-
1
-
-
0000036588
-
Biosynthesis of the isoprenoid quinones menaquinone (vitamin K2) and ubiquinone (coenzyme Q)
-
Neidhardt, F. C, Curtiss, R, III, Ingraham, J. L, Lin, E. C. C, Low, K. B, Magasanik, B, Reznikoff,W. S, Riley, M, Schaechter, M, and Umbarger, H. E, Eds, 2nd ed, American Society for Microbiology, Washington, DC
-
Meganathan, R. (1996) Biosynthesis of the isoprenoid quinones menaquinone (vitamin K2) and ubiquinone (coenzyme Q), in Escherichia coli and Salmonella: cellular and molecular biology (Neidhardt, F. C., Curtiss, R., III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff,W. S., Riley, M., Schaechter, M., and Umbarger, H. E., Eds.) 2nd ed., Vol. 1, pp 642-656, American Society for Microbiology, Washington, DC.
-
(1996)
Escherichia coli and Salmonella: Cellular and molecular biology
, vol.1
, pp. 642-656
-
-
Meganathan, R.1
-
2
-
-
0035219809
-
Biosynthesis of menaquinone (vitamin K2) and ubiquinone (coenzyme Q): A perspective on enzymatic mechanisms
-
Meganathan, R. (2001) Biosynthesis of menaquinone (vitamin K2) and ubiquinone (coenzyme Q): A perspective on enzymatic mechanisms. Vitam. Horm. 61, 173-218.
-
(2001)
Vitam. Horm
, vol.61
, pp. 173-218
-
-
Meganathan, R.1
-
3
-
-
36348960245
-
Determination of the stereochemistry of 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylic acid, a key intermediate in menaquinone biosynthesis
-
Jiang, M., Chen, M., Cao, Y., Yang, Y., Sze, K. H., Chen, X., and Guo, Z. (2007) Determination of the stereochemistry of 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylic acid, a key intermediate in menaquinone biosynthesis. Org. Lett. 9, 4765-4767.
-
(2007)
Org. Lett
, vol.9
, pp. 4765-4767
-
-
Jiang, M.1
Chen, M.2
Cao, Y.3
Yang, Y.4
Sze, K.H.5
Chen, X.6
Guo, Z.7
-
4
-
-
40849094350
-
Identification and characterization of (1R,6R)-2-succinyl-6-hydroxy-2,4- cyclohexadiene-1-carboxylate synthase in the menaquinone biosynthesis of Escherichia coli
-
Jiang, M., Chen, X., Guo, Z. F., Cao, Y., Chen, M., and Guo, Z. (2008) Identification and characterization of (1R,6R)-2-succinyl-6-hydroxy-2,4- cyclohexadiene-1-carboxylate synthase in the menaquinone biosynthesis of Escherichia coli. Biochemistry 47, 3426-3434.
-
(2008)
Biochemistry
, vol.47
, pp. 3426-3434
-
-
Jiang, M.1
Chen, X.2
Guo, Z.F.3
Cao, Y.4
Chen, M.5
Guo, Z.6
-
5
-
-
0034923923
-
Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
-
Gerlt, J. A., and Babbitt, P. C. (2001) Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies. Annu. Rev. Biochem. 70, 209-246.
-
(2001)
Annu. Rev. Biochem
, vol.70
, pp. 209-246
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
6
-
-
9744279773
-
Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity
-
Gerlt, J. A., Babbitt, P. C., and Rayment, I. (2005) Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity. Arch. Biochem. Biophys. 433, 59-70.
-
(2005)
Arch. Biochem. Biophys
, vol.433
, pp. 59-70
-
-
Gerlt, J.A.1
Babbitt, P.C.2
Rayment, I.3
-
7
-
-
0033528659
-
Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o- succinylbenzoate synthase
-
Palmer, D. R. J., Garrett, J. B., Sharma, V., Meganathan, R., Babbitt, P. C., and Gerlt, J. A. (1999) Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o- succinylbenzoate synthase. Biochemistry 38, 4252-4258.
-
(1999)
Biochemistry
, vol.38
, pp. 4252-4258
-
-
Palmer, D.R.J.1
Garrett, J.B.2
Sharma, V.3
Meganathan, R.4
Babbitt, P.C.5
Gerlt, J.A.6
-
8
-
-
0017324044
-
Serine proteases: Structure and mechanism of catalysis
-
Kraut, J. (1977) Serine proteases: Structure and mechanism of catalysis. Annu. Rev. Biochem. 46, 331-358.
-
(1977)
Annu. Rev. Biochem
, vol.46
, pp. 331-358
-
-
Kraut, J.1
-
9
-
-
0024538543
-
How do serine proteases really work?
-
Warshel, A., Naray-Szabo, G., Sussman, F., and Hwang, J.-K. (1989) How do serine proteases really work?. Biochemistry 28, 3629-3637.
-
(1989)
Biochemistry
, vol.28
, pp. 3629-3637
-
-
Warshel, A.1
Naray-Szabo, G.2
Sussman, F.3
Hwang, J.-K.4
-
10
-
-
0026540411
-
The a/β hydrolase fold
-
Ollis, D. L., Cheah, E., Cygler, M., Dijkstra, B., Frolow, F., Franken, S. M., Harel, M., Remington, S. J., Silman, I., Schrag, J., Sussman, J. L., Verschueren,K.H. G., and Goldman, A. (1992) The a/β hydrolase fold. Protein Eng. 3, 197-211.
-
(1992)
Protein Eng
, vol.3
, pp. 197-211
-
-
Ollis, D.L.1
Cheah, E.2
Cygler, M.3
Dijkstra, B.4
Frolow, F.5
Franken, S.M.6
Harel, M.7
Remington, S.J.8
Silman, I.9
Schrag, J.10
Sussman, J.L.11
Verschueren, K.H.G.12
Goldman, A.13
-
11
-
-
0034285515
-
Alpha/beta-hydrolase fold enzymes: Structure, functions and mechanisms
-
Holmquist, M. (2000) Alpha/beta-hydrolase fold enzymes: Structure, functions and mechanisms. Curr. Protein Pept. Sci. 1, 209-235.
-
(2000)
Curr. Protein Pept. Sci
, vol.1
, pp. 209-235
-
-
Holmquist, M.1
-
12
-
-
0030870888
-
Pre-steady-state kinetic analysis of 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase: Kinetic evidence for enol/keto tautomerization
-
Henderson, I. M. J., and Bugg, T. D. H. (1997) Pre-steady-state kinetic analysis of 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase: Kinetic evidence for enol/keto tautomerization. Biochemistry 36, 12252-12258.
-
(1997)
Biochemistry
, vol.36
, pp. 12252-12258
-
-
Henderson, I.M.J.1
Bugg, T.D.H.2
-
13
-
-
12344275671
-
Catalytic mechanism of C-C hydrolase MhpC from Escherichia coli: Kinetic analysis of His263 and Ser110 site-directed mutants
-
Li, C., Montgomery, M. G., Mohammed, F., Li, J.-J., Wood, S. P., and Bugg, T. D. H. (2005) Catalytic mechanism of C-C hydrolase MhpC from Escherichia coli: Kinetic analysis of His263 and Ser110 site-directed mutants. J. Mol. Biol. 346, 241-251.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 241-251
-
-
Li, C.1
Montgomery, M.G.2
Mohammed, F.3
Li, J.-J.4
Wood, S.P.5
Bugg, T.D.H.6
-
14
-
-
12344333653
-
The structure of the C-C bond hydrolase MhpC provides insights into its catalytic mechanism
-
Dunn, G., Montgomery, M. G., Mohammed, F., Coker, A., Cooper, J. B., Robertson, T., Garcia, J.-L., Bugg, T. D. H., and Wood, S. P. (2005) The structure of the C-C bond hydrolase MhpC provides insights into its catalytic mechanism. J. Mol. Biol. 346, 253-265.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 253-265
-
-
Dunn, G.1
Montgomery, M.G.2
Mohammed, F.3
Coker, A.4
Cooper, J.B.5
Robertson, T.6
Garcia, J.-L.7
Bugg, T.D.H.8
Wood, S.P.9
-
15
-
-
0034673180
-
Catalytic mechanism of a C-C hydrolase enzyme: Evidence for a gem-diol intermediate, not an acyl enzyme
-
Fleming, S. M., Robertson, T. A., Langley, G. J., and Bugg, T. D. H. (2000) Catalytic mechanism of a C-C hydrolase enzyme: evidence for a gem-diol intermediate, not an acyl enzyme. Biochemistry 39, 1522-1531.
-
(2000)
Biochemistry
, vol.39
, pp. 1522-1531
-
-
Fleming, S.M.1
Robertson, T.A.2
Langley, G.J.3
Bugg, T.D.H.4
-
16
-
-
33846527200
-
Investigation of a general base mechanism for ester hydrolysis in C-C hydrolase enzymes of the alpha/beta-hydrolase superfamily: A novel mechanism for the serine catalytic triad
-
Li, J. J., and Bugg, T. D. H. (2007) Investigation of a general base mechanism for ester hydrolysis in C-C hydrolase enzymes of the alpha/beta-hydrolase superfamily: a novel mechanism for the serine catalytic triad. Org. Biomol. Chem. 5, 507-513.
-
(2007)
Org. Biomol. Chem
, vol.5
, pp. 507-513
-
-
Li, J.J.1
Bugg, T.D.H.2
-
17
-
-
34648813427
-
Menaquinone biosynthesis in Escherichia coli: Identification of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) as a novel intermediate and re-evaluation of MenD activity
-
Jiang, M., Cao, Y., Guo, Z. F., Chen, M., Chen, X., and Guo, Z. (2007) Menaquinone biosynthesis in Escherichia coli: Identification of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) as a novel intermediate and re-evaluation of MenD activity. Biochemistry 46, 10979-10989.
-
(2007)
Biochemistry
, vol.46
, pp. 10979-10989
-
-
Jiang, M.1
Cao, Y.2
Guo, Z.F.3
Chen, M.4
Chen, X.5
Guo, Z.6
-
18
-
-
0020346954
-
Solvent isotope effects on enzyme systems
-
Schowen, K. B., and Schowen, R. L. (1982) Solvent isotope effects on enzyme systems. Methods Enzymol. 87, 551-606.
-
(1982)
Methods Enzymol
, vol.87
, pp. 551-606
-
-
Schowen, K.B.1
Schowen, R.L.2
-
19
-
-
0034630454
-
Two continuous spectrophotometric assays for methionine aminopeptidase
-
Zhou, Y., Guo, X. C., Yi, T., Yoshimoto, T., and Pei, D. (2000) Two continuous spectrophotometric assays for methionine aminopeptidase. Anal. Biochem. 280, 159-165.
-
(2000)
Anal. Biochem
, vol.280
, pp. 159-165
-
-
Zhou, Y.1
Guo, X.C.2
Yi, T.3
Yoshimoto, T.4
Pei, D.5
-
20
-
-
36448991500
-
-
Larkin, M.A, Blackshields,G, Brown, N. P, Chenna, R, McGettigan, P. A, McWilliam, H, Valentin, F, Wallace, I.M, Wilm, A, Lopez, R, Thompson, J.D, Gibson,T. J, and Higgins, D.G, 2007 Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2978
-
Larkin, M.A., Blackshields,G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson,T. J., and Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2978.
-
-
-
-
21
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold, K., Bordoli, L., Kopp, J., and Schwede, T. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22, 195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
22
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K., and Olson, A. J. (1998) Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 19, 1639-1662.
-
(1998)
J. Comput. Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
23
-
-
67651233583
-
-
Frisch, M. J, Trucks, G. W, Schlegel, H. B, Scuseria, G. E, Robb, M. A, Cheeseman, J. R, Montgomery Jr, J. A, Vreven, T, Kudin,K. N, Burant, J. C, Millam, J. M, Iyengar, S. S, Tomasi, J, Barone, V, Mennucci, B, Cossi, M, Scalmani, G, Rega, N, Petersson, G. A, Nakatsuji, H, Hada, M, Ehara, M, Toyota, K, Fukuda, R, Hasegawa, J, Ishida, M, Nakajima, T, Honda, Y, Kitao, O, Nakai, H, Klene, M, Li, X, Knox, J. E, Hratchian, H. P, Cross, J. B, Adamo, C, Jaramillo, J, Gomperts, R, Stratmann, R. E, Yazyev, O, Austin, A. J, Cammi, R, Pomelli, C, Ochterski, J. W, Ayala, P. Y, Morokuma, K, Voth, G. A, Salvador, P, Dannenberg, J. J, Zakrzewski, V. G, Dapprich, S, Daniels, A. D, Strain, M. C, Farkas, O, Malick, D. K, Rabuck, A. D, Raghavachari, K, Foresman, J. B, Ortiz, J. V, Cui, Q, Baboul, A. G, Clifford, S, Cioslowski, J, Stefanov, B. B, Liu, G, Liashenko, A, Piskorz, P, Komaromi, I, Martin, R. L, Fox, D. J, Keith, T, Al-Laham
-
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery Jr, J. A., Vreven, T., Kudin,K. N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J. E., Hratchian, H. P., Cross, J. B., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, J. W., Ayala, P. Y., Morokuma, K., Voth, G. A., Salvador, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Ortiz, J. V., Cui, Q., Baboul, A. G., Clifford, S., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Martin, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Gonzalez, C., Pople, J. A. (2004) Gaussian 03, Revision C. 02, Gaussian Inc., Wallingford, CT.
-
-
-
-
25
-
-
33745229352
-
Evolution of structure and function in the o-succinylbenzoate synthase/N-acylamino acid racemase family of the enolase superfamily
-
Glasner,M. E., Fayazmanesh, N., Chiang, R. A., Sakai, A., Jacobson, M. P., Gerlt, J. A., and Babbitt, P. C. (2006) Evolution of structure and function in the o-succinylbenzoate synthase/N-acylamino acid racemase family of the enolase superfamily. J. Mol. Biol. 360, 228-250.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 228-250
-
-
Glasner, M.E.1
Fayazmanesh, N.2
Chiang, R.A.3
Sakai, A.4
Jacobson, M.P.5
Gerlt, J.A.6
Babbitt, P.C.7
-
26
-
-
0033528659
-
Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o- succinylbenzoate synthase
-
Palmer, D. R. J., Garrett, J. B., Sharma, V., Meganathan, R., Babbitt, P. C., and Gerlt, J. A. (1999) Unexpected divergence of enzyme function and sequence: "N-acylamino acid racemase" is o- succinylbenzoate synthase. Biochemistry 38, 4252-4258.
-
(1999)
Biochemistry
, vol.38
, pp. 4252-4258
-
-
Palmer, D.R.J.1
Garrett, J.B.2
Sharma, V.3
Meganathan, R.4
Babbitt, P.C.5
Gerlt, J.A.6
-
27
-
-
0034812536
-
The lesser "burden born" by o-succinylbenzoate synthase: An "easy" reaction involving a carboxylate carbon acid
-
Taylor, E. A., Palmer, D. R. J., and Gerlt, J. A. (2001) The lesser "burden born" by o-succinylbenzoate synthase: An "easy" reaction involving a carboxylate carbon acid. J. Am. Chem. Soc. 123, 5824-5825.
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 5824-5825
-
-
Taylor, E.A.1
Palmer, D.R.J.2
Gerlt, J.A.3
-
28
-
-
0035113799
-
The crotonase superfamily: Divergently related enzymes that catalyze different reactions involving acyl coenzyme A thioesters
-
Holden, H. M., Benning, M. M., Haller, T., and Gerlt, J. A. (2001) The crotonase superfamily: Divergently related enzymes that catalyze different reactions involving acyl coenzyme A thioesters. Acc. Chem. Res. 34, 145-157.
-
(2001)
Acc. Chem. Res
, vol.34
, pp. 145-157
-
-
Holden, H.M.1
Benning, M.M.2
Haller, T.3
Gerlt, J.A.4
-
29
-
-
0033564943
-
Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template
-
Xiang, H., Luo, L., Taylor, K. L., and Dunaway-Mariano, D. (1999) Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template. Biochemistry 38, 7638-7652.
-
(1999)
Biochemistry
, vol.38
, pp. 7638-7652
-
-
Xiang, H.1
Luo, L.2
Taylor, K.L.3
Dunaway-Mariano, D.4
-
30
-
-
0000346064
-
5-steroid isomerase
-
5-steroid isomerase. Science 276, 415-418.
-
(1997)
Science
, vol.276
, pp. 415-418
-
-
Wu, Z.R.1
Ebrahimian, S.2
Zawrotny, M.E.3
Thornburg, L.D.4
Perez-Alvarado, G.C.5
Brothers, P.6
Pollack, R.M.7
Summers, M.F.8
-
32
-
-
0032755401
-
5-3-ketosteroid isomerase from Pseudomonas testosteroni in complex with equilenin settles the correct hydrogen bonding scheme for transition state stabilization
-
5-3-ketosteroid isomerase from Pseudomonas testosteroni in complex with equilenin settles the correct hydrogen bonding scheme for transition state stabilization. J. Biol. Chem. 274, 32863-32868.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 32863-32868
-
-
Cho, H.-S.1
Ha, N.-C.2
Choi, G.3
Kim, H.-J.4
Lee, D.5
Oh, K.S.6
Kim, K.S.7
Lee, W.8
Choi, K.Y.9
Oh, B.-H.10
-
33
-
-
0343006258
-
Site-directed mutagenesis and the role of the oxyanion hole in subtilisin
-
Bryan, P., Pantoliano, M. W., Quill, S. G., Hsiao, H. Y., and Poulos, T. (1986) Site-directed mutagenesis and the role of the oxyanion hole in subtilisin. Proc. Natl. Acad. Sci. U.S.A. 83, 3743-3745.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A
, vol.83
, pp. 3743-3745
-
-
Bryan, P.1
Pantoliano, M.W.2
Quill, S.G.3
Hsiao, H.Y.4
Poulos, T.5
-
34
-
-
0000453071
-
Importance of hydrogen-bond formation in stabilizing the transition state of subtilisin
-
Wells, J. A., Cunningham, B. C., Graycar, T. P., and Estell, D. A. (1986) Importance of hydrogen-bond formation in stabilizing the transition state of subtilisin. Philos. Trans. R. Soc. London, Ser. A 317, 415-423.
-
(1986)
Philos. Trans. R. Soc. London, Ser. A
, vol.317
, pp. 415-423
-
-
Wells, J.A.1
Cunningham, B.C.2
Graycar, T.P.3
Estell, D.A.4
-
35
-
-
0024280501
-
Dissecting the catalytic triad of a serine protease
-
Carter, P, and Wells, J. A. (1988) Dissecting the catalytic triad of a serine protease. Nature 332, 564-568.
-
(1988)
Nature
, vol.332
, pp. 564-568
-
-
Carter, P.1
Wells, J.A.2
-
36
-
-
0014945734
-
Structure of crystalline alpha-chymotrypsin. IV. The structure of indoleacryloyl-alpha-chyotrypsin and its relevance to the hydrolytic mechanism of the enzyme
-
Henderson, R. (1970) Structure of crystalline alpha-chymotrypsin. IV. The structure of indoleacryloyl-alpha-chyotrypsin and its relevance to the hydrolytic mechanism of the enzyme. J. Mol. Biol. 54, 341-354.
-
(1970)
J. Mol. Biol
, vol.54
, pp. 341-354
-
-
Henderson, R.1
-
37
-
-
0015442372
-
Chymotrypsin: What can we learn about catalysis from x-ray diffraction?
-
Henderson, R., Wright, C. S., Hess, G. P., and Blow, D. M. (1971) Chymotrypsin: what can we learn about catalysis from x-ray diffraction?. Cold Spring Harbor Symp. Quant. Biol. 36, 63-69.
-
(1971)
Cold Spring Harbor Symp. Quant. Biol
, vol.36
, pp. 63-69
-
-
Henderson, R.1
Wright, C.S.2
Hess, G.P.3
Blow, D.M.4
-
38
-
-
0142242176
-
2 biosynthesis
-
2 biosynthesis. J. Biol. Chem. 278, 42352-42360.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 42352-42360
-
-
Truglio, J.J.1
Theis, K.2
Feng, Y.3
Gajda, R.4
Machutta, C.5
Tonge, P.J.6
Kisker, C.7
-
39
-
-
50249180217
-
Mechanisms and structures of crotonase superfamily enzymes - How nature controls enolate and oxyanion reactivity
-
Hamed, R. B., Batchelar, E. T., Clifton, I. J., and Schofield, C. J. (2008) Mechanisms and structures of crotonase superfamily enzymes - How nature controls enolate and oxyanion reactivity. Cell. Mol. Life Sci. 65, 2507-2527.
-
(2008)
Cell. Mol. Life Sci
, vol.65
, pp. 2507-2527
-
-
Hamed, R.B.1
Batchelar, E.T.2
Clifton, I.J.3
Schofield, C.J.4
-
40
-
-
0018707566
-
Effects of pH on enzymes
-
Tipton, K. F., and Dixon, H. B. (1979) Effects of pH on enzymes. Methods Enzymol. 63, 183-234.
-
(1979)
Methods Enzymol
, vol.63
, pp. 183-234
-
-
Tipton, K.F.1
Dixon, H.B.2
-
41
-
-
0022405087
-
Electron density calculations as an extension of protein structure refinement: Streptomyces griseus protease A at 1.5 Å resolution
-
Moult, J., Sussman, F., and James, M. N. G. (1985) Electron density calculations as an extension of protein structure refinement: Streptomyces griseus protease A at 1.5 Å resolution. J. Mol. Biol. 182, 555-566.
-
(1985)
J. Mol. Biol
, vol.182
, pp. 555-566
-
-
Moult, J.1
Sussman, F.2
James, M.N.G.3
-
42
-
-
0037379161
-
Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN′ by NMR
-
Day, R. M., Thalhauser, C. J., Sudmeier, J. L., Vincent, M. P., Torchilin, E. V., Sanford, D. G., Bachovchin, C. W., and Bachovchin, W. W. (2003) Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN′ by NMR. Protein Sci. 12, 794-810.
-
(2003)
Protein Sci
, vol.12
, pp. 794-810
-
-
Day, R.M.1
Thalhauser, C.J.2
Sudmeier, J.L.3
Vincent, M.P.4
Torchilin, E.V.5
Sanford, D.G.6
Bachovchin, C.W.7
Bachovchin, W.W.8
-
43
-
-
0027335769
-
1H NMR characterization of the urokinase kringle module: Structural, but not functional, relatedness to homologous domains
-
1H NMR characterization of the urokinase kringle module: Structural, but not functional, relatedness to homologous domains. J. Biol. Chem. 268, 13858-13866.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 13858-13866
-
-
Bokman, A.M.1
Jiménez-Barbero, J.2
Llinás, M.3
-
44
-
-
0024294290
-
NMR assignments of the four histidines of staphylococcal nuclease in native and denatured states
-
Alexandrescu, A. T., Mills, D. A., Ulrich, E. L., Chinami, M., and Markley, J. L. (1988) NMR assignments of the four histidines of staphylococcal nuclease in native and denatured states. Biochemistry 27, 2158-2165.
-
(1988)
Biochemistry
, vol.27
, pp. 2158-2165
-
-
Alexandrescu, A.T.1
Mills, D.A.2
Ulrich, E.L.3
Chinami, M.4
Markley, J.L.5
-
46
-
-
0000965663
-
Solvent isotopes effects, fractionation factors and mechanisms of proton-transfer reactions
-
Buncel, E, and Lee, C. C, Eds, pp, Elsevier, Amsterdam
-
Kresge, A. J., More, O., and Powell, M. F. (1987) Solvent isotopes effects, fractionation factors and mechanisms of proton-transfer reactions, in Isotopes in Organic Chemistry (Buncel, E., and Lee, C. C., Eds.) pp 177-273, Elsevier, Amsterdam.
-
(1987)
Isotopes in Organic Chemistry
, pp. 177-273
-
-
Kresge, A.J.1
More, O.2
Powell, M.F.3
-
47
-
-
0001735114
-
Protonic reorganization and substrate structure in catalysis by serine proteases
-
Elrod, J. P, Hogg, J. L., Quinn, D. M., Venkatasubban, K. S., and Schowen, R. L. (1980) Protonic reorganization and substrate structure in catalysis by serine proteases. J. Am. Chem. Soc. 102, 3917-3922.
-
(1980)
J. Am. Chem. Soc
, vol.102
, pp. 3917-3922
-
-
Elrod, J.P.1
Hogg, J.L.2
Quinn, D.M.3
Venkatasubban, K.S.4
Schowen, R.L.5
-
48
-
-
0015916426
-
One-proton catalysis in the deacetylation of acetyl-α-chymotrypsin
-
Pollock, E., Hogg, J. L., and Schowen, R. L. (1973) One-proton catalysis in the deacetylation of acetyl-α-chymotrypsin. J. Am. Chem. Soc. 95, 968-969.
-
(1973)
J. Am. Chem. Soc
, vol.95
, pp. 968-969
-
-
Pollock, E.1
Hogg, J.L.2
Schowen, R.L.3
-
49
-
-
0004686550
-
Correlative variations in enzyme-derived and substrate-derived structures of catalytic transition states. Implications for the catalytic strategy of acyl-transfer enzymes
-
Stein, R. L., Elrod, J. P., and Schowen, R. L. (1983) Correlative variations in enzyme-derived and substrate-derived structures of catalytic transition states. Implications for the catalytic strategy of acyl-transfer enzymes. J. Am. Chem. Soc. 105, 2446-2452.
-
(1983)
J. Am. Chem. Soc
, vol.105
, pp. 2446-2452
-
-
Stein, R.L.1
Elrod, J.P.2
Schowen, R.L.3
-
50
-
-
0017051706
-
Mechanism of action of serine proteases: Tetrahedral intermediate and concerted proton transfer
-
Hunkapiller, M. W., Forgac, M. D., and Richards, J. H. (1976) Mechanism of action of serine proteases: tetrahedral intermediate and concerted proton transfer. Biochemistry 15, 5581-5588.
-
(1976)
Biochemistry
, vol.15
, pp. 5581-5588
-
-
Hunkapiller, M.W.1
Forgac, M.D.2
Richards, J.H.3
-
51
-
-
0020787889
-
Catalysis by human leukocyte elastase: Substrate structural dependence of rate-limiting protolytic catalysis and operation of the charge relay system
-
Stein, R. L. (1983) Catalysis by human leukocyte elastase: substrate structural dependence of rate-limiting protolytic catalysis and operation of the charge relay system. J. Am. Chem. Soc. 105, 5111-5116.
-
(1983)
J. Am. Chem. Soc
, vol.105
, pp. 5111-5116
-
-
Stein, R.L.1
-
52
-
-
33947092702
-
One-proton catalysis in the intermolecular imidazole-catalyzed hydrolysis of esters and amides
-
Patterson, J. F., Huskey, W. P., Venkatasubban, K. S., and Hogg, J. L. (1978) One-proton catalysis in the intermolecular imidazole-catalyzed hydrolysis of esters and amides. J. Org. Chem. 43, 4935-4938.
-
(1978)
J. Org. Chem
, vol.43
, pp. 4935-4938
-
-
Patterson, J.F.1
Huskey, W.P.2
Venkatasubban, K.S.3
Hogg, J.L.4
-
53
-
-
34948820655
-
The hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB
-
Leduc, D., Battesti, A., and Bouveret, E. (2007) The hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB. J. Bacteriol. 189, 7112-7126.
-
(2007)
J. Bacteriol
, vol.189
, pp. 7112-7126
-
-
Leduc, D.1
Battesti, A.2
Bouveret, E.3
-
54
-
-
33947088315
-
How common are base-initiated, concerted 1,2 eliminations
-
Bordwell, F. G. (1972) How common are base-initiated, concerted 1,2 eliminations. Acc. Chem. Res. 5, 374-381.
-
(1972)
Acc. Chem. Res
, vol.5
, pp. 374-381
-
-
Bordwell, F.G.1
-
55
-
-
11944264184
-
Gas-phase base-induced 1,4-eliminations: Occurrence of single-, double-, and triple-well E1cb mechanisms
-
Bickelhaupt, F. M., Buisman, G. J. H., Koning, L. J., Nibbering, N. M. M., and Baerends, E. J. (1995) Gas-phase base-induced 1,4-eliminations: Occurrence of single-, double-, and triple-well E1cb mechanisms. J. Am. Chem. Soc. 117, 9889-9899.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 9889-9899
-
-
Bickelhaupt, F.M.1
Buisman, G.J.H.2
Koning, L.J.3
Nibbering, N.M.M.4
Baerends, E.J.5
-
56
-
-
1542709799
-
Theoretical studies of eliminations. 6. The regiochemistry and stereochemistry of the gas-phase reactions of 3-halocyclohexenes with fluoride. An ab initio study
-
Gronert, S., and Kass, S.R. (1997) Theoretical studies of eliminations. 6. The regiochemistry and stereochemistry of the gas-phase reactions of 3-halocyclohexenes with fluoride. An ab initio study. J. Org. Chem. 62, 7991-8000.
-
(1997)
J. Org. Chem
, vol.62
, pp. 7991-8000
-
-
Gronert, S.1
Kass, S.R.2
-
57
-
-
67651236526
-
-
Creighton, D. J., and Murthy, N. S. R. K. (1990) in The Enzymes (Sigman, D. S., and Boyer, P. D., Eds.) 19, pp 397-403, Academic Press, San Diego, CA.
-
Creighton, D. J., and Murthy, N. S. R. K. (1990) in The Enzymes (Sigman, D. S., and Boyer, P. D., Eds.) Vol. 19, pp 397-403, Academic Press, San Diego, CA.
-
-
-
-
58
-
-
0030959729
-
Cyclohexenyl and cyclohexylidene inhibitors of 3-dehydroquinate synthase: Active site interactions relevant to enzyme mechanism and inhibitor design
-
Montchamp, J.-L., and Frost, J. W. (1997) Cyclohexenyl and cyclohexylidene inhibitors of 3-dehydroquinate synthase: Active site interactions relevant to enzyme mechanism and inhibitor design. J. Am. Chem. Soc. 119, 7645-7653.
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 7645-7653
-
-
Montchamp, J.-L.1
Frost, J.W.2
-
59
-
-
0033545895
-
Catalytic mechanism of scytalone dehydratase: Site-directed mutagenisis, kinetic isotope effects, and alternate substrates
-
Basarab, G. S., Steffens, J. J., Wawrzak, Z., Schwartz, R. S., Lundqvist, T., and Jordan, D. B. (1999) Catalytic mechanism of scytalone dehydratase: Site-directed mutagenisis, kinetic isotope effects, and alternate substrates. Biochemistry 38, 6012-6024.
-
(1999)
Biochemistry
, vol.38
, pp. 6012-6024
-
-
Basarab, G.S.1
Steffens, J.J.2
Wawrzak, Z.3
Schwartz, R.S.4
Lundqvist, T.5
Jordan, D.B.6
-
60
-
-
61749084462
-
Probing the catalytic mechanism of Sribosylhomocysteinase (LuxS) with catalytic intermediates and substrate analogues
-
Gopishetty, B., Zhu, J., Rajan, R., Sobczak, A. J., Wnuk, S. F., Bell, C. E., and Pei, D. (2009) Probing the catalytic mechanism of Sribosylhomocysteinase (LuxS) with catalytic intermediates and substrate analogues. J. Am. Chem. Soc. 131, 1243-1250.
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 1243-1250
-
-
Gopishetty, B.1
Zhu, J.2
Rajan, R.3
Sobczak, A.J.4
Wnuk, S.F.5
Bell, C.E.6
Pei, D.7
|