • (2006) Biosystems , vol.83 , pp. 248-265
    • Rodriguez-Fernandez, M.1    Mendes, P.2    Banga, J.R.3
  • 24
    • 0036212767 scopus 로고    scopus 로고
    • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
    • Schoeberl B., Eichler-Jonsson C., Gilles E.D., and Muller G. Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature Biotechnology 20 (2002) 370-375
    • (2002) Nature Biotechnology , vol.20 , pp. 370-375
    • Schoeberl, B.1    Eichler-Jonsson, C.2    Gilles, E.D.3    Muller, G.4
  • 25
    • 33751543926 scopus 로고    scopus 로고
    • Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes
    • Singh A., Jayaraman A., and Hahn J. Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes. Biotechnology and Bioengineering 95 (2006) 850-862
    • (2006) Biotechnology and Bioengineering , vol.95 , pp. 850-862
    • Singh, A.1    Jayaraman, A.2    Hahn, J.3
  • 26
    • 0000481011 scopus 로고
    • Sensitivity analysis of complex kinetic systems-tools and applications
    • Turanyi T. Sensitivity analysis of complex kinetic systems-tools and applications. International Journal of Chemical Kinetics 5 (1990) 203-248
    • (1990) International Journal of Chemical Kinetics , vol.5 , pp. 203-248
    • Turanyi, T.1
  • 28
    • 37249067715 scopus 로고    scopus 로고
    • Proximate parameter tuning for biochemical networks with uncertain kinetic parameters
    • Wilkinson S.J., Benson N., and Kell D.B. Proximate parameter tuning for biochemical networks with uncertain kinetic parameters. Molecular Biosystems 4 (2008) 74-97
    • (2008) Molecular Biosystems , vol.4 , pp. 74-97
    • Wilkinson, S.J.1    Benson, N.2    Kell, D.B.3
  • 29
    • 0141606905 scopus 로고    scopus 로고
    • Modeling ethylene/butene copolymerization with multi-site catalysts: parameter estimability and experimental design
    • Yao K.Z., Shaw B.M., Kou B., McAuley K.B., and Bacon D.W. Modeling ethylene/butene copolymerization with multi-site catalysts: parameter estimability and experimental design. Polymer Reaction Engineering 11 (2003) 563-588
    • (2003) Polymer Reaction Engineering , vol.11 , pp. 563-588
    • Yao, K.Z.1    Shaw, B.M.2    Kou, B.3    McAuley, K.B.4    Bacon, D.W.5
  • 30
    • 33751101584 scopus 로고    scopus 로고
    • Insights into the behaviour of systems biology models from dynamic sensitivty and identifiability analysis: a case study of an NF-κB signalling pathway
    • Yue H., Brown M., Knowles J., Wang H., Broomhead D.S., and Kell D.B. Insights into the behaviour of systems biology models from dynamic sensitivty and identifiability analysis: a case study of an NF-κB signalling pathway. Molecular Biosystems 2 (2006) 640-649
    • (2006) Molecular Biosystems , vol.2 , pp. 640-649
    • Yue, H.1    Brown, M.2    Knowles, J.3    Wang, H.4    Broomhead, D.S.5    Kell, D.B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.