Species-specific evolution of MHC class I genes in the higher primates

Immunological Reviews

Volumn 183, Issue , 2001, Pages 41-64

  Adams, Erin J ^a   Parham, Peter ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA E ANTIGEN; HLA F ANTIGEN; HLA G ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1;

ALLELE; APE; GENE DUPLICATION; GENE EXPRESSION; GENE LOCUS; HLA SYSTEM; HUMAN; IMMUNE RESPONSE; IMMUNOGENETICS; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR EVOLUTION; MONKEY; NONHUMAN; PRIMATE; PRIORITY JOURNAL; REVIEW; SPECIES;

ANIMALS; CEBIDAE; CERCOPITHECIDAE; EVOLUTION, MOLECULAR; GENES, MHC CLASS I; HUMANS; PEDIGREE; PHYLOGENY; POLYMORPHISM, GENETIC; PRIMATES; SPECIES SPECIFICITY; TERMINOLOGY;

EID: 0035667937     PISSN: 01052896     EISSN: None     Source Type: Journal    
DOI: 10.1034/j.1600-065X.2001.1830104.x     Document Type: Review

References (99)

1. The complete genomic sequence of 424,015 bp at the centromeric end of the HLA class I region: Gene content and polymorphism
2. A 356-Kb sequence of the subtelomeric part of the MHC Class I region
3. The human major histocompatibility complex: 42,221 bp of genomic sequence, high-density sequence-tagged site map, evolution, and polymorphism for HLA class I
4. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region
5. Nomenclature for the major histocompatibility complexes of different species: A proposal
6. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
7. HLA and HIV-1: Heterozygote advantage and B*35-Cw*04 disadvantage
8. A genetic herd-immunity model for the maintenance of MHC polymorphism
9. The rise and fall of great class I genes
10. Nomenclature for factors of the HLA system, update April 2001
11. Killer cell receptors: Keeping pace with MHC class I evolution
12. HLA-C is the inhibitory ligand that determines dominant resistance to lysis by NK1- and NK2-specific natural killer cells
13. Generation of allospecific natural killer cells by stimulation across a polymorphism of HLA-C
14. P58 molecules as putative receptors for major histocompatibility complex (MHC) class I molecules in human natural killer (NK) cells. Anti-p58 antibodies reconstitute lysis of MHC class I-protected cells in NK clones displaying different specificities
15. The Bw4 public epitope of HLA-B molecules confers reactivity with natural killer cell clones that express NKB1, a putative HLA receptor
16. NKB1: A natural killer cell receptor involved in the recognition of polymorphic HLA-B molecules
17. A human killer inhibitory receptor specific for HLA-A1,2
18. The natural killer cell receptor specific for HLA-A allotypes: A novel member of the p58/p70 family of inhibitory receptors that is characterized by three immunoglobulin-like domains and is expressed as a 140-kD disulphide-linked dimer
19. Functionally and structurally distinct NK cell receptor repertoires in the peripheral blood of two human donors
20. HLA-E binds to natural killer cell receptors CD94/NKG2A, B and C
21. A human histocompatibility leukocyte antigen (HLA)-G-specific receptor expressed on all natural killer cells
22. The functionality of HLA-G is emerging
23. Functional characterization of HLA-F and binding of HLA-F tetramers to ILT2 and ILT4 receptors
24. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments
25. HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A. Implications for the evolution of the HLA-A-related genes
26. HLA-AR, an inactivated antigen-presenting locus related to HLA-A. Implications for the evolution of the MHC
27. A continuous restriction map from HLA-E to HLA-F. Structural comparison between different HLA-A haplotypes
28. Mapping and characterization of non-HLA multigene assemblages in the human MHC class I region
29. Large-scale comparative mapping of the MHC class I region of predominant haplotypes in Japanese
30. Genomics of the major histocompatibility complex: Haplotypes, duplication, retroviruses and disease
31. Comparison of class I MHC alleles in humans and apes
32. Common chimpanzees have greater diversity than humans at two of the three highly polymorphic MHC class I genes
33. HLA-A and B polymorphisms predate the divergence of humans and chimpanzees
34. Nucleotide sequences of chimpanzee MHC class I alleles: Evidence for trans-species mode of evolution
35. Chimpanzee MHC class I A locus alleles are related to only one of the six families of human A locus alleles
36. Gorilla class I major histocompatibility complex alleles: Comparison to human and chimpanzee class I
37. A major histocompatibility complex class I allele shared by two species of chimpanzee
38. Genomic analysis of common chimpanzee major histocompatibility complex class I genes
39. Structure and content of the major histocompatibility complex (MHC) class I regions of the great anthropoid apes
40. HLA-H: A pseudogene with increased variation due to balancing selection at neighboring loci
41. Isolation of the HLA-H orthologue in gorillas and chimpanzees
42. Exon/intron organization and complete nucleotide sequence of an HLA gene
43. Characterisation of a novel HLA-A pseudogene, HLA-BEL, with significant sequence identity with a gorilla MHC class I gene
44. Segmental exchange between MHC class I genes in a higher primate: Recombination in the gorilla between the ancestor of a human non-functional gene and an A locus gene
45. A novel, non-classical MHC class I molecule specific to the common chimpanzee
46. The descent of hominoids and hominids
47. DNA hybridization evidence of hominoid phylogeny: A reanalysis of the data
48. Estimation of primate speciation dates using local molecular clocks
49. Primate origins: Plugging the gaps
50. Molecular cloning of orangutan and gibbon MHC class I cDNA. The HLA-A and -B loci diverged over 30 million years ago
51. The MHC class I genes of the rhesus monkey. Different evolutionary histories of MHC class I and II genes in primates
52. Characterization of baboon class I major histocompatibility molecules. Implications for baboon-to-human xenotransplantation
53. Class I MHC expression in the yellow baboon
54. Animal models for the study of human immunodeficiency virus infections
55. Induction of AIDS-like disease in macaque monkeys with T-cell tropic retrovirus STLV-III
56. Definition of an epitope and MHC class I molecule recognized by gag-specific cytotoxic T lymphocytes in SIVmac-infected rhesus monkeys
57. A simian immunodeficiency virus envelope V3 cytotoxic T-lymphocyte epitope in rhesus monkeys and its restricting major histocompatibility complex class I molecule Mamu-A*02
58. Definition of human immunodeficiency virus type 1 gp120 and gp41 cytotoxic T-lymphocyte epitopes and their restricting major histocompatibility complex class I alleles in simian-human immunodeficiency virus-infected rhesus monkeys
59. Identification of a novel MHC class I gene, Mamu-AG, expressed in the placenta of a primate with an inactivated G locus
60. A uniquely high level of recombination at the HLA-B locus
61. The origins of HLA-A,B,C polymorphism
62. The HLA-B73 antigen has a most unusual structure that defines a second lineage of HLA-B alleles
63. Evidence for an HLA-C-like locus in the orangutan Pongo pygmaeus
64. Definition of five new simian immunodeficiency virus cytotoxic T-lymphocyte epitopes and their restricting major histocompatibility complex class I molecules: Evidence for an influence on disease progression
65. A MHC class I B locus allele-restricted simian immunodeficiency virus envelope CTL epitope in rhesus monkeys
66. Mamu-I: A novel primate MHC class I B-related locus with unusually low variability
67. Rapid evolution of NK cell receptor systems demonstrated by comparison of chimpanzees and humans
68. Diversity of the killer cell Ig-like receptors of rhesus monkeys
69. Evolution of natural killer cell receptors. Coexistence of functional Ly49 and KIR genes in baboons
70. Molecular clones of the p58 NK cell receptor reveal immunoglobulin-related molecules with diversity in both the extra- and intracellular domains
71. The MHC E locus in macaques is polymorphic and is conserved between macaques and humans
72. The MHC-E locus is the most well conserved of all known primate class I histocompatibility genes
73. Mhc-E polymorphism in Pongidae primates: The same allele is found in two different species
74. Structural features impose tight peptide binding specificity in the nonclassical MHC molecule HLA-E
75. The human major histocompatibility complex class Ib molecule HLA-E binds signal sequence-derived peptides with primary anchor residues at positions 2 and 9
76. Conservation and variation in human and common chimpanzee CD94 and NKG2 genes
77. HLA-F is a predominantly empty, intracellular, TAP-associated MHC class Ib protein with a restricted expression pattern
78. Characterization of the rhesus macaque (Macaca mulatta) equivalent of HLA-F
79. Evolution of the MHC class I genes of a New World primate from ancestral homologues of human nonclassical genes
80. HLA-G and pregnancy
81. Alternative splicing of HLA-G transcripts yields proteins with primary structures resembling both class I and class II antigens
82. The mRNA of a human class I gene HLA G/HLA 6.0 exhibits a restricted pattern of expression
83. Lack of MHC-G4 and soluble (G5, G6) isoforms in the higher primates, Pongidae
84. Identification of the rhesus monkey HLA-G ortholog. Mamu-G is a pseudogene
85. Allelic diversity at the primate Mhc-G locus: Exon 3 bears stop codons in all Cercopithecinae sequences
86. Evolution of a new nonclassical MHC class I locus in two Old World primate species
87. A primate species with limited major histocompatibility complex class I polymorphism
88. Unusually limited nucleotide sequence variation of the expressed major histocompatibility complex class I genes of a New World primate species (Saguinus oedipus)
89. MHC class I-processed pseudogenes in New World primates provide evidence for rapid turnover of MHC class I genes
90. MHC class I genes in a New World primate, the cotton-top tamarin (Saguinus oedipus), have evolved by an active process of loci turnover
91. Evolutionary instability of the major histocompatibility complex class I loci in New World primates
92. Evolution by the birth-and-death process in multigene families of the vertebrate immune system
93. Episodic evolution and turnover of HLA-B in the indigenous human populations of the Americas
94. New recombinant HLA-B alleles in a tribe of South American Amerindians indicate rapid evolution of MHC class I loci
95. The neighbor-joining method: A new method for reconstructing phylogenetic trees
96. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
97. Confidence limits on phylogenies: An approach using the bootstrap
98. Gorillas with spondyloarthropathies express an MHC class I molecule with only limited sequence similarity to HLA-B27 that binds peptides with arginine at P2
99. Molecular phylogeny of the New World monkeys (Platyrrhini, primates)