-
1
-
-
0031795756
-
Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene
-
Beil, S., J. R. Mason, K. N. Timmis, and D. H. Pieper. 1998. Identification of chlorobenzene dioxygenase sequence elements involved in dechlorination of 1,2,4,5-tetrachlorobenzene. J. Bacteriol. 180:5520-5528.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5520-5528
-
-
Beil, S.1
Mason, J.R.2
Timmis, K.N.3
Pieper, D.H.4
-
2
-
-
0022527656
-
Degradation of highly chlorinated PCBs by Pseudomonas strain LB400
-
Bopp, L. H. 1986. Degradation of highly chlorinated PCBs by Pseudomonas strain LB400. J. Ind. Microbiol. 1:23-29.
-
(1986)
J. Ind. Microbiol.
, vol.1
, pp. 23-29
-
-
Bopp, L.H.1
-
3
-
-
0031831881
-
The dioxygenase-catalyzed formation of vicinal cis-diols
-
Boyd, D. R., and G. N. Sheldrake. 1998. The dioxygenase-catalyzed formation of vicinal cis-diols. Nat. Prod. Rep. 15:309-325.
-
(1998)
Nat. Prod. Rep.
, vol.15
, pp. 309-325
-
-
Boyd, D.R.1
Sheldrake, G.N.2
-
4
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
Butler, C. S., and J. R. Mason. 1997. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 38:47-84.
-
(1997)
Adv. Microb. Physiol.
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
5
-
-
0034681304
-
Substrate binding site of naphthalene 1,2-dioxygenase: Functional implications of indole binding
-
Carredano, E., A. Karlsson, B. Kauppi, D. Choudhury, R. E. Parales, J. V. Parales, K. Lee, D. T. Gibson, H. Eklund, and S. Ramaswamy. 2000. Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J. Mol. Biol. 296:701-712.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 701-712
-
-
Carredano, E.1
Karlsson, A.2
Kauppi, B.3
Choudhury, D.4
Parales, R.E.5
Parales, J.V.6
Lee, K.7
Gibson, D.T.8
Eklund, H.9
Ramaswamy, S.10
-
6
-
-
0027368828
-
Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene
-
Erickson, B. D., and F. J. Mondello. 1993. Enhanced biodegradation of polychlorinated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene. Appl. Environ. Microbiol. 59:3858-3862.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3858-3862
-
-
Erickson, B.D.1
Mondello, F.J.2
-
7
-
-
0034029015
-
Aromatic hydrocarbon dioxygenases in environmental biotechnology
-
Gibson, D. T., and R. E. Parales. 2000. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr. Opin. Biotechnol. 11:236-243.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 236-243
-
-
Gibson, D.T.1
Parales, R.E.2
-
8
-
-
0028804381
-
Dihydroxylation and dechlorination of chlorinated biphenyls by purified biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400
-
Haddock, J. D., J. R. Horton, and D. T. Gibson. 1995. Dihydroxylation and dechlorination of chlorinated biphenyls by purified biphenyl 2, 3-dioxygenase from Pseudomonas sp. strain LB400. J. Bacteriol. 177:20-26.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 20-26
-
-
Haddock, J.D.1
Horton, J.R.2
Gibson, D.T.3
-
9
-
-
0023684064
-
A general method of in vitro preparation and specific mutagenesis of DNA fragments: Study of protein and DNA interactions
-
Higuchi, R., B. Krummel, and R. K. Saiki. 1988. A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. Nucleic Acids Res. 16:7351-7367.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 7351-7367
-
-
Higuchi, R.1
Krummel, B.2
Saiki, R.K.3
-
10
-
-
0027198281
-
Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation
-
Hofer, B., L. D. Eltis, D. N. Dowling, and K. N. Timmis. 1993. Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation Gene. 130:47-55.
-
(1993)
Gene
, vol.130
, pp. 47-55
-
-
Hofer, B.1
Eltis, L.D.2
Dowling, D.N.3
Timmis, K.N.4
-
11
-
-
0028287911
-
The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes
-
Hofer, B., S. Backhaus, and K. N. Timmis. 1994. The biphenyl/polychlorinated biphenyl-degradation locus (bph) of Pseudomonas sp. LB400 encodes four additional metabolic enzymes. Gene 144:9-16.
-
(1994)
Gene
, vol.144
, pp. 9-16
-
-
Hofer, B.1
Backhaus, S.2
Timmis, K.N.3
-
12
-
-
0001846314
-
Enzymatic hydroxylation of aromatics in enantioselective synthesis: Expanding asymmetric methodology
-
Hudlicky, T., D. Gonzalez, and D. T. Gibson. 1999. Enzymatic hydroxylation of aromatics in enantioselective synthesis: expanding asymmetric methodology. Aldrichim. Acta 32:35-62.
-
(1999)
Aldrichim. Acta
, vol.32
, pp. 35-62
-
-
Hudlicky, T.1
Gonzalez, D.2
Gibson, D.T.3
-
13
-
-
0347264753
-
Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron
-
Karlsson, A., J. V. Parales, R. E. Parales, D. T. Gibson, H. Eklund, and S. Ramaswamy. 2003. Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science 299:1039-1042.
-
(2003)
Science
, vol.299
, pp. 1039-1042
-
-
Karlsson, A.1
Parales, J.V.2
Parales, R.E.3
Gibson, D.T.4
Eklund, H.5
Ramaswamy, S.6
-
14
-
-
0032524127
-
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
-
Kauppi, B., K. Lee, E. Carredano, R. E. Parales, D. T. Gibson, H. Eklund, and S. Ramaswamy. 1998. Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure 6:571-586.
-
(1998)
Structure
, vol.6
, pp. 571-586
-
-
Kauppi, B.1
Lee, K.2
Carredano, E.3
Parales, R.E.4
Gibson, D.T.5
Eklund, H.6
Ramaswamy, S.7
-
15
-
-
0030998438
-
Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally
-
Kimura, N., A. Nishi, M. Goto, and K. Furukawa. 1997. Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally. J. Bacteriol. 179:3936-3943.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3936-3943
-
-
Kimura, N.1
Nishi, A.2
Goto, M.3
Furukawa, K.4
-
16
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. 1991. Molscript: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24:946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
17
-
-
0030941678
-
Heterologous expression of biphenyl dioxygenase-encoding genes from a gram-positive broad-spectrum polychlorinated biphenyl degrader and characterization of chlorobiphenyl oxidation by the gene products
-
McKay, D. B., M. Seeger, M. Zielinski, B. Hofer, and K. N. Timmis. 1997. Heterologous expression of biphenyl dioxygenase-encoding genes from a gram-positive broad-spectrum polychlorinated biphenyl degrader and characterization of chlorobiphenyl oxidation by the gene products. J. Bacteriol. 179:1924-1930.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1924-1930
-
-
McKay, D.B.1
Seeger, M.2
Zielinski, M.3
Hofer, B.4
Timmis, K.N.5
-
18
-
-
0030752851
-
Identification and modification of biphenyl dioxygenase sequences that determine the specificity of polychlorinated biphenyl degradation
-
Mondello, F. J., M. P. Turcich, J. H. Lobos, and B. D. Erickson. 1997. Identification and modification of biphenyl dioxygenase sequences that determine the specificity of polychlorinated biphenyl degradation. Appl. Environ. Microbiol. 63:3096-3103.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3096-3103
-
-
Mondello, F.J.1
Turcich, M.P.2
Lobos, J.H.3
Erickson, B.D.4
-
19
-
-
0034051818
-
Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
-
Parales, R. E., K. Lee, S. M. Resnick, H. Jiang, D. J. Lessner, and D. T. Gibson. 2000. Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J. Bacteriol. 182:1641-1649.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1641-1649
-
-
Parales, R.E.1
Lee, K.2
Resnick, S.M.3
Jiang, H.4
Lessner, D.J.5
Gibson, D.T.6
-
20
-
-
0033797753
-
Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: Control by phenylalanine 352 in the alpha subunit
-
Parales, R. E., S. M. Resnick, C.-L. Yu, D. R. Boyd, N. D. Sharma, and D. T. Gibson. 2000. Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. J. Bacteriol. 182:5495-5504.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5495-5504
-
-
Parales, R.E.1
Resnick, S.M.2
Yu, C.-L.3
Boyd, D.R.4
Sharma, N.D.5
Gibson, D.T.6
-
21
-
-
0030513196
-
Diverse reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp strain NCIB 9816
-
Resnick, S. M., K. Lee, and D. T. Gibson. 1996. Diverse reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp strain NCIB 9816. J. Ind. Microbiol. 17:438-457.
-
(1996)
J. Ind. Microbiol.
, vol.17
, pp. 438-457
-
-
Resnick, S.M.1
Lee, K.2
Gibson, D.T.3
-
22
-
-
0023850178
-
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
-
Saiki, R. K., D. H. Gelfand, S. Stoffel, S. J. Scharf, R. Higuchi, G. T. Horn, K. B. Mullis, and H. A. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
-
(1988)
Science
, vol.239
, pp. 487-491
-
-
Saiki, R.K.1
Gelfand, D.H.2
Stoffel, S.3
Scharf, S.J.4
Higuchi, R.5
Horn, G.T.6
Mullis, K.B.7
Erlich, H.A.8
-
23
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraint
-
Sali, A., and T. L. Blundell. 1993. Comparative protein modelling by satisfaction of spatial restraint. J. Mol. Biol. 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
24
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
25
-
-
0034956003
-
Demonstration of the importance and usefulness of manipulating non-active-site residues in protein design
-
Shimotohno, A., S. Oue, T. Yano, S. Kuramitsu, and H. Kagamiyama. 2001. Demonstration of the importance and usefulness of manipulating non-active-site residues in protein design. J. Biochem. 129:943-948.
-
(2001)
J. Biochem.
, vol.129
, pp. 943-948
-
-
Shimotohno, A.1
Oue, S.2
Yano, T.3
Kuramitsu, S.4
Kagamiyama, H.5
-
26
-
-
0026279733
-
Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system
-
Studier, F. W. 1991. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol. 219:37-44.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 37-44
-
-
Studier, F.W.1
-
27
-
-
0036285535
-
Alteration of regiospecificity in biphenyl dioxygenase by active-site engineering
-
Suenaga, H., T. Watanabe, M. Sato, Ngadiman, and K. Furukawa. 2002 Alteration of regiospecificity in biphenyl dioxygenase by active-site engineering. J. Bacteriol. 184:3682-3688.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3682-3688
-
-
Suenaga, H.1
Watanabe, T.2
Sato, M.3
Ngadiman4
Furukawa, K.5
-
28
-
-
0036667430
-
The principal determinants for the structure of the substrate-binding pocket are located within a central core of a biphenyl dioxygenase alpha subunit
-
Zielinski, M., S. Backhaus, and B. Hofer. 2002. The principal determinants for the structure of the substrate-binding pocket are located within a central core of a biphenyl dioxygenase alpha subunit. Microbiology 148:2439-2448.
-
(2002)
Microbiology
, vol.148
, pp. 2439-2448
-
-
Zielinski, M.1
Backhaus, S.2
Hofer, B.3
|