메뉴 건너뛰기




Volumn 68, Issue 6, 2009, Pages 616-628

What was the set of ubiquitin and ubiquitin-like conjugating enzymes in the eukaryote common ancestor?

Author keywords

Homo sapiens; Molecular evolution; Phylogeny; Protein superfamily; Ubiquitin conjugating enzymes

Indexed keywords

ASPARAGINE; CYSTEINE; HISTIDINE; PROLINE; TRYPTOPHAN; UBIQUITIN; UBIQUITIN CONJUGATING ENZYME E2;

EID: 67449091213     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-009-9225-6     Document Type: Article
Times cited : (112)

References (45)
  • 1
    • 14744277777 scopus 로고    scopus 로고
    • Polyploidy and genome evolution in plants
    • DOI 10.1016/j.pbi.2005.01.001, Genome Studies and Molecular Genetics / Plant Biotechnology
    • KL Adams JF Wendel 2005 Polyploidy and genome evolution in plants Curr Opin Plant Biol 8 135 141 (Pubitemid 40323541)
    • (2005) Current Opinion in Plant Biology , vol.8 , Issue.2 , pp. 135-141
    • Adams, K.L.1    Wendel, J.F.2
  • 5
    • 42649124278 scopus 로고    scopus 로고
    • Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation
    • AM Burroughs M Jaffee LM Iyer L Aravind 2008 Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation J Struct Biol 162 205 218
    • (2008) J Struct Biol , vol.162 , pp. 205-218
    • Burroughs, A.M.1    Jaffee, M.2    Iyer, L.M.3    Aravind, L.4
  • 6
  • 7
    • 33644859083 scopus 로고    scopus 로고
    • The ubiquitin proteolytic system: From a vague idea, through basic mechanisms, and onto human diseases and drug targeting
    • A Ciechanover 2006 The ubiquitin proteolytic system: From a vague idea, through basic mechanisms, and onto human diseases and drug targeting Neurology 66 Suppl S7 S19
    • (2006) Neurology , vol.66 , Issue.SUPPL
    • Ciechanover, A.1
  • 8
    • 33745051156 scopus 로고    scopus 로고
    • Ubiquitin-conjugating enzyme genes in Oesophagostomum dentatum
    • DOI 10.1007/s00436-005-0111-x
    • PA Cottee YG Abs El-osta AJ Nisbet RB Gasser 2006 Ubiquitin-conjugating enzyme genes in Oesophagostomum dentatum Parasitol Res 99 119 125 (Pubitemid 43873256)
    • (2006) Parasitology Research , vol.99 , Issue.2 , pp. 119-125
    • Cottee, P.A.1    Abs El-Osta, Y.G.2    Nisbet, A.J.3    Gasser, R.B.4
  • 9
    • 27844438226 scopus 로고    scopus 로고
    • Genome-scale evidence of the nematode-arthropod clade
    • H Dopazo J Dopazo 2005 Genome-scale evidence of the nematode-arthropod clade Genome Biol 6 R41
    • (2005) Genome Biol , vol.6 , pp. 41
    • Dopazo, H.1    Dopazo, J.2
  • 10
    • 0030932280 scopus 로고    scopus 로고
    • Converting amino acid alignment scores into measures of evolutionary time: A simulation study of various relationships
    • DOI 10.1007/PL00006155
    • DF Feng RF Doolittle 1997 Converting amino acid alignment scores into measures of evolutionary time: a simulation study of various relationships J Mol Evol 44 361 370 (Pubitemid 27161332)
    • (1997) Journal of Molecular Evolution , vol.44 , Issue.4 , pp. 361-370
    • Feng, D.-F.1    Doolittle, R.F.2
  • 11
    • 0032168745 scopus 로고    scopus 로고
    • Structure of ubiquitin-conjugating enzyme 9 displays significant differences with other ubiquitin-conjugating enzymes which may reflect its specificity for sumo rather than ubiquitin
    • DOI 10.1107/S0907444998002480
    • MF Giraud JM Desterro JH Naismith 1998 Structure of ubiquitin-conjugating enzyme 9 displays significant differences with other ubiquitin-conjugating enzymes which may reflect its specificity for sumo rather than ubiquitin Acta Crystallogr D Biol Crystallogr 54 891 898 (Pubitemid 28443601)
    • (1998) Acta Crystallographica Section D: Biological Crystallography , vol.54 , Issue.5 , pp. 891-898
    • Giraud, M.-F.1    Desterro, J.M.P.2    Naismith, J.H.3
  • 12
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • TA Hall 1999 BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl Acids Symp Ser 41 95 98
    • (1999) Nucl Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 33745810231 scopus 로고    scopus 로고
    • Phylogenetic estimation under codon models can be biased by codon usage heterogeneity
    • DOI 10.1016/j.ympev.2006.03.020, PII S1055790306001035
    • Y Inagaki AJ Roger 2006 Phylogenetic estimation under codon models can be biased by codon usage heterogeneity Mol Phylogenet Evol 40 428 434 (Pubitemid 44038593)
    • (2006) Molecular Phylogenetics and Evolution , vol.40 , Issue.2 , pp. 428-434
    • Inagaki, Y.1    Roger, A.J.2
  • 14
    • 33747219426 scopus 로고    scopus 로고
    • The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains
    • LM Iyer AM Burroughs L Aravind 2006 The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains Genome Biol 7 R60
    • (2006) Genome Biol , vol.7 , pp. 60
    • Iyer, L.M.1    Burroughs, A.M.2    Aravind, L.3
  • 16
    • 3442900482 scopus 로고    scopus 로고
    • Human disorders of ubiquitination and proteasomal degradation
    • DOI 10.1097/01.mop.0000133634.79661.cd
    • YH Jiang AL Beaudet 2004 Human disorders of ubiquitination and proteasomal degradation Curr Opin Pediatr 16 419 426 (Pubitemid 39006491)
    • (2004) Current Opinion in Pediatrics , vol.16 , Issue.4 , pp. 419-426
    • Jiang, Y.-H.1    Beaudet, A.L.2
  • 17
    • 18844465487 scopus 로고    scopus 로고
    • Functional and phylogenetic analysis of the ubiquitylation system in Caenorhabditis elegans: Ubiquitin-conjugating enzymes, ubiquitin-activating enzymes, and ubiquitin-like proteins
    • research0002.1-research0002.15 [epub]
    • Jones D, Crowe E, Stevens TA, Candido EP (2001) Functional and phylogenetic analysis of the ubiquitylation system in Caenorhabditis elegans: Ubiquitin-conjugating enzymes, ubiquitin-activating enzymes, and ubiquitin-like proteins. Genome Biol 3:research0002.1-research0002.15 [epub]
    • (2001) Genome Biol , vol.3
    • Jones, D.1    Crowe, E.2    Stevens, T.A.3    Candido, E.P.4
  • 18
    • 0032127179 scopus 로고    scopus 로고
    • Identification, expression, and chromosomal localization of ubiquitin conjugating enzyme 7 (UBE2G2), a human homologue of the Saccharomyces cerevisiae Ubc7 gene
    • DOI 10.1006/geno.1998.5263
    • N Katsanis EM Fisher 1998 Identification, expression, and chromosomal localization of ubiquitin conjugating enzyme 7 (UBE2G2), a human homologue of the Saccharomyces cerevisiae ubc7 gene Genomics 51 128 131 (Pubitemid 28373381)
    • (1998) Genomics , vol.51 , Issue.1 , pp. 128-131
    • Katsanis, N.1    Fisher, E.M.C.2
  • 19
    • 28444488937 scopus 로고    scopus 로고
    • C Elegans Cell Cycles: Invariance and Stem Cell Divisions
    • ET Kipreos 2005 C elegans cell cycles: Invariance and stem cell divisions. Nat Rev Mol Cell Biol 6 766 776
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 766-776
    • Kipreos, E.T.1
  • 20
    • 0033525589 scopus 로고    scopus 로고
    • A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly
    • M Koegl T Hoppe S Schlenker HD Ulrich TU Mayer S Jentsch 1999 A novel ubiquitination factor, E4, is involved in multiubiquitin chain assembly Cell 96 635 644 (Pubitemid 29122806)
    • (1999) Cell , vol.96 , Issue.5 , pp. 635-644
    • Koegl, M.1    Hoppe, T.2    Schlenker, S.3    Ulrich, H.D.4    Mayer, T.U.5    Jentsch, S.6
  • 21
    • 33644993733 scopus 로고    scopus 로고
    • Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis
    • DOI 10.1104/pp.105.067983
    • E Kraft S Stone L Ma N Su Y Gao O Lau X Deng J Callis 2005 Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis Plant Physiol 139 1597 1611 (Pubitemid 43899804)
    • (2005) Plant Physiology , vol.139 , Issue.4 , pp. 1597-1611
    • Kraft, E.1    Stone, S.L.2    Ma, L.3    Su, N.4    Gao, Y.5    Lau, O.-S.6    Deng, X.-W.7    Callis, J.8
  • 22
    • 0034673565 scopus 로고    scopus 로고
    • Identification of a family of noncanonical ubiquitin-conjugating enzymes structurally related to yeast UBC6
    • DOI 10.1006/bbrc.2000.2302
    • D Lester C Farquharson G Russell B Houston 2000 Identification of a family of noncanonical ubiquitin-conjugating enzymes structurally related to yeast UBC6 Biochem Biophys Res Commun 269 474 480 (Pubitemid 30440325)
    • (2000) Biochemical and Biophysical Research Communications , vol.269 , Issue.2 , pp. 474-480
    • Lester, D.1    Farquharson, C.2    Russell, G.3    Houston, B.4
  • 23
    • 27644499059 scopus 로고    scopus 로고
    • Expression, purification, and properties of the Ubc4/5 family of E2 enzymes
    • DOI 10.1016/S0076-6879(05)98006-3, PII S0076687905980063, Ubiquitin and Protein Degradation (Part A)
    • KL Lorick JP Jensen AM Weissman 2005 Expression, purification, and properties of the Ubc4/5 family of E2 enzymes Methods Enzymol 398 54 68 (Pubitemid 41578874)
    • (2005) Methods in Enzymology , vol.398 , pp. 54-68
    • Lorick, K.L.1    Jensen, J.P.2    Weissman, A.M.3
  • 24
    • 33645875606 scopus 로고    scopus 로고
    • Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons
    • EH Margulies CW Chen ED Green 2006 Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons Trends Genet 22 187 193
    • (2006) Trends Genet , vol.22 , pp. 187-193
    • Margulies, E.H.1    Chen, C.W.2    Green, E.D.3
  • 25
    • 0035174874 scopus 로고    scopus 로고
    • Identification of molecular determinants required for interaction of ubiquitin-conjugating enzymes and RING finger proteins
    • DOI 10.1046/j.0014-2956.2001.02541.x
    • G Martinez-Noel U Müller K Harbers 2001 Identification of molecular determinants required for interaction of ubiquitin-conjugating enzymes and RING finger proteins Eur J Biochem 268 5912 5919 (Pubitemid 33079327)
    • (2001) European Journal of Biochemistry , vol.268 , Issue.22 , pp. 5912-5919
    • Martinez-Noel, G.1    Muller, U.2    Harbers, K.3
  • 26
    • 33747609804 scopus 로고    scopus 로고
    • Demonstration of ubiquitin thiolester formation of UBE2Q2 (UBCi), a novel ubiquitin-conjugating enzyme with implantation site-specific expression
    • DOI 10.1095/biolreprod.106.051458
    • MH Melner AL Haas JM Klein AR Brash WE Boeglin SK Nagdas VP Winfrey GE Olson 2006 Demonstration of ubiquitin thiolester formation of UBE2Q2 (UBCi), a novel ubiquitin-conjugating enzyme with implantation site-specific expression Biol Reprod 75 395 406 (Pubitemid 44268074)
    • (2006) Biology of Reproduction , vol.75 , Issue.3 , pp. 395-406
    • Melner, M.H.1    Haas, A.L.2    Klein, J.M.3    Brash, A.R.4    Boeglin, W.E.5    NagDas, S.K.6    Winfrey, V.P.7    Olson, G.E.8
  • 27
    • 0031877893 scopus 로고    scopus 로고
    • Large-scale taxonomic profiling of eukaryotic model organisms: A comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes
    • AR Mushegian JR Garey J Martin LX Liu 1998 Large-scale taxonomic profiling of eukaryotic model organisms: A comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes Genome Res 8 590 598 (Pubitemid 28334134)
    • (1998) Genome Research , vol.8 , Issue.6 , pp. 590-598
    • Mushegian, A.R.1    Garey, J.R.2    Martin, J.3    Liu, L.X.4
  • 30
    • 0034915764 scopus 로고    scopus 로고
    • Mechanisms underlying ubiquitination [review]
    • CM Pickart 2001 Mechanisms underlying ubiquitination [review] Annu Rev Biochem 70 503 533
    • (2001) Annu Rev Biochem , vol.70 , pp. 503-533
    • Pickart, C.M.1
  • 31
    • 0842303313 scopus 로고    scopus 로고
    • Back to the Future with Ubiquitin
    • DOI 10.1016/S0092-8674(03)01074-2
    • CM Pickart 2004 Back to the future with ubiquitin Cell 116 181 190 (Pubitemid 38167311)
    • (2004) Cell , vol.116 , Issue.2 , pp. 181-190
    • Pickart, C.M.1
  • 32
    • 0027431477 scopus 로고
    • Cloning of the human homolog of the CDC34 cell cycle gene by complementation in yeast
    • SE Plon KA Leppig HN Do M Groudine 1993 Cloning of the human homolog of the CDC34 cell cycle gene by complementation in yeast Proc Natl Acad Sci USA 90 10484 10488
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 10484-10488
    • Plon, S.E.1    Leppig, K.A.2    Do, H.N.3    Groudine, M.4
  • 34
    • 0030772385 scopus 로고    scopus 로고
    • Crystal structure of murine/human Ubc9 provides insight into the variability of the ubiquitin-conjugating system
    • DOI 10.1074/jbc.272.34.21381
    • H Tong G Hateboer A Perrakis R Bernards TK Sixma 1997 Crystal structure of murine/human Ubc9 provides insight into the variability of the ubiquitin-conjugating system J Biol Chem 272 21381 21387 (Pubitemid 27374007)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.34 , pp. 21381-21387
    • Tong, H.1    Hateboer, G.2    Perrakis, A.3    Bernards, R.4    Sixma, T.K.5
  • 36
    • 0036134749 scopus 로고    scopus 로고
    • A homologue of CROC-1 in a ciliated protist (Sterkiella histriomuscorum) testifies to the ancient origin of the ubiquitin-conjugating enzyme variant family
    • E Villalobo L Morin C Moch R Lescasse M Hanna W Xiao A Baroin-Tourancheau 2002 A homologue of CROC-1 in a ciliated protist (Sterkiella histriomuscorum) testifies to the ancient origin of the ubiquitin-conjugating enzyme variant family Mol Biol Evol 19 39 48 (Pubitemid 34008045)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.1 , pp. 39-48
    • Villalobo, E.1    Morin, L.2    Moch, C.3    Lescasse, R.4    Hanna, M.5    Xiao, W.6    Baroin-Tourancheau, A.7
  • 37
    • 0029838606 scopus 로고    scopus 로고
    • Molecular cloning of UBE2G, encoding a human skeletal muscle-specific ubiquitin-conjugating enzyme homologous to UBC7 of C. elegans
    • TK Watanabe A Kawai T Fujiwara H Maekawa Y Hirai Y Nakamura E Takahashi 1996 Molecular cloning of UBE2G, encoding a human skeletal muscle-specific ubiquitin-conjugating enzyme homologous to UBC7 of C. elegans Cytogenet Cell Genet 74 146 148 (Pubitemid 26336509)
    • (1996) Cytogenetics and Cell Genetics , vol.74 , Issue.1-2 , pp. 146-148
    • Watanabe, T.K.1    Kawai, A.2    Fujiwara, T.3    Maekawa, H.4    Hirai, Y.5    Nakamura, Y.6    Takahashi, E.7
  • 38
  • 39
    • 0030660073 scopus 로고    scopus 로고
    • Regulation of ubiquitin-dependent processes by deubiquitinating enzymes
    • K Wilkinson 1997 Regulation of ubiquitin-dependent processes by deubiquitinating enzymes FASEB J 11 1245 1256 (Pubitemid 27527888)
    • (1997) FASEB Journal , vol.11 , Issue.14 , pp. 1245-1256
    • Wilkinson, K.D.1
  • 40
    • 4444314569 scopus 로고    scopus 로고
    • Determinants of functionality in the ubiquitin conjugating enzyme family
    • DOI 10.1016/j.str.2004.06.017, PII S0969212604002515
    • PJ Winn TL Religa JN Battey A Banerjee RC Wade 2004 Determinants of functionality in the ubiquitin conjugating enzyme family Structure 12 1563 1574 (Pubitemid 39200510)
    • (2004) Structure , vol.12 , Issue.9 , pp. 1563-1574
    • Winn, P.J.1    Religa, T.L.2    Battey, J.N.D.3    Banerjee, A.4    Wade, R.C.5
  • 43
    • 0345874732 scopus 로고    scopus 로고
    • Coelomata and not ecdysozoa: Evidence from genome-wide phylogenetic analysis
    • DOI 10.1101/gr.1347404
    • YI Wolf IB Rogozin EV Koonin 2004 Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis Genome Res 14 29 36 (Pubitemid 38088522)
    • (2004) Genome Research , vol.14 , Issue.1 , pp. 29-36
    • Wolf, Y.I.1    Rogozin, I.B.2    Koonin, E.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.