Chromatin remodeling mediated by Drosophila GAGA factor and ISWI activates fushi tarazu gene transcription in vitro

Molecular and Cellular Biology

Volumn 18, Issue 5, 1998, Pages 2455-2461

  Okada, Masahiro ^b   Hirose, Susumu ^a  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; CHROMATIN STRUCTURE; CONTROLLED STUDY; DROSOPHILA; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; TRANSCRIPTION REGULATION;

DROSOPHILA;

EID: 0031953828     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.5.2455     Document Type: Article

References (46)

1. Almer, A., and W. Horz. 1986. Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast. EMBO J. 5:2681-2687.
2. Becker, P. B., and C. Wu. 1992. Cell-tree system for assembly of transcriptionally repressed chromatin from Drosophila embryos. Mol. Cell. Biol. 12: 2241-2249.
3. Bhat, K. M., G. Farkas, F. Karch, H. Gyurkovics, and J. Gausz. 1996. The GAGA factor is required in the early Drosophila embryo not only for transcriptional regulation but also for nuclear division. Development 122:1113-1124.
4. Brownell, J. E., J. Zhou, T. Ranalli, R. Kobayashi, D. G. Edmondson, S. Y. Roth, and C. D. Allis. 1996. Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84:843-851.
5. Cairns, B. R., Y. Lorch, Y. Li, M. Zhang, L. Lacomis, H. Erdjument-Bromage, P. Tempst, J. Du, B. Laurent, and R. D. Kornberg. 1996. RSC, an essential abundant chromatin-remodeling complex. Cell 87:1249-1260.
6. Carroll, S. B., and M. P. Scott. 1985. Localization of the fushi tarazu protein during Drosophila embryogenesis. Cell 43:47-57.
7. Cote, J., J. Quinn, J. L. Workman, and C. L. Peterson. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265:53-60.
8. Croston, G. E., L. A. Kerrigan, L. M. Lira, D. R. Marshak, and J. T. Kadonaga. 1991. Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription. Science 251:643-649.
9. Dingwall, A. K., S. J. Beek, C. M. McCallum, J. W. Tamkun, G. V. Kalpana, S. P. Goff, and M. P. Scott. 1995. The Drosophila snr1 and brm proteins are related to yeast SWI/SNF proteins and are components of a large protein complex. Mol. Biol. Cell. 6:777-791.
10. Elfring, L. K., R. Deuring, C. M. McCallum, C. L. Peterson, and J. W. Tamkun. 1994. Identification and characterization of Drosophila relatives of the yeast transcriptional activator SNF2/SWI2. Mol. Cell. Biol. 14:2225-2234.
11. Farkas, G., J. Gausz, M. Galloni, G. Reuter, H. Gyurkovics, and F. Karch. 1994. The Trithorax-like gene encodes the Drosophila GAGA factor. Nature 371:806-808.
12. Felsenfeld, G. 1992. Chromatin as an essential part of the transcriptional mechanism. Nature 355:219-223.
13. Granok, H., B. A. Leibovitch, C. D. Shaffer, and S. C. R. Elgin. 1995. Ga-ga over GAGA factor. Curr. Biol. 5:238-241.
14. Hafen, E., A. Kuroiwa, and W. J. Gehring. 1984. Spatial distribution of transcripts from the segmentation gene fushi tarazu during Drosophila embryonic development. Cell 37:833-841.
15. Hiromi, Y., A. Kuroiwa, and W. J. Gehring. 1985. Control elements of the Drosophila segmentation gene fushi tarazu. Cell 43:603-613.
16. Hirose, S., M. Tsuda, and Y. Suzuki. 1985. Enhanced transcription of fibroin gene in vitro on covalently closed circular templates. J. Biol. Chem. 260: 10557-10562.
17. Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370: 481-485.
18. Ko, T., M. Bulger, M. J. Pazin, R. Kobayashi, and J. T. Kadonaga. 1997. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90:145-155.
19. Kerrigan, L. A., G. E. Croston, L. M. Lira, and J. T. Kadonaga. 1991. Sequence-specific transcriptional antirepression of the Drosophila Kruppel gene by the GAGA factor. J. Biol. Chem. 266:574-582.
20. Kunkel, T. A. 1985. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA 82:488-492.
21. Kwon, H., A. N. Imbalzano, P. A. Khavari, R. E. Kingston, and M. R. Green. 1994. Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370:477-481.
22. Laurent, B. C., M. A. Treitel, and M. Carlson. 1991. Functional interdependence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation. Proc. Natl. Acad. Sci. USA 88:2687-2691.
23. Li, F.-Q., H. Ueda, and S. Hirose. 1994. Mediators of activation of fushi tarazu gene transcription by BmFTZ-F1. Mol. Cell. Biol. 14:3013-3021.
24. Li, F.-Q., K. Takemaru, M. Goto, H. Ueda, H. Handa, and S. Hirose. 1997. Transcriptional activation through interaction of MBF2 with TFIIA. Genes Cells 2:143-153.
25. Mizzen, C. A., X. J. Yang, T. Kokubo, J. E. Brownell, A. J. Bannister, T. Owen-Hughes, J. Workman, S. L. Berger, T. Kouzavides, Y. Nakatani, and C. D. Allis. 1996. The TAFII250 subunit of TFIID has histone acetyltransferase activity. Cell 87:1261-1270.
26. Ogryzko, V. V., R. L. Schiltz, V. Russanova, B. H. Howard, and Y. Nakatani. 1996. The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 87:953-959.
27. Orland, V., and R. Paro. 1995. Chromatin multiprotein complexes involved in the maintenance of transcription patterns. Curr. Opin. Genet. Dev. 5:174-179.
28. Pazin, M. J., P. L. Sheridan, K. Cannon, Z. Cao, J. G. Keck, J. T. Kadonaga, and K. A. Jones. 1996. NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes Dev. 10:37-49.
29. Sandaltzopoulos, R., C. Mitchelmore, E. Bonte, G. Wall, and P. B. Becker. 1995. Dual regulation of the Drosophila hsp26 promoter in vitro. Nucleic Acids Res. 23:2479-2487.
30. Shopland, L. S., K. Hirayoshi, M. Fernandes, and J. T. Lis. 1995. HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor. TFIID, and RNA polymerase II binding sites. Genes Dev. 9:2756-2769.
31. Simon, R. H., and G. Felsenfeld. 1979. A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite. Nucleic Acids Res. 6:689-696.
32. Soeller, W. C., C. E. Oh, and T. B. Kornberg. 1993. Isolation of cDNAs encoding the Drosophila GAGA transcription factor. Mol. Cell. Biol. 13: 7961-7970.
33. Stein, A. 1989. Reconstitution of chromatin from purified components. Methods Enzymol. 170:585-603.
34. Struhl, K. 1996. Chromatin structure and RNA polymerase II connection: implications for transcription. Cell 84:179-182.
35. Takemaru, K., F.-Q. Li, H. Ueda, and S. Hirose. 1997. Multiprotein bridging factor 1 (MBF1) is an evolutionary conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein. Proc. Natl. Acad. Sci. USA 94:7251-7256.
36. Tamkun, J. T., R. Deuring, M. P. Scott, M. Kissinger, A. M. Pattatucci, T. C. Kaufman, and J. A. Kennison. 1992. Brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68:561-572.
37. Topol, J., C. R. Dearolf, K. Prakash, and C. S. Parker. 1991. Synthetic oligonucleotides recreate Drosophila fushi tarazu zebra-stripe expression. Genes Dev. 5:855-867.
38. Tsai, C., and J. P. Gergen. 1994. Gap gene properties of the pair-rule gene runt during Drosophila segmentation. Development 120:1671-1683.
39. Tsukiyama, T., P. B. Becker, and C. Wu. 1994. ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367:525-531.
40. Tsukiyama, T., C. Daniel, J. Tamkun, and C. Wu. 1995. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1028.
41. Tsukiyama, T., and C. Wu. 1995. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83:1011-1020.
42. Ueda, H., S. Sonoda, J. L. Brown, M. P. Scott, and C. Wu. 1990. A sequence-specific DNA-binding protein that activates fushi tarazu segmentation gene expression. Genes Dev. 4:624-635.
43. Varga-Weisz, P. D., M. Wilm, E. Bonte, K. Dumas, M. Mann, and P. B. Becker. 1997. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388:598-602.
44. Wolffe, A. P., and D. Pruss. 1996. Targeting chromatin disruption: transcription regulators that acetylate histones. Cell 84:817-819.
45. Workman, J. L., and R. G. Roeder. 1987. Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II. Cell 51:613-622.
46. Yang, X.-J., V. V. Ogryzko, J.-I. Nishikawa, B. Howard, and Y. Nakatani. 1996. A p300/CBP-associated factor that competes with the adenoviral E1A oncoprotein. Nature 382:319-324.