메뉴 건너뛰기




Volumn 61, Issue 5, 2009, Pages 385-399

Comparative genomic analysis of the major histocompatibility complex class i region in the teleost genus Oryzias

Author keywords

BAC sequence; Comparative genomics; Evolution; Major histocompatibility complex; Oryzias

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; COMPARATIVE STUDY; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; GENE SEQUENCE; GENOMICS; HUMAN; MAJOR HISTOCOMPATIBILITY COMPLEX; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORYZIAS; PRIORITY JOURNAL; TELEOST;

EID: 67349200611     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-009-0371-1     Document Type: Article
Times cited : (17)

References (54)
  • 1
    • 0035667937 scopus 로고    scopus 로고
    • Species-specific evolution of MHC class i genes in the higher primates
    • DOI 10.1034/j.1600-065X.2001.1830104.x
    • EJ Adams P Parham 2001 Species-specific evolution of MHC class I genes in the higher primates Immunol Rev 183 41 64 10.1034/j.1600-065x.2001.1830104.x (Pubitemid 34015437)
    • (2001) Immunological Reviews , vol.183 , pp. 41-64
    • Adams, E.J.1    Parham, P.2
  • 6
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • DOI 10.1006/jmbi.1997.0951
    • C Burge S Karlin 1997 Prediction of complete gene structures in human genomic DNA J Mol Biol 268 78 94 10.1006/jmbi.1997.0951 (Pubitemid 27192680)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 7
    • 0035135822 scopus 로고    scopus 로고
    • Characterization of the MHC class i region of the Japanese pufferfish (Fugu rubripes)
    • DOI 10.1007/s002510000285
    • MS Clark L Shaw A Kelly P Snell G Elgar 2001 Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes) Immunogenetics 52 174 185 10.1007/s002510000285 (Pubitemid 32142804)
    • (2001) Immunogenetics , vol.52 , Issue.3-4 , pp. 174-185
    • Clark, M.S.1    Shaw, L.2    Kelly, A.3    Snell, P.4    Elgar, G.5
  • 8
    • 4444362211 scopus 로고    scopus 로고
    • Genetic divergence of the rhesus macaque major histocompatibility complex
    • DOI 10.1101/gr.2134504
    • R Daza-Vamenta G Glusman L Rowen B Guthrie DE Geraghty 2004 Genetic divergence of the rhesus macaque major histocompatibility complex Genome Res 14 1501 1515 10.1101/gr.2134504 (Pubitemid 39193401)
    • (2004) Genome Research , vol.14 , Issue.8 , pp. 1501-1515
    • Daza-Vamenta, R.1    Glusman, G.2    Rowen, L.3    Guthrie, B.4    Geraghty, D.E.5
  • 9
    • 38049120766 scopus 로고    scopus 로고
    • Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes
    • 10.1186/gb-2007-8-8-r175
    • JC Dohm E Tsend-Ayush R Reinhardt F Grutzner H Himmelbauer 2007 Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes Genome Biol 8 R175 10.1186/gb-2007-8-8-r175
    • (2007) Genome Biol , vol.8 , pp. 175
    • Dohm, J.C.1    Tsend-Ayush, E.2    Reinhardt, R.3    Grutzner, F.4    Himmelbauer, H.5
  • 10
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • B Ewing P Green 1998 Base-calling of automated sequencer traces using phred II. Error probabilities Genome Res 8 186 194 (Pubitemid 28177230)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 11
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • B Ewing L Hillier MC Wendl P Green 1998 Base-calling of automated sequencer traces using phred I. Accuracy assessment Genome Res 8 175 185 (Pubitemid 28177229)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 14
    • 46649113515 scopus 로고    scopus 로고
    • Species-specific evolution of class i MHC genes in iguanas (order: Squamata; Subfamily: Iguaninae)
    • 10.1007/s00251-008-0298-y
    • S Glaberman A Caccone 2008 Species-specific evolution of class I MHC genes in iguanas (order: Squamata; subfamily: Iguaninae) Immunogenetics 60 371 382 10.1007/s00251-008-0298-y
    • (2008) Immunogenetics , vol.60 , pp. 371-382
    • Glaberman, S.1    Caccone, A.2
  • 15
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • D Gordon C Abajian P Green 1998 Consed: a graphical tool for sequence finishing Genome Res 8 195 202 (Pubitemid 28177231)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 16
    • 0034768973 scopus 로고    scopus 로고
    • The major histocompatibility complex of the rat (Rattus norvegicus)
    • DOI 10.1007/s002510100361
    • E Gunther L Walter 2001 The major histocompatibility complex of the rat (Rattus norvegicus) Immunogenetics 53 520 542 10.1007/s002510100361 (Pubitemid 33044432)
    • (2001) Immunogenetics , vol.53 , Issue.7 , pp. 520-542
    • Gunther, E.1    Walter, L.2
  • 17
  • 20
    • 0031959205 scopus 로고    scopus 로고
    • Analysis of polymorphisms in the major expressed class i locus (B-FIV) of the chicken
    • DOI 10.1007/s002510050383
    • HD Hunt JE Fulton 1998 Analysis of polymorphisms in the major expressed class I locus (B-FIV) of the chicken Immunogenetics 47 456 467 10.1007/s002510050383 (Pubitemid 28197643)
    • (1998) Immunogenetics , vol.47 , Issue.6 , pp. 456-467
    • Hunt, H.D.1    Fulton, J.E.2
  • 23
    • 0033613425 scopus 로고    scopus 로고
    • The chicken B locus is a minimal essential major histocompatibility complex
    • DOI 10.1038/44856
    • J Kaufman S Milne TW Gobel BA Walker JP Jacob C Auffray R Zoorob S Beck 1999 The chicken B locus is a minimal essential major histocompatibility complex Nature 401 923 925 10.1038/44856 (Pubitemid 29518962)
    • (1999) Nature , vol.401 , Issue.6756 , pp. 923-925
    • Kaufman, J.1    Milne, S.2    Gobel, T.W.F.3    Walker, B.A.4    Jacob, J.P.5    Auffray, C.6    Zoorob, R.7    Beck, S.8
  • 24
    • 0028702002 scopus 로고
    • Evolutionary conservation of MHC class i and class II molecules - Different yet the same
    • J Kaufman J Salomonsen M Flajnik 1994 Evolutionary conservation of MHC class I and class II molecules-different yet the same Semin Immunol 6 411 424 10.1006/smim.1994.1050 (Pubitemid 124001537)
    • (1994) Seminars in Immunology , vol.6 , Issue.6 , pp. 411-424
    • Kaufman, J.1    Salomonsen, J.2    Flajnik, M.3
  • 25
    • 12944320844 scopus 로고    scopus 로고
    • Comparative genomics of major histocompatibility complexes
    • DOI 10.1007/s00251-004-0717-7
    • J Kelley L Walter J Trowsdale 2005 Comparative genomics of major histocompatibility complexes Immunogenetics 56 683 695 10.1007/s00251-004-0717-7 (Pubitemid 40174963)
    • (2005) Immunogenetics , vol.56 , Issue.10 , pp. 683-695
    • Kelley, J.1    Walter, L.2    Trowsdale, J.3
  • 26
    • 34548396076 scopus 로고    scopus 로고
    • MHC, TSP, and the origin of species: From immunogenetics to evolutionary genetics
    • 10.1146/annurev.genet.41.110306.130137
    • J Klein A Sato N Nikolaidis 2007 MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics Annu Rev Genet 41 281 304 10.1146/annurev.genet.41.110306.130137
    • (2007) Annu Rev Genet , vol.41 , pp. 281-304
    • Klein, J.1    Sato, A.2    Nikolaidis, N.3
  • 28
    • 0036200965 scopus 로고    scopus 로고
    • Nucleotide sequence of the MHC class i genomic region of a teleost, the medaka (Oryzias latipes)
    • 10.1007/s00251-001-0427-3
    • MY Matsuo S Asakawa N Shimizu H Kimura M Nonaka 2002 Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes) Immunogenetics 53 930 940 10.1007/s00251-001-0427-3
    • (2002) Immunogenetics , vol.53 , pp. 930-940
    • Matsuo, M.Y.1    Asakawa, S.2    Shimizu, N.3    Kimura, H.4    Nonaka, M.5
  • 29
    • 0034657758 scopus 로고    scopus 로고
    • A contig map of the Mhc class i genomic region in the zebrafish reveals ancient synteny
    • V Michalova BW Murray H Sultmann J Klein 2000 A contig map of the Mhc class I genomic region in the zebrafish reveals ancient synteny J Immunol 164 5296 5305
    • (2000) J Immunol , vol.164 , pp. 5296-5305
    • Michalova, V.1    Murray, B.W.2    Sultmann, H.3    Klein, J.4
  • 31
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • 10.1146/annurev.genet.39.073003.112240
    • M Nei AP Rooney 2005 Concerted and birth-and-death evolution of multigene families Annu Rev Genet 39 121 152 10.1146/annurev.genet.39.073003.112240
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 32
    • 0034058721 scopus 로고    scopus 로고
    • Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus
    • 10.1007/s002510050030
    • M Nonaka C Yamada-Namikawa MF Flajnik L Du Pasquier 2000 Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus, Xenopus Immunogenetics 51 186 192 10.1007/s002510050030
    • (2000) Immunogenetics , vol.51 , pp. 186-192
    • Nonaka, M.1    Yamada-Namikawa, C.2    Flajnik, M.F.3    Du Pasquier, L.4
  • 33
    • 33644840190 scopus 로고    scopus 로고
    • Ancestral organization of the MHC revealed in the amphibian Xenopus
    • Y Ohta W Goetz MZ Hossain M Nonaka MF Flajnik 2006 Ancestral organization of the MHC revealed in the amphibian Xenopus J Immunol 176 3674 3685
    • (2006) J Immunol , vol.176 , pp. 3674-3685
    • Ohta, Y.1    Goetz, W.2    Hossain, M.Z.3    Nonaka, M.4    Flajnik, M.F.5
  • 34
    • 0037080019 scopus 로고    scopus 로고
    • Proteasome, transporter associated with antigen processing, and class i genes in the nurse shark Ginglymostoma cirratum: Evidence for a stable class i region and MHC haplotype lineages
    • Y Ohta EC McKinney MF Criscitiello MF Flajnik 2002 Proteasome, transporter associated with antigen processing, and class I genes in the nurse shark Ginglymostoma cirratum: evidence for a stable class I region and MHC haplotype lineages J Immunol 168 771 781
    • (2002) J Immunol , vol.168 , pp. 771-781
    • Ohta, Y.1    Criscitiello, M.F.2    Flajnik, M.F.3
  • 35
    • 0034712862 scopus 로고    scopus 로고
    • Primitive synteny of vertebrate major histocompatibility complex class i and class II genes
    • 10.1073/pnas.97.9.4712
    • Y Ohta K Okamura EC McKinney S Bartl K Hashimoto MF Flajnik 2000 Primitive synteny of vertebrate major histocompatibility complex class I and class II genes Proc Natl Acad Sci U S A 97 4712 4717 10.1073/pnas.97.9.4712
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 4712-4717
    • Ohta, Y.1    Okamura, K.2    Bartl, S.3    Hashimoto, K.4    Flajnik, M.F.5
  • 36
    • 0242391995 scopus 로고    scopus 로고
    • Two highly divergent ancient allelic lineages of the transporter associated with antigen processing (TAP) gene in Xenopus: Further evidence for co-evolution among MHC class i region genes
    • 10.1002/eji.200324207
    • Y Ohta SJ Powis RL Lohr M Nonaka LD Pasquier MF Flajnik 2003 Two highly divergent ancient allelic lineages of the transporter associated with antigen processing (TAP) gene in Xenopus: further evidence for co-evolution among MHC class I region genes Eur J Immunol 33 3017 3027 10.1002/eji.200324207
    • (2003) Eur J Immunol , vol.33 , pp. 3017-3027
    • Ohta, Y.1    Powis, S.J.2    Lohr, R.L.3    Nonaka, M.4    Pasquier, L.D.5    Flajnik, M.F.6
  • 37
    • 0031424262 scopus 로고    scopus 로고
    • The most primitive vertebrates with jaws possess highly polymorphic MHC class i genes comparable to those of humans
    • 10.1016/S1074-7613(00) 80396-9
    • K Okamura M Ototake T Nakanishi Y Kurosawa K Hashimoto 1997 The most primitive vertebrates with jaws possess highly polymorphic MHC class I genes comparable to those of humans Immunity 7 777 790 10.1016/S1074-7613(00) 80396-9
    • (1997) Immunity , vol.7 , pp. 777-790
    • Okamura, K.1    Ototake, M.2    Nakanishi, T.3    Kurosawa, Y.4    Hashimoto, K.5
  • 38
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • 10.1101/gr.10.4.516
    • AA Salamov VV Solovyev 2000 Ab initio gene finding in Drosophila genomic DNA Genome Res 10 516 522 10.1101/gr.10.4.516
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 40
    • 27844495743 scopus 로고    scopus 로고
    • A genome-wide survey of major histocompatibility complex (MHC) genes and their paralogues in zebrafish
    • 10.1186/1471-2164-6-152
    • JG Sambrook F Figueroa S Beck 2005 A genome-wide survey of major histocompatibility complex (MHC) genes and their paralogues in zebrafish BMC Genomics 6 152 10.1186/1471-2164-6-152
    • (2005) BMC Genomics , vol.6 , pp. 152
    • Sambrook, J.G.1    Figueroa, F.2    Beck, S.3
  • 45
    • 20444395855 scopus 로고    scopus 로고
    • Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences
    • 10.1016/j.ympev.2005.01.016
    • Y Takehana K Naruse M Sakaizumi 2005 Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences Mol Phylogenet Evol 36 417 428 10.1016/j.ympev.2005. 01.016
    • (2005) Mol Phylogenet Evol , vol.36 , pp. 417-428
    • Takehana, Y.1    Naruse, K.2    Sakaizumi, M.3
  • 46
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 47
    • 0344721480 scopus 로고    scopus 로고
    • Complete sequence and gene map of a human major histocompatibility complex
    • The MHC sequencing consortium. 10.1038/44853
    • The MHC sequencing consortium 1999 Complete sequence and gene map of a human major histocompatibility complex Nature 401 921 923 10.1038/44853
    • (1999) Nature , vol.401 , pp. 921-923
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 10.1093/nar/25.24.4876
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 50
    • 62349099015 scopus 로고    scopus 로고
    • Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class i region of a teleost medaka, Oryzias latipes
    • 10.1093/molbev/msn305
    • K Tsukamoto M Sakaizumi M Hata Y Sawara J Eah CB Kim M Nonaka 2009 Dichotomous haplotypic lineages of the immunoproteasome subunit genes, PSMB8 and PSMB10, in the MHC class I region of a teleost medaka, Oryzias latipes Mol Biol Evol 24 769 781 10.1093/molbev/msn305
    • (2009) Mol Biol Evol , vol.24 , pp. 769-781
    • Tsukamoto, K.1    Sakaizumi, M.2    Hata, M.3    Sawara, Y.4    Eah, J.5    Kim, C.B.6    Nonaka, M.7
  • 51
    • 0037303106 scopus 로고    scopus 로고
    • Construction of a BAC library for Haplochromis chilotes, a cichlid fish from Lake Victoria
    • 10.1266/ggs.78.103
    • M Watanabe N Kobayashi A Fujiyama N Okada 2003 Construction of a BAC library for Haplochromis chilotes, a cichlid fish from Lake Victoria Genes Genet Syst 78 103 105 10.1266/ggs.78.103
    • (2003) Genes Genet Syst , vol.78 , pp. 103-105
    • Watanabe, M.1    Kobayashi, N.2    Fujiyama, A.3    Okada, N.4
  • 52
    • 0036245348 scopus 로고    scopus 로고
    • Medaka-a model organism from the Far East
    • 10.1038/nrg704
    • J Wittbrodt A Shima M Schartl 2002 Medaka-a model organism from the Far East Nat Rev Genet 3 53 64 10.1038/nrg704
    • (2002) Nat Rev Genet , vol.3 , pp. 53-64
    • Wittbrodt, J.1    Shima, A.2    Schartl, M.3
  • 53
    • 33645772189 scopus 로고    scopus 로고
    • The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes
    • 10.1266/ggs.81.29
    • Y Yamanoue M Miya JG Inoue K Matsuura M Nishida 2006 The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes Genes Genet Syst 81 29 39 10.1266/ggs.81.29
    • (2006) Genes Genet Syst , vol.81 , pp. 29-39
    • Yamanoue, Y.1    Miya, M.2    Inoue, J.G.3    Matsuura, K.4    Nishida, M.5
  • 54
    • 0032483463 scopus 로고    scopus 로고
    • Structural principles that govern the peptide-binding motifs of class i MHC molecules
    • 10.1006/jmbi.1998.1982
    • C Zhang A Anderson C DeLisi 1998 Structural principles that govern the peptide-binding motifs of class I MHC molecules J Mol Biol 281 929 947 10.1006/jmbi.1998.1982
    • (1998) J Mol Biol , vol.281 , pp. 929-947
    • Zhang, C.1    Anderson, A.2    Delisi, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.