Two Functional Modes of a Nuclear Receptor-Recruited Arginine Methyltransferase in Transcriptional Activation

Molecular Cell

Volumn 24, Issue 2, 2006, Pages 233-243

  Barrero, María J ^a   Malik, Sohail ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

DNA

Indexed keywords

ACYLTRANSFERASE; ARGININE TRANSFER RNA LIGASE;

ARTICLE; BINDING AFFINITY; BINDING SITE; CELL DIFFERENTIATION; CONTROLLED STUDY; CORRELATION ANALYSIS; EMBRYO; ENZYME ACTIVATION; ENZYME ACTIVITY; GENE TARGETING; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; INTESTINE CELL; LIGAND BINDING; METHYLATION;

AMINO ACID SEQUENCE; BINDING SITES; CACO-2 CELLS; CELL DIFFERENTIATION; CELL NUCLEUS; DNA METHYLATION; HEPATOCYTE NUCLEAR FACTOR 4; HISTONES; HUMANS; METHYLTRANSFERASES; MOLECULAR SEQUENCE DATA; PROTEIN-ARGININE N-METHYLTRANSFERASE; PROTEIN-ARGININE N-METHYLTRANSFERASES; RECEPTORS, CYTOPLASMIC AND NUCLEAR; REPRESSOR PROTEINS; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION, GENETIC; TRANSCRIPTIONAL ACTIVATION;

EID: 33749664150     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2006.09.020     Document Type: Article

References (41)

1. An W., and Roeder R.G. Reconstitution and transcriptional analysis of chromatin in vitro. Methods Enzymol. 377 (2004) 460-474
2. An W., Kim J., and Roeder R.G. Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53. Cell 117 (2004) 735-748
3. Bedford M.T., and Richard S. Arginine methylation: an emerging regulator of protein function. Mol. Cell 18 (2005) 263-272
4. Chen W.S., Manova K., Weinstein D.C., Duncan S.A., Plump A.S., Prezioso V.R., Bachvarova R.F., and Darnell Jr. J.E. Disruption of the HNF-4 gene, expressed in visceral endoderm, leads to cell death in embryonic ectoderm and impaired gastrulation of mouse embryos. Genes Dev. 8 (1994) 2466-2477
5. Chen D., Huang S.M., and Stallcup M.R. Synergistic, p160 coactivator-dependent enhancement of estrogen receptor function by CARM1 and p300. J. Biol. Chem. 275 (2000) 40810-40816
6. Daniel J.A., Pray-Grant M.G., and Grant P.A. Effector proteins for methylated histones: an expanding family. Cell Cycle 4 (2005) 919-926
7. Dell H., and Hadzopoulou-Cladaras M. CREB-binding protein is a transcriptional coactivator for hepatocyte nuclear factor-4 and enhances apolipoprotein gene expression. J. Biol. Chem. 274 (1999) 9013-9021
8. Dhe-Paganon S., Duda K., Iwamoto M., Chi Y.I., and Shoelson S.E. Crystal structure of the HNF4 alpha ligand binding domain in complex with endogenous fatty acid ligand. J. Biol. Chem. 277 (2002) 37973-37976
9. Hadzopoulou-Cladaras M., Kistanova E., Evagelopoulou C., Zeng S., Cladaras C., and Ladias J.A. Functional domains of the nuclear receptor hepatocyte nuclear factor 4. J. Biol. Chem. 272 (1997) 539-550
10. Hayhurst G.P., Lee Y.H., Lambert G., Ward J.M., and Gonzalez F.J. Hepatocyte nuclear factor 4alpha (nuclear receptor 2A1) is essential for maintenance of hepatic gene expression and lipid homeostasis. Mol. Cell. Biol. 21 (2001) 1393-1403
11. Hertz R., Magenheim J., Berman I., and Bar-Tana J. Fatty acyl-CoA thioesters are ligands of hepatic nuclear factor-4alpha. Nature 392 (1998) 512-516
12. Huang S., Litt M., and Felsenfeld G. Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications. Genes Dev. 19 (2005) 1885-1893
13. Jenuwein T., and Allis C.D. Translating the histone code. Science 293 (2001) 1074-1080
14. Jiang G., Nepomuceno L., Yang Q., and Sladek F.M. Serine/threonine phosphorylation of orphan receptor hepatocyte nuclear factor 4. Arch. Biochem. Biophys. 340 (1997) 1-9
15. Koh S.S., Chen D., Lee Y.H., and Stallcup M.R. Synergistic enhancement of nuclear receptor function by p160 coactivators and two coactivators with protein methyltransferase activities. J. Biol. Chem. 276 (2001) 1089-1098
16. Kundu T.K., Palhan V.B., Wang Z., An W., Cole P.A., and Roeder R.G. Activator-dependent transcription from chromatin in vitro involving targeted histone acetylation by p300. Mol. Cell 6 (2000) 551-561
17. Lee Y.H., Koh S.S., Zhang X., Cheng X., and Stallcup M.R. Synergy among nuclear receptor coactivators: selective requirement for protein methyltransferase and acetyltransferase activities. Mol. Cell. Biol. 22 (2002) 3621-3632
18. Liu Z., Wong J., Tsai S.Y., Tsai M.J., and O'Malley B.W. Sequential recruitment of steroid receptor coactivator-1 (SRC-1) and p300 enhances progesterone receptor-dependent initiation and reinitiation of transcription from chromatin. Proc. Natl. Acad. Sci. USA 98 (2001) 12426-12431
19. Loyola A., He S., Oh S., McCafferty D.G., and Reinberg D. Techniques used to study transcription on chromatin templates. Methods Enzymol. 377 (2004) 474-499
20. Ma H., Shang Y., Lee D.Y., and Stallcup M.R. Study of nuclear receptor-induced transcription complex assembly and histone modification by chromatin immunoprecipitation assays. Methods Enzymol. 364 (2003) 284-296
21. Maeda Y., Rachez C., Hawel III L., Byus C.V., Freedman L.P., and Sladek F.M. Polyamines modulate the interaction between nuclear receptors and vitamin D receptor-interacting protein 205. Mol. Endocrinol. 16 (2002) 1502-1510
22. Malik S. Transcriptional regulation of the apolipoprotein AI gene. Front. Biosci. 8 (2003) d360-d368
23. Malik S., and Karathanasis S.K. TFIIB-directed transcriptional activation by the orphan nuclear receptor hepatocyte nuclear factor 4. Mol. Cell. Biol. 16 (1996) 1824-1831
24. Malik S., and Roeder R.G. Isolation and functional characterization of the TRAP/Mediator complex. Methods Enzymol. 364 (2003) 257-284
25. Malik S., Wallberg A.E., Kang Y.K., and Roeder R.G. TRAP/SMCC/Mediator-dependent transcriptional activation from DNA and chromatin templates by orphan nuclear receptor hepatocyte nuclear factor 4. Mol. Cell. Biol. 22 (2002) 5626-5637
26. Rochette-Egly C. Dynamic combinatorial networks in nuclear receptor-mediated transcription. J. Biol. Chem. 280 (2005) 32565-32568
27. Roeder R.G. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 579 (2005) 909-915
28. Sladek F.M. Orphan receptor HNF-4 and liver-specific gene expression. Receptor 3 (1993) 223-232
29. Sladek F.M., Zhong W.M., Lai E., and Darnell Jr. J.E. Liver-enriched transcription factor HNF-4 is a novel member of the steroid hormone receptor superfamily. Genes Dev. 4 (1990) 2353-2365
30. Soutoglou E., and Talianidis I. Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation. Science 295 (2002) 1901-1904
31. Soutoglou E., Katrakili N., and Talianidis I. Acetylation regulates transcription factor activity at multiple levels. Mol. Cell 5 (2000) 745-751
32. Stallcup M.R. Role of protein methylation in chromatin remodeling and transcriptional regulation. Oncogene 20 (2001) 3014-3020
33. Strahl B.D., Briggs S.D., Brame C.J., Caldwell J.A., Koh S.S., Ma H., Cook R.G., Shabanowitz J., Hunt D.F., Stallcup M.R., and Allis C.D. Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1. Curr. Biol. 11 (2001) 996-1000
34. Vermeulen M., and Stunnenberg H.G. An in vitro assay to study the recruitment and substrate specificity of chromatin modifying enzymes. Biol. Proced. Online 6 (2004) 157-162
35. Viollet B., Kahn A., and Raymondjean M. Protein kinase A-dependent phosphorylation modulates DNA-binding activity of hepatocyte nuclear factor 4. Mol. Cell. Biol. 17 (1997) 4208-4219
36. Wang J.C., Stafford J.M., and Granner D.K. SRC-1 and GRIP1 coactivate transcription with hepatocyte nuclear factor 4. J. Biol. Chem. 273 (1998) 30847-30850
37. Wang H., Huang Z.Q., Xia L., Feng Q., Erdjument-Bromage H., Strahl B.D., Briggs S.D., Allis C.D., Wong J., Tempst P., and Zhang Y. Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor. Science 293 (2001) 853-857
38. Watt A.J., Garrison W.D., and Duncan S.A. HNF4: a central regulator of hepatocyte differentiation and function. Hepatology 37 (2003) 1249-1253
39. Wisely G.B., Miller A.B., Davis R.G., Thornquest Jr. A.D., Johnson R., Spitzer T., Sefler A., Shearer B., Moore J.T., Willson T.M., and Williams S.P. Hepatocyte nuclear factor 4 is a transcription factor that constitutively binds fatty acids. Structure 10 (2002) 1225-1234
40. Xu J., and Li Q. Review of the in vivo functions of the p160 steroid receptor coactivator family. Mol. Endocrinol. 17 (2003) 1681-1692
41. Yoshida E., Aratani S., Itou H., Miyagishi M., Takiguchi M., Osumu T., Murakami K., and Fukamizu A. Functional association between CBP and HNF4 in trans-activation. Biochem. Biophys. Res. Commun. 241 (1997) 664-669