Polytene chromosome squash methods for studying transcription and epigenetic chromatin modification in Drosophila using antibodies

Methods

Volumn 48, Issue 4, 2009, Pages 387-397

  Johansen, Kristen M ^a   Cai, Weili ^a   Deng, Huai ^a   Bao, Xiaomin ^a   Zhang, Weiguo ^a   Girton, Jack ^a   Johansen, Jørgen ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Antibody labeling; Chromatin structure; Drosophila; Fixation conditions; Pol II; Polytene squash preparations; Transcription

Indexed keywords

ANTIBODY; HISTONE; POLYETHYLENE; TRANSCRIPTION FACTOR;

ANTIBODY LABELING; CHROMATIN STRUCTURE; CONTROLLED STUDY; DROSOPHILA; EPIGENETICS; HEAT SHOCK RESPONSE; IMMUNOHISTOCHEMISTRY; LARVA; NONHUMAN; PRIORITY JOURNAL; PROTEIN MODIFICATION; RELIABILITY; REVIEW; SALIVARY GLAND; TECHNIQUE; TRANSCRIPTION INITIATION;

ANIMALS; CHROMATIN; CHROMOSOMES; DROSOPHILA; EPIGENESIS, GENETIC; IMMUNOENZYME TECHNIQUES; TRANSCRIPTION, GENETIC;

EID: 67849109989     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2009.02.019     Document Type: Review

References (43)

1. Jamrich M., Haars R., Wulf E., and Bautz F.A. Chromosoma 64 (1977) 319-326
2. Sass H., and Bautz E.K. Chromosoma 85 (1982) 633-642
3. Weeks J.R., Hardin S.E., Shen J., Lee J.M., and Greenleaf A.M. Genes Dev. 7 (1993) 2329-2344
4. Kaplan C.D., Morris J.R., Wu C., and Winston F. Genes Dev. 14 (2000) 2623-2634
5. Lis J.T., Mason P., Peng J., Price D.H., and Werner J. Genes Dev. 14 (2000) 792-803
6. Lindquist S. Annu. Rev. Biochem. 55 (1986) 1151-1191
7. Ritossa F. Exp. Cell Res. 35 (1964) 601-607
8. Ashburner M., Chihara C., Meltzer P., and Richards G. Cold Spring Harb. Symp. Quant. Biol. 38 (1974) 655-662
9. Ashburner M., and Bonner J.J. Cell 17 (1979) 241-254
10. Winegarden N.A., Wong K.S., Sopta M., and Westwood J.T. J. Biol. Chem. 271 (1996) 26971-26980
11. Korge G., Heide I., Schnert M., and Hofmann A. Dev. Biol. 138 (1990) 324-337
12. Petesch S.J., and Lis J.T. Cell 134 (2008) 74-84
13. Berger S. Nature 447 (2007) 407-412
14. Suganuma T., and Workman J.L. Cell 135 (2008) 604-607
15. J.R. Baker, in: Mellanby, K. (Ed.) Methuen's Monographs on Biological Subjects, John Wiley and Sons, New York, 1933, pp. 52-54.
16. Pearse A.G.E. Histochemistry, Theoretical and Applied (1980), Churchill, Livinstone Edinburgh
17. Horobin R.W. Histochemistry (1982), Gustav Fischer Verlag, New York, NY
18. Humason G.L. Animal Tissue Techniques (1997), W. H. Freeman and Companty, San Francisco, CA
19. Foster C.S., Gosden C.M., and Ke Y.Q. Nat. Clin. Pract. Urol. 3 (2006) 268-278
20. LaCour L.F. Stain Technol. 16 (1941) 169-173
21. Dick C., and Johns E.W. Exp. Cell Res. 51 (1968) 626-632
22. Nicoletti J. Dros. Inf. Serv. 33 (1959) 181-182
23. Tonzetich J. Meth. Mol. Biol. 247 (2004) 249-256
24. Silver L.M., and Elgin S.C.R. Proc. Natl. Acad. Sci. USA 73 (1976) 423-427
25. Wang Y., Zhang W., Jin Y., Johansen J., and Johansen K.M. Cell 105 (2001) 433-443
26. Cai W., Bao X., Deng H., Jin Y., Girton J., Johansen J., and Johansen K.M. Development 135 (2008) 2917-2925
27. Plagens U., Greenleaf A.L., and Bautz E.K. Chromosoma 59 (1976) 157-165
28. Greenleaf A.L., Plagens U., Jamrich M., and Bautz E.K. Chromosoma 65 (1978) 127-136
29. B.E. Schwartz, J.K. Werner, J.T. Lis, Methods Enzymol. 376 (2004) 393-404.
30. Mirault M.E., Goldschmidt-Clermont M., Moran L., Arrigo A.P., and Tissieres A. Cold Spring Harb. Symp. Quant. Biol. 42 (1978) 819-827
31. O'Brien T., and Lis J.T. Mol. Cell. Biol. 13 (1993) 3456-3463
32. Zhang J., and Corden J.L. J. Biol. Chem. 266 (1991) 2290-2296
33. Boehm A.K., Saunders A., Werner J., and Lis J.T. Mol. Cell Biol. 23 (2003) 7628-7637
34. Andrulis E.D., Guzman E., Doring P., Werner J., and Lis J.T. Genes Dev. 14 (2000) 2635-2649
35. Park J.M., Werner J., Kim J.M., Lis J.T., and Kim Y.J. Mol. Cell 8 (2001) 9-19
36. Giardina C., Perez-Riba M., and Lis J.T. Genes Dev. 6 (1992) 2190-2200
37. O'Brien T., Wilkins R.C., Giardina C., and Lis J.T. Genes Dev. 9 (1995) 1098-1110
38. DiMario P., Rosby R., and Cui Z. Dros. Inf. Serv. 89 (2006) 115-118
39. Jin Y., Wang Y., Walker D.L., Dong H., Conley C., Johansen J., and Johansen K.M. Mol. Cell 4 (1999) 129-135
40. Yao J., Zobeck K.L., Lis J.T., and Webb W.W. Methods 45 (2008) 233-241
41. Novikov D.V., Kireev I., and Belmont A.S. Nat. Methods 4 (2007) 483-485
42. Roberts D.G. Drosophila: A Practical Approach (1998), IRL Press, Oxford, UK
43. Kelley R.L., Meller V.H., Gordadze P.R., Roman G., Davis R.L., and Kuroda M.I. Cell 98 (1999) 513-522