Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6

Applied and Environmental Microbiology

Volumn 68, Issue 9, 2002, Pages 4407-4415

  Peng, Xue ^a   Masai, Eiji ^a   Kitayama, Hirotaka ^a   Harada, Kyo ^a   Katayama, Yoshihiro ^a   Fukuda, Masao ^a  

^a NAGAOKA UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; DEGRADATION; DNA; ENZYMES; LIGNIN; ORGANIC COMPOUNDS;

DECARBOXYLATION;

GENES;

5 CARBOXYVANILLATE DECARBOXYLASE; BIPHENYL; GENE PRODUCT; LIGNIN; PROTEIN LIGX; PROTEIN LIGY; PROTEIN LIGZ; UNCLASSIFIED DRUG;

BIODEGRADATION; LIGNIN; MICROBIAL ACTIVITY;

ARTICLE; CONTROLLED STUDY; DECARBOXYLATION; DEMETHYLATION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME MECHANISM; GENE LOCATION; GENETIC ANALYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN DEGRADATION; REACTION ANALYSIS; SPHINGOMONAS PAUCIMOBILIS;

BACTERIAL PROTEINS; BENZALDEHYDES; CARBOXY-LYASES; CLONING, MOLECULAR; DEUTERIUM OXIDE; ESCHERICHIA COLI; LIGNIN; OXYGENASES; PHTHALIC ACIDS; RECOMBINANT PROTEINS; SPHINGOMONAS; SUBSTRATE SPECIFICITY; VANILLIC ACID;

NEGIBACTERIA; PROKARYOTA; SPHINGOMONAS; SPHINGOMONAS PAUCIMOBILIS;

EID: 0036731753     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.9.4407-4415.2002     Document Type: Article

References (37)

1. Specific-purpose plasmid cloning vectors. II. Broad-host-range, high-copy-number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas
2. Plasmids of Escherichia coli as cloning vectors
3. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
4. Purification and partial characterization of vanillate hydroxylase (decarboxylase) from Sporotrichum pulverulentum
5. Oxidative decarboxylation of vanillic acid by Sporotrichum pulverulentum
6. Broad host range DNA cloning system for gram-negative bacteria: Construction of gene bank of Rhizobium meliloti
7. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
8. The constitution and biosynthesis of lignin
9. Construction of broad host range cloning vectors for Gram-negative bacteria
10. The 4-oxalomesaconate hydratase gene, involved in the protocatechuate 4,5-cleavage pathway, is essential to vanillate and syringate degradation in Sphingomonas paucimobilis SYK-6
11. Metabolism of ferulic acid conversions to vanillic acid and guaiacol by Rhodotorula rubra
12. The metabolism of biphenyl structures in lignin by the soil bacterium (Pseudomonas paucimobilis SYK-6)
13. Cloning and expression of Pseudomonas paucimobilis SYK-6 genes involved in the degradation of vanillate and protocatechuate in P. putida
14. Cleavage of structural proteins during the assembly of the head of bacteriophage T4
15. Identification of the metabolic intermediates of phthalate by Tn5 mutants of Pseudomonas testosteroni and analysis of the 4,5-dihydroxyphthalate decarboxylase gene
16. Characterization of the Cα-dehydrogenase gene involved in the cleavage of β-aryl ether by Pseudomonas paucimobilis
17. Cloning and sequencing of the gene for a Pseudomonas paucimobilis enzyme that cleaves β-aryl ether
18. A bacterial enzyme degrading the model lignin compound β-aryl etherase is a member of the glutathione-S-transferase superfamily
19. Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds
20. Detection and localization of a new enzyme catalyzing the β-aryl ether cleavage in the soil bacterium (Pseudomonas paucimobilis SYK-6)
21. Genetic and biochemical characterization of 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase and its role in the proto-catechuate 4,5-cleavage pathway in Sphingomonas paucimobilis SYK-6
22. Genetic and biochemical characterization of a 2-pyrone-4,6-dicarboxylic acid hydrolase involved in the protocatechuate 4,5-cleavage pathway of Sphingomonas paucimobilis SYK-6
23. Cloning and sequencing of the Sphingomonas (Pseudomonas) paucimobilis gene essential for the O demethylation of vanillate and syringate
24. Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis
25. Genes in PHT plasmid encoding the initial degradation pathway of phthalate in Pseudomonas putida
26. Cloning of a Sphingomonas paucimobilis SYK-6 gene encoding a novel oxygenase that cleaves lignin-related biphenyl and characterization of the enzyme
27. Characterization of the meta-cleavage compound hydrolase gene involved in the degradation of the lignin-related biphenyl structure by Sphingomonas paucimobilis SYK-6
28. Über die chlormethylierung des o- und novo-vanillins und die gewinnung von 4-hydroxy-5-alkoxyisophthalaldehyden
29. DNA sequencing with chain-terminating inhibitors
30. λZAP: A bacteriophage λ expression vector with in vivo excision properties
31. Coexistence of two different O-demethylase systems in lignin metabolism by Sphingomonas paucimobilis SYK-6: Cloning and sequencing of the lignin biphenyl-specific O-demethylase (LigX) gene
32. Crystal structure of an aromatic-ring-opening dioxygenase LigAB which is a protocatechuate 4,5-dioxygenase
33. Purification and molecular cloning of rat 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
34. Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors