-
1
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA Elements) Project
-
DOI 10.1126/science.1105136
-
The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004; 306:636-640 (Pubitemid 39440902)
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 636-640
-
-
Feingold, E.A.1
Good, P.J.2
Guyer, M.S.3
Kamholz, S.4
Liefer, L.5
Wetterstrand, K.6
Collins, F.S.7
Gingeras, T.R.8
Kampa, D.9
Sekinger, E.A.10
Cheng, J.11
Hirsch, H.12
Ghosh, S.13
Zhu, Z.14
Patel, S.15
Piccolboni, A.16
Yang, A.17
Tammana, H.18
Bekiranov, S.19
Kapranov, P.20
Harrison, R.21
Church, G.22
Struhl, K.23
Ren, B.24
Kim, T.H.25
Barrera, L.O.26
Qu, C.27
Van Calcar, S.28
Luna, R.29
Glass, C.K.30
Rosenfeld, M.G.31
Guigo, R.32
Antonarakis, S.E.33
Birney, E.34
Brent, M.35
Pachter, L.36
Reymond, A.37
Dermitzakis, E.T.38
Dewey, C.39
Keefe, D.40
Denoeud, F.41
Lagarde, J.42
Ashurst, J.43
Hubbard, T.44
Wesselink, J.J.45
Castelo, R.46
Eyras, E.47
Myers, R.M.48
Sidow, A.49
Batzoglou, S.50
Trinklein, N.D.51
Hartman, S.J.52
Aldred, S.F.53
Anton, E.54
Schroeder, D.I.55
Marticke, S.S.56
Nguyen, L.57
Schmutz, J.58
Grimwood, J.59
Dickson, M.60
Cooper, G.M.61
Stone, E.A.62
Asimenos, G.63
Brudno, M.64
Dutta, A.65
Kamani, N.66
Taylor, C.M.67
Kim, H.K.68
Robins, G.69
Stamatoyannopoulos, G.70
Stamatoyannopoulos, J.A.71
Dorschner, M.72
Sabo, P.73
Hawrylycz, M.74
Humbert, R.75
Wallace, J.76
Yu, M.77
Navas, P.A.78
McArthur, M.79
Noble, W.S.80
Dunham, I.81
Koch, C.M.82
Andrews, R.M.83
Celland, G.K.84
Wilcox, S.85
Fowler, J.C.86
James, K.D.87
Groth, P.88
Dovey, O.M.89
Ellis, P.D.90
Wraight, V.L.91
Mungall, A.J.92
Dhami, P.93
Fiegler, H.94
Langford, C.F.95
Carter, N.P.96
Vetrie, D.97
Snyder, M.98
Euskirchen, G.99
more..
-
2
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
DOI 10.1126/science.1103388
-
Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, et al. Global identification of human transcribed sequences with genome tiling arrays. Science 2004; 306:2242-2246 (Pubitemid 40024458)
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
Rinn, J.L.7
Tongprasit, W.8
Samanta, M.9
Weissman, S.10
Gerstein, M.11
Snyder, M.12
-
3
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, et al. The transcriptional landscape of the mammalian genome. Science 2005; 309:1559-1563
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
-
4
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, et al. Divergent transcription from active promoters. Science 2008; 322:1849-1851
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
-
5
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998; 391:806-811
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
6
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 2008; 9:102-114
-
(2008)
Nat Rev Genet
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
7
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
Lanz RB, McKenna NJ, Onate SA, Albrecht U, Wong J, Tsai SY, et al. A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell 1999; 97:17-27. (Pubitemid 29165886)
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 17-27
-
-
Lanz, R.B.1
McKenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.-J.7
O'Malley, B.W.8
-
8
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
DOI 10.1101/gad.1416106
-
Feng J, Bi C, Clark BS, Mady R, Shah P, Kohtz JD. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev 2006; 20:1470-1484 (Pubitemid 43830654)
-
(2006)
Genes and Development
, vol.20
, Issue.11
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
9
-
-
34250729138
-
Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
-
DOI 10.1016/j.cell.2007.05.022, PII S0092867407006599
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007; 129:1311-1323 (Pubitemid 46962090)
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
10
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008; 322:750-756
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
11
-
-
0034118382
-
The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1
-
Lyle R, Watanabe D, te Vruchte D, Lerchner W, Smrzka OW, Wutz A, et al. The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1. Nat Genet 2000; 25:19-21.
-
(2000)
Nat Genet
, vol.25
, pp. 19-21
-
-
Lyle, R.1
Watanabe, D.2
Te Vruchte, D.3
Lerchner, W.4
Smrzka, O.W.5
Wutz, A.6
-
12
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, Pauler FM, Ferguson-Smith AC, Feil R, et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008; 322:1717-1720
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
-
13
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
DOI 10.1038/nature06992, PII NATURE06992
-
Wang X, Arai S, Song X, Reichart D, Du K, Pascual G, et al. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 2008; 454:126-130 (Pubitemid 351934270)
-
(2008)
Nature
, vol.454
, Issue.7200
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
Pascual, G.6
Tempst, P.7
Rosenfeld, M.G.8
Glass, C.K.9
Kurokawa, R.10
-
14
-
-
0027227651
-
Fusion of CHOP to a novel RNA-binding protein in human myxoid liposarcoma
-
DOI 10.1038/363640a0
-
Crozat A, Aman P, Mandahl N, Ron D. Fusion of CHOP to a novel RNA-binding protein in human myxoid liposarcoma. Nature 1993; 363:640-644 (Pubitemid 23227627)
-
(1993)
Nature
, vol.363
, Issue.6430
, pp. 640-644
-
-
Crozat, A.1
Aman, P.2
Mandahl, N.3
Ron, D.4
-
15
-
-
0030746523
-
TLS (FUS) binds RNA in vivo and engages in nucleo-cytoplasmic shuttling
-
Zinszner H, Sok J, Immanuel D, Yin Y, Ron D. TLS (FUS) binds RNA in vivo and engages in nucleo-cytoplasmic shuttling. J Cell Sci 1997; 110:1741-1750 (Pubitemid 27352853)
-
(1997)
Journal of Cell Science
, vol.110
, Issue.15
, pp. 1741-1750
-
-
Zinszner, H.1
Sok, J.2
Immanuel, D.3
Yin, Y.4
Ron, D.5
-
16
-
-
0035918291
-
Involvement of the Pro-oncoprotein TLS (Translocated in Liposarcoma) in Nuclear Factor-kappaB p65-mediated Transcription as a Coactivator
-
DOI 10.1074/jbc.M011176200
-
Uranishi H, Tetsuka T, Yamashita M, Asamitsu K, Shimizu M, Itoh M, et al. Involvement of the pro-oncoprotein TLS (translocated in liposarcoma) in nuclear factor-kappaB p65-mediated transcription as a coactivator. J Biol Chem 2001; 276:13395-13401 (Pubitemid 37385273)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.16
, pp. 13395-13401
-
-
Uranishi, H.1
Tetsuka, T.2
Yamashita, M.3
Asamitsu, K.4
Shimizu, M.5
Itoh, M.6
Okamoto, T.7
-
17
-
-
0030894502
-
TLS-CHOP and the role of RNA-binding proteins in oncogenic transformation
-
Ron D. TLS-CHOP and the role of RNA-binding proteins in oncogenic transformation. Curr Top Microbiol Immunol 1997; 220:131-142 (Pubitemid 27141600)
-
(1997)
Current Topics in Microbiology and Immunology
, vol.220
, pp. 131-142
-
-
Ron, D.1
-
18
-
-
0033527059
-
Human POMp75 is identified as the pro-oncoprotein TLS/FUS: Both POMp75 and POMp100 DNA homologous pairing activities are associated to cell proliferation
-
DOI 10.1038/sj.onc.1203048
-
Bertrand P, Akhmedov AT, Delacote F, Durrbach A, Lopez BS. Human POMp75 is identified as the pro-oncoprotein TLS/FUS: both POMp75 and POMp100 DNA homologous pairing activities are associated to cell proliferation. Oncogene 1999; 18:4515-4521 (Pubitemid 29396659)
-
(1999)
Oncogene
, vol.18
, Issue.31
, pp. 4515-4521
-
-
Bertrand, P.1
Akhmedov, A.T.2
Delacote, F.3
Durrbach, A.4
Lopez, B.S.5
-
19
-
-
0027433708
-
Phosphorylated CREB binds specifically to the nuclear protein CBP
-
DOI 10.1038/365855a0
-
Chrivia JC, Kwok RP, Lamb N, Hagiwara M, Montminy MR, Goodman RH. Phosphorylated CREB binds specifically to the nuclear protein CBP. Nature 1993; 365:855-859 (Pubitemid 23341031)
-
(1993)
Nature
, vol.365
, Issue.6449
, pp. 855-859
-
-
Chrivia, J.C.1
Kwok, R.P.S.2
Lamb, N.3
Hagiwara, M.4
Montminy, M.R.5
Goodman, R.H.6
-
20
-
-
0032579289
-
Differential use of CREB binding protein-coactivator complexes
-
DOI 10.1126/science.279.5351.700
-
Kurokawa R, Kalafus D, Ogliastro MH, Kioussi C, Xu L, Torchia J, et al. Differential use of CREB binding protein-coactivator complexes. Science 1998; 279:700-703 (Pubitemid 28144548)
-
(1998)
Science
, vol.279
, Issue.5351
, pp. 700-703
-
-
Kurokawa, R.1
Kalafus, D.2
Ogliastro, M.-H.3
Kioussi, C.4
Xu, L.5
Torchia, J.6
Rosenfeld, M.G.7
Glass, C.K.8
-
21
-
-
0030606239
-
The transcriptional coactivators p300 and CBP are histone acetyltransferases
-
DOI 10.1016/S0092-8674(00)82001-2
-
Ogryzko VV, Schiltz RL, Russanova V, Howard BH, Nakatani Y. The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 1996; 87:953-959 (Pubitemid 26404293)
-
(1996)
Cell
, vol.87
, Issue.5
, pp. 953-959
-
-
Ogryzko, V.V.1
Schiltz, R.L.2
Russanova, V.3
Howard, B.H.4
Nakatani, Y.5
-
22
-
-
0030480969
-
The CBP co-activator is a histone acetyltransferase
-
Bannister AJ, Kouzarides T. The CBP co-activator is a histone acetyltransferase. Nature 1996; 384:641-643
-
(1996)
Nature
, vol.384
, pp. 641-643
-
-
Bannister, A.J.1
Kouzarides, T.2
-
23
-
-
0037064150
-
Coordinate regulation of transcription and splicing by steroid receptor coregulators
-
DOI 10.1126/science.1073734
-
Auboeuf D, Honig A, Berget SM, O'Malley BW. Coordinate regulation of transcription and splicing by steroid receptor coregulators. Science 2002; 298:416-419 (Pubitemid 35176350)
-
(2002)
Science
, vol.298
, Issue.5592
, pp. 416-419
-
-
Auboeuf, D.1
Honig, A.2
Berget, S.M.3
O'Malley, B.W.4
-
24
-
-
20744451863
-
A subset of nuclear receptor coregulators act as coupling proteins during synthesis and maturation of RNA transcripts
-
DOI 10.1128/MCB.25.13.5307-5316.2005
-
Auboeuf D, Dowhan DH, Dutertre M, Martin N, Berget SM, O'Malley BW. A subset of nuclear receptor coregulators act as coupling proteins during synthesis and maturation of RNA transcripts. Mol Cell Biol 2005; 25:5307-5316 (Pubitemid 40853570)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.13
, pp. 5307-5316
-
-
Auboeuf, D.1
Dowhan, D.H.2
Dutertre, M.3
Martin, N.4
Berget, S.M.5
O'Malley, B.W.6
-
25
-
-
0032549811
-
A cold-inducible coactivator of nuclear receptors linked to adaptive thermogenesis
-
DOI 10.1016/S0092-8674(00)81410-5
-
Puigserver P, Wu Z, Park CW, Graves R, Wright M, Spiegelman BM. A cold-inducible coactivator of nuclear receptors linked to adaptive thermogenesis. Cell 1998; 92:829-839 (Pubitemid 28155321)
-
(1998)
Cell
, vol.92
, Issue.6
, pp. 829-839
-
-
Puigserver, P.1
Wu, Z.2
Park, C.W.3
Graves, R.4
Wright, M.5
Spiegelman, B.M.6
-
26
-
-
0037326196
-
Peroxisome proliferator-activated receptor-gamma coactivator 1alpha (PGC-1alpha): Transcriptional coactivator and metabolic regulator
-
DOI 10.1210/er.2002-0012
-
Puigserver P, Spiegelman BM. Peroxisome proliferator-activated receptor-gamma coactivator 1alpha (PGC-1alpha): transcriptional coactivator and metabolic regulator. Endocr Rev 2003; 24:78-90. (Pubitemid 36223280)
-
(2003)
Endocrine Reviews
, vol.24
, Issue.1
, pp. 78-90
-
-
Puigserver, P.1
Spiegelman, B.M.2
|