-
1
-
-
0032499868
-
Gene synthesis by a LCR-based approach: High-level production of leptin-L54 using synthetic gene in Escherichia coli
-
Au,L.C., Yang,F.Y., Yang,W.J., Lo,S.H. and Kao,C.F. (1998) Gene synthesis by a LCR-based approach: High-level production of leptin-L54 using synthetic gene in Escherichia coli. Biochem. Biophys. Res. Commun., 248, 200-203.
-
(1998)
Biochem. Biophys. Res. Commun
, vol.248
, pp. 200-203
-
-
Au, L.C.1
Yang, F.Y.2
Yang, W.J.3
Lo, S.H.4
Kao, C.F.5
-
2
-
-
0028784138
-
Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides
-
Stemmer,W.P., Crameri,A., Ha,K.D., Brennan,T.M. and Heyneker,H.L. (1995) Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene, 164, 49-53.
-
(1995)
Gene
, vol.164
, pp. 49-53
-
-
Stemmer, W.P.1
Crameri, A.2
Ha, K.D.3
Brennan, T.M.4
Heyneker, H.L.5
-
3
-
-
2142799564
-
Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: A novel method of primer design for high-fidelity assembly of longer gene sequences
-
Gao,X., Yo,P., Keith,A., Ragan,T.J. and Harris,T.K. (2003) Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: A novel method of primer design for high-fidelity assembly of longer gene sequences. Nucleic Acids Res., 31, e143.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Gao, X.1
Yo, P.2
Keith, A.3
Ragan, T.J.4
Harris, T.K.5
-
4
-
-
3042820410
-
A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences
-
Xiong,A.-S., Yao,Q.-H., Peng,R.-H., Li,X., Fan,H.-Q., Cheng,Z.-M. and Li,Y. (2004) A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences. Nucleic Acids Res., 32, e98.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Xiong, A.-S.1
Yao, Q.-H.2
Peng, R.-H.3
Li, X.4
Fan, H.-Q.5
Cheng, Z.-M.6
Li, Y.7
-
5
-
-
0026502381
-
Dual asymmetric PCR: One-step construction of synthetic genes
-
Sandhu,G.S, Aleff,R.A. and Kline,B.C. (1992) Dual asymmetric PCR: one-step construction of synthetic genes. Biotechniques, 12, 14-16.
-
(1992)
Biotechniques
, vol.12
, pp. 14-16
-
-
Sandhu, G.S.1
Aleff, R.A.2
Kline, B.C.3
-
6
-
-
17044455338
-
Two-step total gene synthesis method
-
Young,L. and Dong,Q. (2004) Two-step total gene synthesis method. Nucleic Acids Res., 32, e59.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Young, L.1
Dong, Q.2
-
7
-
-
0027050148
-
Recursive PCR: A novel technique for total gene synthesis
-
Prodromou,C. and Pearl,L. (1992) Recursive PCR: A novel technique for total gene synthesis. Protein Eng., 5, 827-829.
-
(1992)
Protein Eng
, vol.5
, pp. 827-829
-
-
Prodromou, C.1
Pearl, L.2
-
8
-
-
0037095730
-
DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis
-
Hoover,D.M. and Lubkowski,J. (2002) DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis. Nucleic Acids Res., 30, e43.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Hoover, D.M.1
Lubkowski, J.2
-
9
-
-
3242888495
-
Gene2oligo: Oligonucleotide design for in vitro gene synthesis
-
Rouillard,J.-M., Lee,W., Truan,G., Gao,X., Zhou,X. and Gulari,E. (2004) Gene2oligo: Oligonucleotide design for in vitro gene synthesis. Nucleic Acids Res., 32, W176-W180.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Rouillard, J.-M.1
Lee, W.2
Truan, G.3
Gao, X.4
Zhou, X.5
Gulari, E.6
-
10
-
-
23144436036
-
Assembly PCR oligo maker: A tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production
-
Rydzanicz,R., Zhao,X.S. and Johnson,P.E. (2005) Assembly PCR oligo maker: A tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production. Nucleic Acids Res., 33, W521-W525.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Rydzanicz, R.1
Zhao, X.S.2
Johnson, P.E.3
-
11
-
-
33645514473
-
GeneDesign: Rapid, automated design of multikilobase synthetic genes
-
Richardson,S.M., Wheelan,S.J., Yarrington,R.M. and Boeke,J.D. (2006) GeneDesign: Rapid, automated design of multikilobase synthetic genes. Genome Res., 16, 550-556.
-
(2006)
Genome Res
, vol.16
, pp. 550-556
-
-
Richardson, S.M.1
Wheelan, S.J.2
Yarrington, R.M.3
Boeke, J.D.4
-
12
-
-
19644370646
-
GeMS: An advanced software package for designing synthetic genes
-
Jayaraj,S., Reid,R. and Santi,D.V. (2005) GeMS: An advanced software package for designing synthetic genes. Nucleic Acids Res., 33 3011-3016.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3011-3016
-
-
Jayaraj, S.1
Reid, R.2
Santi, D.V.3
-
13
-
-
0037047595
-
Chemical synthesis of poliovirus cDNA: Generation of infectious virus in the absence of natural template
-
Cello,J., Paul,A.V. and Wimmer,E. (2002) Chemical synthesis of poliovirus cDNA: Generation of infectious virus in the absence of natural template. Science, 297, 1016-1018.
-
(2002)
Science
, vol.297
, pp. 1016-1018
-
-
Cello, J.1
Paul, A.V.2
Wimmer, E.3
-
14
-
-
0347364647
-
Generating a synthetic genome by whole genome assembly: ΦX174 bacteriophage from synthetic oligonucleotides
-
Smith,H.O., Hutchison,C.A., Pfannkoch,C. III and Venter,J.C. (2003) Generating a synthetic genome by whole genome assembly: ΦX174 bacteriophage from synthetic oligonucleotides. Proc. Natl Acad. Sci. USA, 100, 15440-15445.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15440-15445
-
-
Smith, H.O.1
Hutchison, C.A.2
Pfannkoch III, C.3
Venter, J.C.4
-
15
-
-
11144247743
-
Accurate multiplex gene synthesis from programmable DNA microchips
-
Tian,J., Gong,H., Sheng,H., Zhou,X., Gulari,E., Gao,X. and Church,G. (2004) Accurate multiplex gene synthesis from programmable DNA microchips. Nature, 432, 1050-1054.
-
(2004)
Nature
, vol.432
, pp. 1050-1054
-
-
Tian, J.1
Gong, H.2
Sheng, H.3
Zhou, X.4
Gulari, E.5
Gao, X.6
Church, G.7
-
16
-
-
17144450611
-
Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously
-
Shevchuk,N.A., Bryksin,A.V., Nusinovich,Y.A., Cabello,F.C., Sutherland,M. and Ladisch,S. (2004) Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously. Nucleic Acids Res., 32, e19.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Shevchuk, N.A.1
Bryksin, A.V.2
Nusinovich, Y.A.3
Cabello, F.C.4
Sutherland, M.5
Ladisch, S.6
-
17
-
-
37749030525
-
Gene synthesis by circular assembly amplification
-
Bang,D. and Church,G.M. (2008) Gene synthesis by circular assembly amplification. Nat. Methods, 5, 37-39.
-
(2008)
Nat. Methods
, vol.5
, pp. 37-39
-
-
Bang, D.1
Church, G.M.2
-
18
-
-
0344012538
-
Real-time polymerase chain reaction
-
Wilhelm,J. and Pingoud,A. (2003) Real-time polymerase chain reaction. ChemBioChem, 4, 1120-1128.
-
(2003)
ChemBioChem
, vol.4
, pp. 1120-1128
-
-
Wilhelm, J.1
Pingoud, A.2
-
20
-
-
43249095784
-
Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations
-
Owczarzy,R., Moreira,B.G., You,Y., Behlke,M.A. and Walder,J.A. (2008) Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Biochemistry, 47, 5336-5353.
-
(2008)
Biochemistry
, vol.47
, pp. 5336-5353
-
-
Owczarzy, R.1
Moreira, B.G.2
You, Y.3
Behlke, M.A.4
Walder, J.A.5
-
21
-
-
28644442082
-
Correcting errors in synthetic DNA through consensus shuffling
-
Binkowski,B.F., Richmond,K.E., Kaysen,J., Sussman,M.R. and Belshaw,P.J. (2005) Correcting errors in synthetic DNA through consensus shuffling. Nucleic Acids Res., 33, e55.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Binkowski, B.F.1
Richmond, K.E.2
Kaysen, J.3
Sussman, M.R.4
Belshaw, P.J.5
-
22
-
-
33749516823
-
S100A4 accelerates tumorigenesis and invasion of human prostate cancer through the transcriptional regulation of matrix metalloproteinase 9
-
Saleem,M., Kweon,M.-H., Johnson,J.J., Adhami,V.M., Elcheva,I., Khan,N., Hafeez,B.B., Bhat,K.M.R., Sarfaraz,S. et al. (2007) S100A4 accelerates tumorigenesis and invasion of human prostate cancer through the transcriptional regulation of matrix metalloproteinase 9. Proc. Natl Acad. Sci. USA, 103, 14825-14830.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 14825-14830
-
-
Saleem, M.1
Kweon, M.-H.2
Johnson, J.J.3
Adhami, V.M.4
Elcheva, I.5
Khan, N.6
Hafeez, B.B.7
Bhat, K.M.R.8
Sarfaraz, S.9
-
23
-
-
0031022694
-
Continuous fluorescence monitoring of rapid cycle DNA amplification
-
Wittwer,C.T., Herrmann,M.G., Moss,A.A. and Rasmussen,R.P. (1997) Continuous fluorescence monitoring of rapid cycle DNA amplification. BioTechniques, 22, 130-138.
-
(1997)
BioTechniques
, vol.22
, pp. 130-138
-
-
Wittwer, C.T.1
Herrmann, M.G.2
Moss, A.A.3
Rasmussen, R.P.4
-
24
-
-
65549149148
-
Experimental analysis of gene assembly with TopDown one-step real-time gene synthesis
-
Ye,H., Huang,M.C., Li,M.-H. and Ying,J.Y. (2009) Experimental analysis of gene assembly with TopDown one-step real-time gene synthesis. Nucleic Acids Res., 37, e51.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Ye, H.1
Huang, M.C.2
Li, M.-H.3
Ying, J.Y.4
-
25
-
-
0031568919
-
Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
-
Ririe,K.M., Rasmussen,R.P. and Wittwer,C.T. (1997) Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem., 245, 154-160.
-
(1997)
Anal. Biochem
, vol.245
, pp. 154-160
-
-
Ririe, K.M.1
Rasmussen, R.P.2
Wittwer, C.T.3
-
26
-
-
39449112551
-
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
-
Gibson,D.G., Benders,G.A., Andrews-Pfannkoch,C., Denisova,E.A., Baden-Tillson,H., Zaveri,J., Stockwell,T.B., Brownley,A., Thomas,D.W., Algire,M.A. et al. (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science, 319, 1215-1220.
-
(2008)
Science
, vol.319
, pp. 1215-1220
-
-
Gibson, D.G.1
Benders, G.A.2
Andrews-Pfannkoch, C.3
Denisova, E.A.4
Baden-Tillson, H.5
Zaveri, J.6
Stockwell, T.B.7
Brownley, A.8
Thomas, D.W.9
Algire, M.A.10
-
27
-
-
8144226497
-
Total synthesis of long DNA sequences: Synthesis of a contiguous 32-kb polyketide synthase gene cluster
-
Kodumal,S.J., Patel,K.G., Reid,R., Menzella,H.G., Welch,M. and Santi,D.V. (2004) Total synthesis of long DNA sequences: Synthesis of a contiguous 32-kb polyketide synthase gene cluster. Proc. Natl Acad. Sci. USA, 101, 15573-15578.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 15573-15578
-
-
Kodumal, S.J.1
Patel, K.G.2
Reid, R.3
Menzella, H.G.4
Welch, M.5
Santi, D.V.6
-
28
-
-
33847324003
-
Protein fabrication automation
-
Cox,J.C., Lape,J., Sayed,M.A. and Hellinga,H.W. (2007) Protein fabrication automation. Protein Sci., 16, 379-390.
-
(2007)
Protein Sci
, vol.16
, pp. 379-390
-
-
Cox, J.C.1
Lape, J.2
Sayed, M.A.3
Hellinga, H.W.4
-
29
-
-
34250307606
-
Parallel gene synthesis in a microfluidic device
-
Kong,D.S., Carr,P.A., Chen,L., Zhang,S. and Jacobson,J.M. (2007) Parallel gene synthesis in a microfluidic device. Nucleic Acids Res. 35, e61.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kong, D.S.1
Carr, P.A.2
Chen, L.3
Zhang, S.4
Jacobson, J.M.5
-
30
-
-
4644244121
-
Amplification and assembly of chip eluted DNA (AACED): A method for high throughput gene synthesis
-
Richmond,K.E., Li,M.-H., Rodesch,M.J., Patel,M., Lowe,A.M., Kim,C., Chu,L.L., Venkataramaian,N., Flickinger,S.F., Kaysen,J. et al. (2004) Amplification and assembly of chip eluted DNA (AACED): A method for high throughput gene synthesis. Nucleic Acids Res., 32, 5011-5018.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5011-5018
-
-
Richmond, K.E.1
Li, M.-H.2
Rodesch, M.J.3
Patel, M.4
Lowe, A.M.5
Kim, C.6
Chu, L.L.7
Venkataramaian, N.8
Flickinger, S.F.9
Kaysen, J.10
-
31
-
-
16544393254
-
Protein-mediated error correction for de novo DNA synthesis
-
Carr,P.A., Park,J.S., Lee,Y.J., Yu,T., Zhang,S. and Jacobson,J.M. (2004) Protein-mediated error correction for de novo DNA synthesis. Nucleic Acids Res., 32, e162.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Carr, P.A.1
Park, J.S.2
Lee, Y.J.3
Yu, T.4
Zhang, S.5
Jacobson, J.M.6
-
32
-
-
0031915891
-
Error analysis of chemically synthesized polynucleotides
-
Hecker,K.H. and Rill,R.L. (1998) Error analysis of chemically synthesized polynucleotides. BioTechniques, 24, 256-260.
-
(1998)
BioTechniques
, vol.24
, pp. 256-260
-
-
Hecker, K.H.1
Rill, R.L.2
-
33
-
-
43249106821
-
Recursive construction of perfect DNA molecules from imperfect oligonucleotides
-
Linshiz,G., Yehezkel,T.B., Kaplan,S., Gronau,I., Ravid,S., Adar,R. and Shapiro,E. (2008) Recursive construction of perfect DNA molecules from imperfect oligonucleotides. Mol. Syst. Biol., 4, 191.
-
(2008)
Mol. Syst. Biol
, vol.4
, pp. 191
-
-
Linshiz, G.1
Yehezkel, T.B.2
Kaplan, S.3
Gronau, I.4
Ravid, S.5
Adar, R.6
Shapiro, E.7
-
34
-
-
62749205090
-
Integrated two-step gene synthesis in a microfluidic device
-
Huang,M.C., Ye,H., Kuan,Y.K., Li,M.-H. and Ying,J.Y. (2009) Integrated two-step gene synthesis in a microfluidic device. Lab. Chip, 9 276-285.
-
(2009)
Lab. Chip
, vol.9
, pp. 276-285
-
-
Huang, M.C.1
Ye, H.2
Kuan, Y.K.3
Li, M.-H.4
Ying, J.Y.5
-
35
-
-
23144444226
-
JCat: A novel tool to adapt codon usage of a target gene to its potential expression host
-
Grote,A., Hiller,K., Scheer,M., Münch,R., Nörtemann,B., Hempel,D.C. and Jahn,D. (2005) JCat: A novel tool to adapt codon usage of a target gene to its potential expression host. Nucleic Acids Res. 33, W526-W531.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Grote, A.1
Hiller, K.2
Scheer, M.3
Münch, R.4
Nörtemann, B.5
Hempel, D.C.6
Jahn, D.7
-
36
-
-
34547579086
-
OPTIMIZER: A web server for optimizing the codon usage of DNA sequences
-
Puigbò,P., Guzmán,E., Romeu,A. and Garcia-Vallvé,S. (2007) OPTIMIZER: A web server for optimizing the codon usage of DNA sequences. Nucleic Acids Res., 35, W126-W131.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Puigbò, P.1
Guzmán, E.2
Romeu, A.3
Garcia-Vallvé, S.4
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