메뉴 건너뛰기




Volumn 44, Issue 4, 1997, Pages 361-370

Converting amino acid alignment scores into measures of evolutionary time: A simulation study of various relationships

Author keywords

Alignment scores; Distance measures; Substitution tables

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; EVOLUTION; PROTEIN SYNTHESIS;

EID: 0030932280     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006155     Document Type: Article
Times cited : (25)

References (24)
  • 1
    • 0026553672 scopus 로고
    • PROSITE: A dictionary of sites and patterns in proteins
    • Bairoch A (1992) PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res 20:2013-2018
    • (1992) Nucleic Acids Res , vol.20 , pp. 2013-2018
    • Bairoch, A.1
  • 2
    • 0002929101 scopus 로고
    • A model of evolutionary change in proteins
    • Dayhoff MO (ed). Natl Biomed Res Found, Washington, DC
    • Dayhoff MO, Eck RV, Park CM (1972) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence and structure, vol 5. Natl Biomed Res Found, Washington, DC, pp 89-103
    • (1972) Atlas of Protein Sequence and Structure , vol.5 , pp. 89-103
    • Dayhoff, M.O.1    Eck, R.V.2    Park, C.M.3
  • 3
    • 0016213327 scopus 로고
    • Inferences from protein and nucleic acid sequences: Early molecular evolution, divergence of kingdoms and rates of change
    • Dayhoff MO, Barker WC, McLaughlin PJ (1974) Inferences from protein and nucleic acid sequences: early molecular evolution, divergence of kingdoms and rates of change. Orig Life 5:311-330
    • (1974) Orig Life , vol.5 , pp. 311-330
    • Dayhoff, M.O.1    Barker, W.C.2    McLaughlin, P.J.3
  • 4
    • 0015162882 scopus 로고
    • The structure of cytochrome c and the rates of molecular evolution
    • Dickerson RE (1971) The structure of cytochrome c and the rates of molecular evolution. J Mol Evol 1:26-45
    • (1971) J Mol Evol , vol.1 , pp. 26-45
    • Dickerson, R.E.1
  • 5
    • 0002636295 scopus 로고
    • Neurath H, Hill RE (eds) Chap 1. 2nd ed. Academic Press, New York
    • Doolittle RE (1979) In: Neurath H, Hill RE (eds) The proteins, vol 14, Chap 1. 2nd ed. Academic Press, New York, pp 1-118
    • (1979) The Proteins , vol.14 , pp. 1-118
    • Doolittle, R.E.1
  • 6
    • 0024418527 scopus 로고
    • Estimating the prokaryote-eukaryote divergence time from protein sequences
    • Fernholm B, Bremer K, Jornvall H (eds) Elsevier Science, Amsterdam
    • Doolittle RF, Anderson KL, Feng D-F (1989) Estimating the prokaryote-eukaryote divergence time from protein sequences. In: Fernholm B, Bremer K, Jornvall H (eds) The hierarchy of life. Elsevier Science, Amsterdam, pp 73-85
    • (1989) The Hierarchy of Life , pp. 73-85
    • Doolittle, R.F.1    Anderson, K.L.2    Feng, D.-F.3
  • 7
    • 0030023247 scopus 로고    scopus 로고
    • Determining divergence times of the major kingdoms of living organisms with a protein clock
    • Doolittle RF, Feng D-F, Tsang S, Cho G, Little E (1996) Determining divergence times of the major kingdoms of living organisms with a protein clock. Science 271:470-476
    • (1996) Science , vol.271 , pp. 470-476
    • Doolittle, R.F.1    Feng, D.-F.2    Tsang, S.3    Cho, G.4    Little, E.5
  • 8
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng D-F, Doolittle RF (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25:351-360
    • (1987) J Mol Evol , vol.25 , pp. 351-360
    • Feng, D.-F.1    Doolittle, R.F.2
  • 9
    • 0025025261 scopus 로고
    • Progressive alignment and phylogenetic tree construction and protein sequences
    • Feng D-F, Doolittle RF (1990) Progressive alignment and phylogenetic tree construction and protein sequences. Methods Enzymol 183:375-387
    • (1990) Methods Enzymol , vol.183 , pp. 375-387
    • Feng, D.-F.1    Doolittle, R.F.2
  • 10
    • 0029935866 scopus 로고    scopus 로고
    • Progressive alignment of amino acid sequences and the construction of phylogenetic trees from them
    • Feng D-F, Doolittle RF (1996) Progressive alignment of amino acid sequences and the construction of phylogenetic trees from them. Methods Enzymol 266:368-382
    • (1996) Methods Enzymol , vol.266 , pp. 368-382
    • Feng, D.-F.1    Doolittle, R.F.2
  • 11
    • 0021712450 scopus 로고
    • Aligning amino acid sequences: Comparison of commonly used methods
    • Feng D-F, Johnson MS, Doolittle RF (1985) Aligning amino acid sequences: comparison of commonly used methods. J Mol Evol 21:112-125
    • (1985) J Mol Evol , vol.21 , pp. 112-125
    • Feng, D.-F.1    Johnson, M.S.2    Doolittle, R.F.3
  • 12
    • 0019761163 scopus 로고
    • The old REH theory remains unsatisfactory and the new REH theory is problematical - A reply to Holmquist and Jukes
    • Fitch WM (1981) The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to Holmquist and Jukes. J Mol Evol 18:60-67
    • (1981) J Mol Evol , vol.18 , pp. 60-67
    • Fitch, W.M.1
  • 14
    • 0028818963 scopus 로고
    • Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites
    • Grishin NV (1995) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 41:675-679
    • (1995) J Mol Evol , vol.41 , pp. 675-679
    • Grishin, N.V.1
  • 15
    • 0027317580 scopus 로고
    • Performance evaluation of amino acid substitution matrices
    • Henikoff S, Henikoff JG (1993) Performance evaluation of amino acid substitution matrices. Proteins Struct Function Genet 17:49-61
    • (1993) Proteins Struct Function Genet , vol.17 , pp. 49-61
    • Henikoff, S.1    Henikoff, J.G.2
  • 16
    • 0019754604 scopus 로고
    • The current status of REH theory
    • Holmquist R, Jukes TH (1981) The current status of REH theory. J Mol Evol 18:47-59
    • (1981) J Mol Evol , vol.18 , pp. 47-59
    • Holmquist, R.1    Jukes, T.H.2
  • 18
    • 0023222857 scopus 로고
    • Accumulation pattern of amino acid substitutions in protein evolution
    • Kunisawa T, Horimoto K, Otsuka J (1987) Accumulation pattern of amino acid substitutions in protein evolution. J Mol Evol 24:357-365
    • (1987) J Mol Evol , vol.24 , pp. 357-365
    • Kunisawa, T.1    Horimoto, K.2    Otsuka, J.3
  • 19
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequences of two proteins
    • Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequences of two proteins. J Mol Biol 48:443-453
    • (1970) J Mol Biol , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 21
    • 0028338820 scopus 로고
    • Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites
    • Ota T, Nei M (1994) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 38:642-643
    • (1994) J Mol Evol , vol.38 , pp. 642-643
    • Ota, T.1    Nei, M.2
  • 22
    • 0000507749 scopus 로고
    • Matrices for detecting distant relationships
    • Dayhoff MO (ed) National Biomedical Research Foundation, Washington
    • Schwartz RM, Dayhoff MO (1978) Matrices for detecting distant relationships. In: Dayhoff MO (ed) Atlas of protein sequence and structure, vol 5, Suppl 3. National Biomedical Research Foundation, Washington, pp 353-358
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.3 SUPPL. , pp. 353-358
    • Schwartz, R.M.1    Dayhoff, M.O.2
  • 23
    • 0015219691 scopus 로고
    • Fitting discrete probability distribution to evolutionary events
    • Uzzell T, Corbin KW (1971) Fitting discrete probability distribution to evolutionary events. Science 172:1089-1096
    • (1971) Science , vol.172 , pp. 1089-1096
    • Uzzell, T.1    Corbin, K.W.2
  • 24
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • Bryson V, Vogel HJ (eds) Academic Press, New York
    • Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJ (eds) Evolving genes and proteins. Academic Press, New York, pp 97-166
    • (1965) Evolving Genes and Proteins , pp. 97-166
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.