-
1
-
-
0344153727
-
Genomic regulatory regions: insights from comparative sequence analysis
-
Cooper G.M., and Sidow A. Genomic regulatory regions: insights from comparative sequence analysis. Curr. Opin. Genet. Dev. 13 (2003) 604-610
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 604-610
-
-
Cooper, G.M.1
Sidow, A.2
-
2
-
-
3142740663
-
-
Hardison, R.C. (2003) Comparative genomics. PLoS Biol. DOI:10.1371/journal.pbio.0000058 (http://biology.plosjournals.org/)
-
-
-
-
3
-
-
0348184969
-
Comparative genomic analysis as a tool for biological discovery
-
Nobrega M.A., and Pennacchio L.A. Comparative genomic analysis as a tool for biological discovery. J. Physiol. 554 (2004) 31-39
-
(2004)
J. Physiol.
, vol.554
, pp. 31-39
-
-
Nobrega, M.A.1
Pennacchio, L.A.2
-
4
-
-
0037380723
-
Comparative genomics: genome-wide analysis in metazoan eukaryotes
-
Ureta-Vidal A., et al. Comparative genomics: genome-wide analysis in metazoan eukaryotes. Nat. Rev. Genet. 4 (2003) 251-262
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 251-262
-
-
Ureta-Vidal, A.1
-
6
-
-
3042740671
-
Comparative genomics at the vertebrate extremes
-
Boffelli D., et al. Comparative genomics at the vertebrate extremes. Nat. Rev. Genet. 5 (2004) 456-465
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 456-465
-
-
Boffelli, D.1
-
7
-
-
17244379179
-
The many faces of sequence alignment
-
Batzoglou S. The many faces of sequence alignment. Brief. Bioinform. 6 (2005) 6-22
-
(2005)
Brief. Bioinform.
, vol.6
, pp. 6-22
-
-
Batzoglou, S.1
-
8
-
-
0035011227
-
Comparison of genomic DNA sequences: solved and unsolved problems
-
Miller W. Comparison of genomic DNA sequences: solved and unsolved problems. Bioinformatics 17 (2001) 391-397
-
(2001)
Bioinformatics
, vol.17
, pp. 391-397
-
-
Miller, W.1
-
9
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa M., et al. Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotechnol. 23 (2005) 137-144
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 137-144
-
-
Tompa, M.1
-
10
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz S., et al. Human-mouse alignments with BLASTZ. Genome Res. 13 (2003) 103-107
-
(2003)
Genome Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
-
11
-
-
0037270315
-
AVID: A global alignment program
-
Bray N., et al. AVID: A global alignment program. Genome Res. 13 (2003) 97-102
-
(2003)
Genome Res.
, vol.13
, pp. 97-102
-
-
Bray, N.1
-
12
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
International Mouse Genome Sequencing Consortium
-
International Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature 420 (2002) 520-562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
13
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Rat Genome Sequencing Project Consortium
-
Rat Genome Sequencing Project Consortium. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428 (2004) 493-521
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
-
14
-
-
20044362752
-
Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes
-
Margulies E.H., et al. Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 3354-3359
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3354-3359
-
-
Margulies, E.H.1
-
15
-
-
0037398368
-
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
-
Brudno M., et al. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res. 13 (2003) 721-731
-
(2003)
Genome Res.
, vol.13
, pp. 721-731
-
-
Brudno, M.1
-
16
-
-
1842667852
-
MAVID: constrained ancestral alignment of multiple sequences
-
Bray N., and Pachter L. MAVID: constrained ancestral alignment of multiple sequences. Genome Res. 14 (2004) 693-699
-
(2004)
Genome Res.
, vol.14
, pp. 693-699
-
-
Bray, N.1
Pachter, L.2
-
17
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M., et al. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14 (2004) 708-715
-
(2004)
Genome Res.
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
-
18
-
-
20144388947
-
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing
-
Margulies E.H., et al. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 4795-4800
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 4795-4800
-
-
Margulies, E.H.1
-
19
-
-
0037250168
-
The UCSC Genome Browser Database
-
Karolchik D., et al. The UCSC Genome Browser Database. Nucleic Acids Res. 31 (2003) 51-54
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
-
20
-
-
0036079158
-
The human genome browser at UCSC
-
Kent W.J., et al. The human genome browser at UCSC. Genome Res. 12 (2002) 996-1006
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
21
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas J.W., et al. Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424 (2003) 788-793
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
-
22
-
-
7444260846
-
The ENCODE (ENCyclopedia Of DNA Elements) Project
-
ENCODE Project Consortium
-
ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306 (2004) 636-640
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
23
-
-
10744222156
-
Identification and characterization of multi-species conserved sequences
-
Margulies E.H., et al. Identification and characterization of multi-species conserved sequences. Genome Res. 13 (2003) 2507-2518
-
(2003)
Genome Res.
, vol.13
, pp. 2507-2518
-
-
Margulies, E.H.1
-
24
-
-
1542510106
-
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
-
Siepel A., and Haussler D. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol. Biol. Evol. 21 (2004) 468-488
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 468-488
-
-
Siepel, A.1
Haussler, D.2
-
25
-
-
0036935568
-
PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences
-
Elnitski L., et al. PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. Genomics 80 (2002) 681-690
-
(2002)
Genomics
, vol.80
, pp. 681-690
-
-
Elnitski, L.1
|