Identification of DNA-dependent protein kinase as a cofactor for the forkhead transcription factor FoxA2

Journal of Biological Chemistry

Volumn 284, Issue 30, 2009, Pages 19915-19926

  Nock, Adam ^a   Ascano, Janice M ^a   Jones, Tara ^a   Barrero, Maria J ^a,d   Sugiyama, Naoyuki ^b   Tomita, Masaru ^b   Ishihama, Yasushi ^b,c   Malik, Sohail ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

^b KEIO UNIVERSITY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^d Centre de Medicina Regenerativa de Barcelona   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AFFINITY PURIFICATION; ANIMAL DEVELOPMENT; APOLIPOPROTEIN A-I; CHROMATIN IMMUNOPRECIPITATION; COFACTOR; COFACTORS; DNA BINDING DOMAIN; DNA BINDING SITE; DNA-DEPENDENT PROTEIN KINASE; FORKHEAD TRANSCRIPTIONS; HEPATOCYTE; HIGH DENSITY LIPOPROTEIN; IN-VIVO; LIVER-SPECIFIC GENES; NUCLEAR RECEPTORS; REPORTER GENE; TRANSCRIPTIONAL ACTIVATIONS;

AMINO ACIDS; BINDING ENERGY; BINDING SITES; GENE ENCODING; LIVER; NUCLEIC ACIDS; PHOSPHORYLATION; TRANSCRIPTION; TRANSCRIPTION FACTORS;

DNA;

APOLIPOPROTEIN A1; DNA DEPENDENT PROTEIN KINASE; HEPATOCYTE NUCLEAR FACTOR 3BETA; HEPATOCYTE NUCLEAR FACTOR 4ALPHA; PHOSPHOPROTEIN; SERINE; WINGED HELIX TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; GENE MUTATION; GENE TRANSLOCATION; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PHOSPHORYLATION; SIGNAL TRANSDUCTION; TRANSCRIPTION INITIATION;

ANIMALS; APOLIPOPROTEIN A-I; BINDING SITES; CELL NUCLEUS; CYTOPLASM; DNA; DNA-ACTIVATED PROTEIN KINASE; HELA CELLS; HEPATOCYTE NUCLEAR FACTOR 3-BETA; HEPATOCYTE NUCLEAR FACTOR 4; HUMANS; MUTAGENESIS, SITE-DIRECTED; PHOSPHORYLATION; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; RATS; SUBSTRATE SPECIFICITY; TRANSCRIPTIONAL ACTIVATION;

ANIMALIA;

EID: 67749147468     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.016295     Document Type: Article

References (51)

1. Brivanlou, A. H., and Darnell, J. E., Jr. (2002) Science 295, 813-818
2. Roeder, R. G. (2005) FEBS Lett. 579, 909-915
3. Roeder, R. G. (1998) Cold Spring Harbor Symp. Quant. Biol. 63, 201-218
4. Glass, C. K., and Rosenfeld, M. G. (2000) Genes Dev. 14, 121-141
5. Lemon, B., and Tjian, R. (2000) Genes Dev. 14, 2551-2569
6. Malik, S., and Roeder, R. G. (2005) Trends Biochem. Sci. 30, 256-263
7. Malik, S., and Roeder, R. G. (2003) in Handbook of Cell Signaling (Bradshaw, R. A., and Dennis, E. A., eds) Vol. 3, pp. 11-19, Elsevier Academic Press, San Diego, CA
8. Zannis, V. I., Kan, H. Y., Kritis, A., Zanni, E., and Kardassis, D. (2001) Front. Biosci. 6, D456-504
9. Malik, S. (2003) Front. Biosci. 8, d360-368
10. Sladek, F. M. (1993) Receptor 3, 223-232
11. Harnish, D. C., Malik, S., and Karathanasis, S. K. (1994) J. Biol. Chem. 269, 28220-28226
12. Harnish, D. C., Malik, S., Kilbourne, E., Costa, R., and Karathanasis, S. K. (1996) J. Biol. Chem. 271, 13621-13628
13. Rada-Iglesias, A., Wallerman, O., Koch, C., Ameur, A., Enroth, S., Clelland, G., Wester, K., Wilcox, S., Dovey, O. M., Ellis, P. D., Wraight, V. L., James, K., Andrews, R., Langford, C., Dhami, P., Carter, N., Vetrie, D., Pontén, F., Komorowski, J., Dunham, I., and Wadelius, C. (2005) Hum. Mol. Genet. 14, 3435-3447
14. Rochette-Egly, C. (2005) J. Biol. Chem. 280, 32565-32568
15. Barrero, M. J., and Malik, S. (2006) Mol. Cell 24, 233-243
16. Tuteja, G., and Kaestner, K. H. (2007) Cell 131, 192
17. Tuteja, G., and Kaestner, K. H. (2007) Cell 130, 1160
18. Friedman, J. R., and Kaestner, K. H. (2006) Cell. Mol. Life Sci. 63, 2317-2328
19. Clark, K. L., Halay, E. D., Lai, E., and Burley, S. K. (1993) Nature 364, 412-420
20. Lai, E., Clark, K. L., Burley, S. K., and Darnell, J. E., Jr. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 10421-10423
21. Cirillo, L. A., and Zaret, K. S. (1999) Mol. Cell 4, 961-969
22. Cirillo, L. A., Lin, F. R., Cuesta, I., Friedman, D., Jarnik, M., and Zaret, K. S. (2002) Mol. Cell 9, 279-289
23. Carroll, J. S., Liu, X. S., Brodsky, A. S., Li, W., Meyer, C. A., Szary, A. J., Eeckhoute, J., Shao, W., Hestermann, E. V., Geistlinger, T. R., Fox, E. A., Silver, P. A., and Brown, M. (2005) Cell 122, 33-43
24. Malik, S., and Roeder, R. G. (2003) Methods Enzymol. 364, 257-284
25. Kuo, M. H., and Allis, C. D. (1999) Methods 19, 425-433
26. Sastry, K. N., Seedorf, U., and Karathanasis, S. K. (1988) Mol. Cell. Biol. 8, 605-614
27. Dignam, J. D., Martin, P. L., Shastry, B. S., and Roeder, R. G. (1983) Methods Enzymol. 101, 582-598
28. Kyono, Y., Sugiyama, N., Imami, K., Tomita, M., and Ishihama, Y. (2008) J. Proteome Res. 7, 4585-4593
29. Ishihama, Y., Rappsilber, J., Andersen, J. S., and Mann, M. (2002) J. Chromatogr. A 979, 233-239
30. Olsen, J. V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P., and Mann, M. (2006) Cell 127, 635-648
31. Lees-Miller, S. P., Sakaguchi, K., Ullrich, S. J., Appella, E., and Anderson, C. W. (1992) Mol. Cell. Biol. 12, 5041-5049
32. Anderson, C. W., and Lees-Miller, S. P. (1992) Crit. Rev. Eukaryot. Gene Expr. 2, 283-314
33. Bharti, A., Kraeft, S. K., Gounder, M., Pandey, P., Jin, S., Yuan, Z. M., Lees-Miller, S. P., Weichselbaum, R., Weaver, D., Chen, L. B., Kufe, D., and Kharbanda, S. (1998) Mol. Cell. Biol. 18, 6719-6728
34. Durocher, D., and Jackson, S. P. (2001) Curr. Opin. Cell Biol. 13, 225-231
35. Wolfrum, C., Besser, D., Luca, E., and Stoffel, M. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 11624-11629
36. Wolfrum, C., Asilmaz, E., Luca, E., Friedman, J. M., and Stoffel, M. (2004) Nature 432, 1027-1032
37. Anderson, C. W. (1993) Trends Biochem. Sci. 18, 433-437
38. Dvir, A., Stein, L. Y., Calore, B. L., and Dynan, W. S. (1993) J. Biol. Chem. 268, 10440-10447
39. Chibazakura, T., Watanabe, F., Kitajima, S., Tsukada, K., Yasukochi, Y., and Teraoka, H. (1997) Eur. J. Biochem. 247, 1166-1173
40. Woodard, R. L., Anderson, M. G., and Dynan, W. S. (1999) J. Biol. Chem. 274, 478-485
41. Ko, L., and Chin, W. W. (2003) J. Biol. Chem. 278, 11471-11479
42. Jackson, S. P., MacDonald, J. J., Lees-Miller, S., and Tjian, R. (1990) Cell 63, 155-165
43. Ju, B. G., Lunyak, V. V., Perissi, V., Garcia-Bassets, I., Rose, D. W., Glass, C. K., and Rosenfeld, M. G. (2006) Science 312, 1798-1802
44. Wong, R. H., Chang, I., Hudak, C. S., Hyun, S., Kwan, H. Y., and Sul, H. S. (2009) Cell 136, 1056-1072
45. Lipford, J. R., and Deshaies, R. J. (2003) Nat. Cell Biol. 5, 845-850
46. Collins, G. A., and Tansey, W. P. (2006) Curr. Opin. Genet. Dev. 16, 197-202
47. Wu, R. C., Feng, Q., Lonard, D. M., and O'Malley, B. W. (2007) Cell 129, 1125-1140
48. Downs, J. A., and Jackson, S. P. (2004) Nat. Rev. Mol. Cell Biol. 5, 367-378
49. Kysela, B., Chovanec, M., and Jeggo, P. A. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 1877-1882
50. Dou, Y., Song, X., Liu, Y., and Gorovsky, M. A. (2005) Mol. Cell. Biol. 25, 3914-3922
51. Koop, R., Di Croce, L., and Beato, M. (2003) EMBO J. 22, 588-599