Expression, linkage, and polymorphism of MHC-related genes in rainbow trout, Oncorhynchus mykiss

Journal of Immunology

Volumn 163, Issue 2, 1999, Pages 774-786

  Hansen, John D ^a   Strassburger, Pamela ^a   Thorgaard, Gary H ^b   Young, William P ^b,c   Du Pasquier, Louis ^a  

^a BASEL INSTITUTE FOR IMMUNOLOGY   (Switzerland)

^b WASHINGTON STATE UNIVERSITY   (United States)

^c NORTHERN ARIZONA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ARTICLE; DNA POLYMORPHISM; GENE EXPRESSION; GENE STRUCTURE; GENETIC LINKAGE; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAINBOW TROUT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0033565720     PISSN: 00221767     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (80)

1. Rammensee, H. G., K. Falk, and O. Rotzschke. 1993. Peptides naturally presented by MHC class I molecules. Annu. Rev. Immunol. 11:213.
2. Pieters, J. 1997. MHC class II restricted antigen presentation. Curr. Opin. Immunol. 9:89.
3. Klein, J., and C. O'Huigin. 1994. The conundrum of non-classical major histocompatibility complex genes. Proc. Natl. Acad. Sci. USA 91:6251.
4. Parham, P. 1994. The rise and fall of great class I genes. Semin. Immunol. 6:373.
5. Vance, R. E., J. R. Kraft, J. D. Altman, P. E. Jensen, and D. H. Raulet. 1998. Mouse CD94/NKG2A is a natural killer cell receptor for the nonclassical major histocompatibility complex (MHC) class I molecule Qa-1(b). J. Exp. Med 188: 1841.
6. Braud, V. M., D. S. Allan, C. A. O'Callaghan, K. Soderstrom, A. D'Andrea, G. S. Ogg, S. Lazetic, N. T. Young, J. I. Bell, J. H. Phillips, L. L. Lanier, and A. J. McMichael. 1998. HLA-E binds to natural killer cell receptors CD94/ NKG2A, B and C. Nature 391:795.
7. Coux, O., K. Tanaka, and A. L. Goldberg. 1996. Structure and functions of the 20S and 26S proteasomes. Annu. Rev. Biochem. 65:801.
8. Monaco, J. J., and D. Nandi. 1995. The genetics of proteasomes and antigen processing. Ann. Rev. Genet. 29:729.
9. Hisamatsu, H., N. Shimbara, Y. Saito, P. Kristensen, K. B. Hendil, T. Fujiwara, E. Takahashi, N. Tanahashi, T. Tamura, A. Ichihara, and K. Tanaka. 1996. Newly identified pair of proteasomal subunits regulated reciprocally by interferon γ. J. Exp. Med. 183:1807.
10. Kandil, E., K. Kohda, T. Ishibashi, K. Tanaka, and M. Kasahara. 1997. PA28 subunits of the mouse proteasome: primary structures and chromosomal localization of the genes. Immunogenetics 46:337.
11. Nandi, D , H. Jiang, and J. J. Monaco. 1996. Identification of MECL-1 (LMP-10) as the third IFN-γ-inducible proteasome subunit. J. Immunol. 156:2361.
12. Groettrup, M., R. Kraft, S. Kostka, S. Standera, R. Stohwasser, and P. M. Kloetzel. 1996. A third interferon-γ-induced subunit exchange in the 20S proteasome. Eur. J. Immunol. 26:863.
13. Boes, B., H. Hengel, T. Ruppert, G. Multhaup, U. H. Koszinowski, and P. M. Kloetzel. 1994. Interferon γ stimulation modulates the proteolytic activity and cleavage site preference of 20S mouse proteasomes. J. Exp. Med. 179:901.
14. Kuckelkorn, U., S. Frentzel, R. Kraft, S. Kostka, M. Groettrup, and P. M. Kloetzel. 1995. Incorporation of major histocompatibility complex-encoded subunits LMP2 and LMP7 changes the quality of the 20S proteasome polypeptide processing products independent of interferon-gamma. Eur. J. Immunol. 25:2605.
15. Deverson, E. V., I. R. Gow, W. J. Coadwell, J. J. Monaco, G. W. Butcher, and J. C. Howard. 1990. MHC class II region encoding proteins related to the multidrug resistance family of transmembrane transporters. Nature 348:738.
16. Bahram, S., D. Arnold, M. Bresnahan, J. L. Strominger, and T. Spies. 1991. Two putative subunits of a peptide pump encoded in the human major histocompatibility complex class II region. Proc. Natl. Acad. Sci. USA 88:10094.
17. Beck, S., A. Kelly, E. Radley, F. Khurshid, R. P. Alderton, and J. Trowsdale 1992. DNA sequence analysis of 66 kb of the human MHC class II region encoding a cluster of genes for antigen processing. J. Mol. Biol 228:433.
18. Sadasivan, B., P. J. Lehner, B. Ortmann, T. Spies, and P. Cresswell. 1996. Roles for calreticulin and a novel glycoprotein, tapasin, in the interaction of MHC class I molecules with TAP. Immunity 5:103.
19. Joly, A. L., A. L. Le Rolle, A. L. Gonzalez, W. J. Mehling, W. J. Stevens, W. J. Coadwell, J. C. Hunig, J. C. Howard, and G. W. Butcher. 1998. Co-evolution of rat TAP transporters and MHC class IRT1-A molecules. Curr. Biol. 8:169.
20. Monaco, J. J. 1992. A molecular model of MHC class-I-restricted antigen processing. Immunol. Today 13:173.
21. Klein, J. 1986. Natural History of the Major Histocomnatibility Complex. Wiley-Interscience, New York, NY.
22. Kaufman, J., H. Volk, and H. J. Wallny. 1995. A "minimal essential Mhc" and an "unrecognized Mhc": two extremes in selection for polymorphism. Immunol. Rev. 143:63.
23. Nonaka, M., C. Namikawa-Yamada, M. Sasaki, L. Salter-Cid, and M. F. Flajnik. 1997. Evolution of proteasome subunits delta and LMP2: complementary DNA cloning and linkage analysis with MHC in lower vertebrates. J. Immunol. 159: 734.
24. Bingulac-Popovic, J., F. Figueroa, A. Sato, W. S. Talbot, S. L. Johnson, M. Gates, J. H. Postlethwait, and J. Klein. 1997. Mapping of mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio. Immunogenetics 46:129.
25. Carroll, R. L. 1988. Vertebrate Paleontology and Evolution. Freeman, New York.
26. Vallejo, A. N., N. W. Miller, and W. L. Clem. 1992. Antigen processing and presentation in teleost immune response. Ann. Rev. Fish Dis. 73:605.
27. Du Pasquier, L., and M. Flajnik. 1998. Origin and evolution of the immune system. In Fundamental Immunology. W. E. Paul, ed. Lippincott-Raven, Philadelphia, p. 605.
28. Partula, S., A. de Guerra, J. S. Fellah, and J. Charlemagne. 1995. Structure and diversity of the T cell antigen receptor β-chain in a teleost fish. J. Immunol. 155:699.
29. Partula, S., A. de Guerra, J. S. Fellah, and J. Charlemagne. 1996. Structure and diversity of the TCR α-chain in a teleost fish. J. Immunol. 157:207.
30. Hansen, J. D., P. Strassburger, and L. Du Pasquier. 1996. Conservation of an α 2 domain within the teleostean world, MHC class I from the rainbow trout Oncorhynchus mykiss. Dev. Camp. Immunol. 20:417.
31. 2-microglobulin sequence diversity in individual rainbow trout. Proc. Natl. Acad. Sci. USA 93:2779.
32. Glamann, J. 1995. Complete coding sequence of rainbow trout Mhc II β chain. Scand. J. Immunol. 41:365.
33. Young, W. P., P. A. Wheeler, R. D. Fields, and G. H. Thorgaard. 1996. DNA fingerprinting confirms isogenicity of androgenetically derived rainbow trout lines. J. Hered. 87:77.
34. Young, W. P., P. A. Wheeler, V. H. Coryell, P. Keim, and G. H. Thorgaard. 1998. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148:839.
35. Hansen, J. D., P. Strassburger, and L. Du Pasquier. 1997. Conservation of a master hematopoietic switch gene during vertebrate evolution: isolation and characterization of Ikaros from teleost and amphibian species. Eur. J. Immunol. 27: 3049.
36. Hansen, J. D. 1997. Characterization of rainbow trout terminal deoxynucleotidyl transferase structure and expression: TdT and RAG1 co-expression define the trout primary lymphoid tissues. Immunogenetics 46:367.
37. Page, R. D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357.
38. Felsentstein, J. 1993. PHYLIP (Phytogeny Inference Package)[computer program]. Version 3.5c. Seattle, Washington, Department of Genetics, University of Washington.
39. Grimholt, U. 1997. Transport-associated proteins in Atlantic salmon (Salmo salar). Immunogenetics 46:213.
40. Elliott, T. 1997. Transporter associated with antigen processing. Adv. Immunol 65:47.
41. Spies, T., and R. DeMars. 1991. Restored expression of major histocompatibility class I molecules by gene transfer of a putative peptide transporter. Nature 351: 323.
42. Powis, S. J., A. R. Townsend, E. V. Deverson, J. Bastin, G. W. Butcher, and J. C. Howard. 1991. Restoration of antigen presentation to the mutant cell line RMA-S by an MHC-linked transporter. Nature 354:528.
43. Stevens, J., K. H. Wiesmuller, P. Walden, and E. Joly. 1998. Peptide length preferences for rat and mouse MHC class I molecules using random peptide libraries. Eur. J. Immunol 28:1272.
44. Nandi, D., K. Marusina, and J. J. Monaco. 1998. How do endogenous proteins become peptides and reach the endoplasmic reticulum? Curr. Top. Microbiol. Immunol. 232:15.
45. Joly, E., and G. W Butcher. 1998. Why are there two rat TAPs? Immunol. Today 19:580.
46. Momburg, F., E. A. Armandola, M. Post, and G. J. Hammerling. 1996. Residues in TAP2 peptide transporters controlling substrate specificity. J. Immunol. 156: 1756.
47. Deverson, E. V., L. Leong, A. Seelig, W. J. Coadwell, E. M. Tredgett, G. W. Butcher, and J. C. Howard. 1998. Functional analysis by site-directed mutagenesis of the complex polymorphism in rat transporter associated with antigen processing. J. Immunol. 160:2767.
48. Armandola, E. A., F. Momburg, M. Nijenhuis, N. Bulbuc, K. Fruh, and G. J. Hammerling. 1996. A point mutation in the human transporter associated with antigen processing (TAP2) alters the peptide transport specificity. Eur. J. Immunol. 26:1748.
49. Joly, E., E. V. Deverson, J. W. Coadwell, E. Gunther, J. C. Howard, and G. W. Butcher. 1994. The distribution of Tap2 alleles among laboratory rat RT1 haplotypes. Immunogenetics 40:45.
50. Tomazin, R., A. B. Hill, P. Jugovic, I. York, P. van Endert, H. L. Ploegh, D. W. Andrews, and D. C. Johnson. 1996. Stable binding of the herpes simplex virus ICP47 protein to the peptide binding site of TAP. Embo J. 15:3256.
51. Hengel, H., J. O. Koopmann, T. Flohr, W. Muranyi, E. Goulmy, G. J. Hammerling, U. H. Koszinowski, and F. Momburg. 1997. A viral ER-resident glycoprotein inactivates the MHC-encoded peptide transporter. Immunity 6:623.
52. Jugovic, P., A. M. Hill, R. Tomazin, H. Ploegh, and D. C. Johnson. 1998. Inhibition of major histocompatibility complex class I antigen presentation in pig and primate cells by herpes simplex virus type 1 and 2 ICP47. J Virol. 72:5076.
53. Klein, J., R. E. Bontrop, R. L. Dawkins, H. A. Erlich, U. B. Gyllensten, E. R. Heise, P. P. Jones, P. Parham, E. K. Wakeland, and D. I. Watkins. 1990. Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics 31:217.
54. Ohno, S. 1970. The enormous diversity in genome sizes of fish as a reflection of nature's extensive experiments with gene duplication. Trans. Am. Fish. Soc. 99: 120.
55. 2-microglobulin sequences reveal invariant surface residues. J. Immunol. 148:1532.
56. Harris, M. R., Y. Y. Yu, C. S. Kindle, T. H. Hansen, and J. C. Solheim. 1998. Calreticulin and calnexin interact with different protein and glycan determinants during the assembly of MHC class I. J. Immunol. 160:5404.
57. Guild, B. C., and J. L. Strominger. 1984 Human and murine class I MHC antigens share conserved serine 335, the site of HLA phosphorylation in vivo. J. Biol. Chem. 259:9235.
58. Bartl, S. 1998. What sharks can tell us about the evolution of MHC genes. Immunol. Rev. 166:317.
59. Miller, K. M., and R. E. Withler. 1998. The salmonid class I MHC: limited diversity in a primitive teleost. Immunol. Rev. 166:279.
60. Hunt, H. D., G. T. Pharr, and L. D. Bacon. 1994. Molecular analysis reveals MHC class I intra-locus recombination in the chicken. Immunogenetics 40:370.
61. Kasahara, M., E. C. McKinney, M. F. Flajnik, and T. Ishibashi. 1993. The evolutionary origin of the major histocompatibility complex: polymorphism of class II α chain genes in the cartilaginous fish. Eur. J. Immunol. 23:2160.
62. Bartl, S., and I. L. Weissman. 1994. Isolation and characterization of major histocompatibility complex class IIB genes from the nurse shark. Proc. Natl. Acad. Sci. USA 91:262.
63. Okamura, K., M. Ototake, T. Nakanishi, Y. Kurosawa, and K. Hashimoto. 1997. The most primitive vertebrates with jaws possess highly polymorphic MHC class I genes comparable to those of humans. Immunity 7:777.
64. Bartl, S., M. A. Baish, M. F. Flajnik, and Y. Ohta. 1997. Identification of class I genes in cartilaginous fish, the most ancient group of vertebrates displaying an adaptive immune response. J. Immunol. 159:6097.
65. Parham, P., and T. Ohta. 1996. Population biology of antigen presentation by MHC class I molecules. Science 272:67.
66. Sunyer, J. O., I. Zarkadis, M. R. Sarrias, J. D. Hansen, and J. D. Lambris. 1998. Cloning, structure, and function of two rainbow trout Bf molecules. J. Immunol. 161:4106.
67. Nonaka, M., C. Namikawa, Y. Kato, M. Sasaki, L. Salter-Cid, and M. F. Flajnik. 1997. Major histocompatibility complex gene mapping in the amphibian Xenopus implies a primordial organization. Proc. Natl. Acad. Sci. USA 94:5789.
68. Takami, K., Z. Zaleska-Rutczynska, F. Figueroa, and J. Klein. 1997. Linkage of LMP, TAP, and RING3 with Mhc class I rather than class II genes in the zebrafish. J. Immunol. 159:6052.
69. Graser, R., V. Vincek, K. Takami, and J. Klein. 1998 Analysis of zebrafish Mhc using BAC clones. Immunogenetics 47:318.
70. Kuroda, N., H. Wada, K. Naruse, A. Simada, A. Shima, M. Sasaki, and M. Nonaka. 1996. Molecular cloning and linkage analysts of the Japanese medaka fish complement Bf/C2 gene. Immunogenetics 44:459.
71. Namikawa-Yamada, C., K. Naruse, H. Wada, A. Shima, N. Kuroda, M. Nonaka, and M. Sasaki. 1997. Genetic linkage between the LMP2 and LMP7 genes in the medaka fish, a teleost. Immunogenetics 46:431.
72. Ohta, Y., S. J. Powis, W. J. Coadwell, D. E. Haliniewski, Y. Liu, H. Li, and M. F. Flajnik. 1999. Identification and genetic mapping of Xenopus TAP2 genes. Immunogenetics 49:171.
73. Namikawa, C., L. Salter-Cid, M. F. Flajnik, Y. Kato, M. Nonaka, and M. Sasaki. 1995. Isolation of Xenopus LMP-7 homologues: striking allelic diversity and linkage to MHC. J. Immunol. 155:1964.
74. Kaufman, J., and H. J. Wallny. 1996. Chicken MHC molecules, disease resistance and the evolutionary origin of birds. Curr. Top. Microbiol. Immunol. 212:129.
75. Kasahara, M., M. Vazquez, K. Sato, E. C. McKinney, and M. F. Flajnik. 1992. Evolution of the major histocompatibility complex: isolation of class II A cDNA clones from the cartilaginous fish. Proc. Natl. Acad. Sci. USA 89:6688.
76. Ohta, Y., D. E. Haliniewski, J. Hansen, and M. F. Flajnik. 1999. Isolation of transporter associated with antigen processing genes, TAP1 and TAP2, from the horned shark Heterodontus francisci. Immunogenetics. In press.
77. Kasahara, M., M. Hayashi, K. Tanaka, H. Inoko, K. Sugaya, T. Ikemura, and T. Ishibashi. 1996. Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex. Proc. Natl. Acad. Sci. USA 93:9096.
78. Beck, S., S. Abdulla, R. P. Alderton, R. J. Glynne, I. G. Gut, L. K. Hosking, A. Jackson, A. Kelly, W. R. Newell, P. Sanseau, E. Radley, K. L. Thorpe, and J. Trowsdale. 1996. Evolutionary dynamics of non-coding sequences within the class II region of the human MHC. J. Mol. Biol. 255:1.
79. Wiegertjes, G. F., E. Egberts, and R. J. M. Stet. 1997. Segregation of MHC class I and class II genes in the common carp (Cyprinus carpio L.). Dev. Comp. Immunol. 21:105.
80. Stet, R. J. M., R. Johnstone, and P. Parham. 1997. The unMHC of teleostean fish: segregation analysis of common carp and Atlantic salmon. Hereditas 127:169.