Implications of age and diet on canine cerebral cortex transcription

Neurobiology of Aging

Volumn 30, Issue 8, 2009, Pages 1314-1326

  Swanson, Kelly S ^a   Vester, Brittany M ^a   Apanavicius, Carolyn J ^a   Kirby, Naomi A ^a   Schook, Lawrence B ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Aging; Brain; Canine; Microarray

Indexed keywords

CALCIUM; MESSENGER RNA; NEUROPEPTIDE;

ADULT ANIMAL; AGE; AGED; AGING; ANIMAL EXPERIMENT; ANIMAL FOOD; ANIMAL TISSUE; ARTICLE; BRAIN CORTEX; BRAIN TISSUE; CALCIUM HOMEOSTASIS; COGNITION; CONTROLLED STUDY; DIETARY INTAKE; DOG; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; INFLAMMATION; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STRESS; SYNAPTIC TRANSMISSION;

AGING; ANIMALS; CEREBRAL CORTEX; CLUSTER ANALYSIS; DIET; DOGS; FATTY ACIDS; FEMALE; GENE EXPRESSION; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

EID: 67349158710     PISSN: 01974580     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neurobiolaging.2007.10.017     Document Type: Article

References (73)

1. AAFCO, 2007. Official Publication. Association of American Feed Control Officials, Inc, Oxford, IN.
2. Barrachina M., Maes T., Buesa C., and Ferrer I. Lysosome-associated membrane protein-1 (LAMP-1) in Alzheimer's disease. Neuropathol. Appl. Neurobiol. 32 5 (2006) 505-516
3. Benjamini Y., and Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. Ser. B 57 1 (1995) 289-300
4. Bi X., Head E., Cotman C.W., and Lynch G. Spatial patterns of mammalian brain aging: distribution of cathepsin D-immunoreactive cell bodies and dystrophic dendrites in aging dogs resembles that in Alzheimer's disease. J. Comp. Neurol. 464 3 (2003) 371-381
5. Bolstad, B.M., 2004. Low Level Analysis of High-density Oligonucleotide Array Data: Background, Normalization and Summarization. PhD Dissertation. University of California, Berkeley, CA.
6. Borras D., Ferrer I., and Pumarola M. Age-related changes in the brain of the dog. Vet. Pathol. 36 3 (1999) 202-211
7. Butler D., and Bahr B.A. Oxidative stress and lysosomes: CNS-related consequences and implications for lysosomal enhancement strategies and induction of autophagy. Antiox. Redox. Signal 8 1-2 (2006) 185-196
8. Chan A.D.F., Nippak P.M., Murphey H., Ikeda-Douglas C.J., Muggenburg B.A., Head E., Cotman C.W., and Milgram N.W. Visuospatial impairments in aged canines (Canis familiaris): the role of cognitive-behavioral flexibility. Behav. Neurosci. 116 3 (2002) 443-454
9. Chronwall B.M., Chase T.N., and O'Donohue T.L. Coexistence of neuropeptide Y and somatostatin in rat and human cortical and rat hypothalamic neurons. Neurosci. Lett. 52 3 (1984) 213-217
10. Colle M.-A., Duyckaerts C., Laquerriére A., Pradier L., Czech C., Checler F., and Hauw J.-J. Laminar specific loss of isocortical presenilin 1 immunoreactivity in Alzheimer's disease. Correlations with the amyloid load and the density of tau-positive neurofibrillary tangles. Neuropathol. Appl. Neurobiol. 26 2 (2000) 117-123
11. Cotman C.W., Head E., Muggenburg B.A., Zicker S., and Milgram N.W. Brain aging in the canine: a diet enriched with antioxidants reduces cognitive dysfunction. Neurobiol. Aging 23 5 (2002) 809-818
12. Croll S., Ip N., Lindsay R., and Wiegand S. Expression of BDNF and TRKB as a function of age and cognitive performance. Brain Res. 812 1-2 (1998) 200-208
13. Culhane A.C., Thioulouse J., Perriere G., and Higgins D.G. MADE4: an R package for multivariate analysis of gene expression data. Bioinformatics 21 11 (2005) 2789-2790
14. Cummings B.J., Satou T., Head E., Milgram N.W., Cole G.M., Savage M.J., Podlisny M.B., Selkoe D.J., Siman R., Greenberg B.D., and Cotman C.W. Diffuse plaques contain c-terminal Aβ42 and not Aβ40: evidence from cats and dogs. Neurol. Aging 17 4 (1996) 653-659
15. Cummings J.L., Vinters H.V., Cole G.M., and Khachaturian Z.S. Alzheimer's disease. Etiologies, pathophysiology, cognitive reserve, and treatment opportunities. Neurol 51 Suppl. 1 (1998) S2-S17
16. Cutler R.G., Kelly J., Storie K., Pedersen W.A., Tammara A., Hatanpaa K., Troncosco J.C., and Mattson M.P. Involvement of oxidative stress-induced abnormalities in ceramide and cholesterol metabolism in brain aging and Alzheimer's disease. Proc. Natl. Acad. Sci. 101 7 (2004) 2070-2075
17. Davis K.L., Mohs R.C., Marin D.B., Purohit D.P., Perl D.P., Lantz M., Austin G., and Haroutunian V. Neuropeptide abnormalities in patients with early Alzheimer disease. Arch. Gen. Psychiatry 56 11 (1999) 981-987
18. Diehn M., Sherlock G., Binkley G., Jin H., Matese J.C., Hernandez-Boussard T., Rees C.A., Cherry J.M., Botstein D., Brown P.O., and Alizadeh A.A. SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Res. 31 1 (2003) 219-223
19. Dournaud P., Cervera-Pierot P., Hirsch E., Javoy-Agid F., Kordon C.L., Agid Y., and Epelbaum J. Somatostatin messenger RNA-containing neurons in Alzheimer's disease: an in situ hybridization study in hippocampus, parahippocampal cortex and frontal cortex. Neuroscience 61 4 (1994) 755-764
20. Duan W., and Mattson M.P. Dietary restriction and 2-deoxyglucose administration improve behavioral outcome and reduce degeneration of dopaminergic neurons in models of Parkinson's disease. J. Neurosci. Res. 57 2 (1999) 195-206
21. Erraji-Benchekroun L., Underwood M.D., Arango V., Galfalvy H., Pavlidis P., Smyrniotopoulos P., Mann J.J., and Sibille E. Molecular aging in human prefrontal cortex is selective and continuous throughout adult life. Biol. Psychiatry 57 5 (2005) 549-558
22. Ferrer I., Barrachina M., Puig B., Martinez de Lagrán M., Marti E., Avila J., and Dierssen M. Constitutive Dyrk1A is abnormally expressed in Alzheimer disease, Down syndrome, Pick disease, and related transgenic models. Neurobiol. Dis. 20 2 (2005) 392-400
23. Finkel T., and Holbrook N. Oxidants, oxidative stress and the biology of ageing. Nature 408 6809 (2000) 239-247
24. Gautier L., Cope L., Bolstad B.M., and Irizarry R.A. Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20 3 (2004) 307-315
25. ®, 2002. Expression Analysis Data Analysis Fundamentals Manual, Affymetrix, Santa Clara, CA.
26. Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A.J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J.Y.H., and Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5 10 (2004) R80.1-R80.16
27. Hama E., and Saido T.C. Etiology of sporadic Alzheimer's disease: somatostatin, neprilysin, and amyloid β peptide. Med. Hyp. 65 3 (2005) 498-500
28. Hattiangady B., Rao M.S., Shetty G.A., and Shetty A.K. Brain-derived neurotrophic factor, phosphorylated cyclic AMP response element binding protein and neuropeptide Y decline as early as middle age in the dentate gyrus and CA1 and CA3 subfields of the hippocampus. Exp. Neurol. 195 2 (2005) 353-371
29. Hayashi M., Yamashita A., and Shimizu K. Somatostatin and brain-derived neurotrophic factor mRNA expression in the primate brain: decreased levels of mRNA during aging. Brain Res. 749 2 (1997) 283-289
30. Hebert L.E., Scherr P.A., Bienias J.L., Bennett D.A., and Evans D.A. Alzheimer disease in the US population. Prevalence estimates using the 2000 census. Arch. Neurol. 60 8 (2003) 1119-1122
31. Heilig M., McLeod S., Koob G.K., and Britton K.T. Anxiolytic-like effect of neuropeptide Y (NPY), but not other peptides in an operant conflict test. Regul. Peptides 41 1 (1992) 61-69
32. Ingram D.K., Weindruch R., Spangler E.L., Freeman J.R., and Walford R.L. Dietary restriction benefits learning and motor performance of aged mice. J. Gerontol. 42 1 (1987) 78-81
33. Irizarry R.A., Hobbs B., Collin F., Beazer-Barclay Y.D., Antonellis K.J., Scherf U., and Speed T.P. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4 2 (2003) 249-264
34. Jarvik G.P., Wijsman E.M., Kukull W.A., Schellenberg G.D., Yu C., and Larson E.B. Interactions of apolipoprotein E genotype, total cholesterol level, age, and sex in prediction of Alzheimer's disease: a case-control study. Neurology 45 6 (1995) 1092-1096
35. Jiang C.H., Tsien J.Z., Schultz P.G., and Hu Y. The effects of aging on gene expression in the hypothalamus and cortex of mice. Proc. Natl. Acad. Sci. 98 4 (2001) 1930-1934
36. Kiatipattanasakul W., Nakamura S.-I., Hossain M.M., Nakayama H., Uchino T., Shumiya S., Goto N., and Doi K. Apoptosis in the aged dog brain. Acta Neuropathol. 92 3 (1996) 242-248
37. Kuzmuk K.N., Swanson K.S., Tappenden K.A., Schook L.B., and Fahey Jr. G.C. Diet and age affect intestinal morphology and large bowel fermentative end-product concentrations in senior and young adult dogs. J. Nutr. 135 8 (2005) 1940-1945
38. Lapage G., and Roy C.C. Direct transesterfication of all classes of lipids in a one-step reaction. J. Lipid Res. 27 1 (1986) 114-120
39. Lee C.-K., Weindruch R., and Prolla T.A. Gene-expression profile of the ageing brain in mice. Nat. Genet. 25 3 (2000) 294-297
40. Link C.D., Taft A., Kapulkin V., Duke K., Kim S., Fei Q., Wood D.E., and Sahagan B.G. Gene expression analysis in a transgenic Caenorhabditis elegans Alzheimer's disease model. Neurobiol. Aging 24 3 (2003) 397-413
41. Lovinger D.M., Colley P.A., Akers R.F., Nelson R.B., and Routtenberg A. Direct relation of long-term synaptic potentiation to phosphorylation of membrane protein F1, a substrate for membrane protein kinase C. Brain Res. 399 2 (1986) 205-211
42. Lu T., Pan Y., Kao S.-Y., Li C., Kohane I., Chan J., and Yankner B.A. Gene regulation and DNA damage in the ageing human brain. Nature 429 6994 (2004) 883-891
43. 2+ homeostasis in Alzheimer's disease. Trends Neurosci. 16 10 (1993) 409-414
44. Meldrum B.S. Glutatmate as a neurotransmitter in the brain: Review of physiology and pathology. J. Nutr. 130 4 (2000) 1007S-1015S
45. Merlo Pich E.M., Messori B., Zoli M., Ferragut P., Biagini G., Fuxe K., and Agnati L.F. Feeding and drinking responses to neuropeptide Y injections in the paraventricular hypothalmic nucleus of aged rats. Brain Res. 575 2 (1992) 265-271
46. Milgram N.W., Head E., Weiner E., and Thomas E. Cognitive functions and aging in the dog: acquisition of nonspatial visual tasks. Behav. Neurosci. 108 1 (1994) 57-68
47. Miranda R., Sohrabji F., and Toran-Allerand C. Neuronal colocalization of mRNAs for neurotrophins and their receptors in developing central nervous system suggests a potential for autocrine interactions. Proc. Natl. Acad. Sci. U.S.A. 90 14 (1993) 6439-6443
48. Molteni R., Barnard R.J., Ying Z., Roberts C.K., and Gomez-Pinilla F. A high-fat, refined sugar diet reduces hippocampal brain-derived neurotrophic factor, neuronal plasticity, and learning. Neuroscience 112 4 (2002) 803-814
49. Moroi-Fetters S.E., Mervis R.F., London E.D., and Ingram D.K. Dietary restriction suppresses age-related changes in dendritic spines. Neurobiol. Aging 10 4 (1989) 317-322
50. Patronek G.J., Waters D.J., and Glickman L.T. Comparative longevity of pet dogs and humans: implications for gerontology research. J. Gerontol. A 52 3 (1997) B171-B178
51. Phillips H.S., Hains J.M., Armanini M., Laramee G.R., Johnson S.A., and Winslow J.W. BDNF mRNA is decreased in the hippocampus of individuals with Alzheimer's disease. Neuron 7 5 (1991) 695-702
52. Ploner, A., 2006. Heatplus: A Heat Map Displaying Covariates and Coloring Clusters. R Package Version 2.4.0.
53. Rothstein J.D., Van Kammen M., Levey A.I., Martin L.J., and Kunci R.W. Selective loss of glial glutamate transporter GLT-1 in amyotrophic lateral sclerosis. Ann. Neurol. 38 1 (1995) 73-84
54. Saito T., Iwata N., Tsubuki S., Takaki Y., Takano J., Huang S.-M., Suemoto T., Higuchi M., and Saido T.C. Somatostatin regulates brain amyloid β peptide Aβ42 through modulation of proteolytic degradation. Nat. Med. 11 4 (2005) 434-439
55. Sanvicens N., Gomez-Vicente V., Masip I., Messeguer A., and Cotter T.G. Oxidative-stress induced apoptosis in retinal photoreceptor cells is mediated by calpains and caspases and blocked by the oxygen radical scavenger CR-6. J. Biol. Chem. 279 38 (2004) 39268-39278
56. Schoenebeck B., Bader V., Zhu X.R., Schmitz B., Lübbert H., and Stichel C.C. Sgk1, a cell survival response in neurodegenerative diseases. Mol. Cell Neurosci. 30 (2005) 249-264
57. Siwak C.T., Tapp P.D., and Milgram N.W. Effect of age and level of cognitive function on spontaneous and exploratory behavior in the beagle dog. Learn. Mem. 8 6 (2001) 317-325
58. Siwak C.T., Tapp P.D., Murphey H.L., Zicker S.C., Muggenburg B.A., Head E., Cotman C.W., and Milgram N.W. Locomotor activity rhythms in dogs vary with age and cognitive function. Behav. Neurosci. 117 4 (2003) 813-824
59. Smyth G.K. Statistical Applications in Genetics and Molecular Biology. Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments (2004), Berkely Electronic Press, Berkely, CA 3(1) Article 3
60. Sohrabji F., Miranda R.C.G., and Toran-Allerand C.D. Identification of a putative estrogen response element in the gene encoding brain-derived neurotrophic factor. Proc. Natl. Acad. Sci. 92 24 (1995) 11110-11114
61. Su M.Y., Head E., Brooks W.M., Wang Z., Muggenburg B.A., Adam G.E., Sutherland R., Cotman C.W., and Nalcioglu O. Magnetic resonance imaging of anatomic and vascular characteristics in a canine model of human aging. Neurobiol. Aging 19 5 (1998) 479-485
62. Swanson K.S., Kuzmuk K.N., Schook L.B., and Fahey Jr. G.C. Diet affects nutrient digestibility, hematology, and serum chemistry of senior and weanling dogs. J. Anim. Sci. 82 6 (2004) 1713-1724
63. Tahara K., Kim H.-D., Jin J.-J., Maxwell J.A., Li L., and Fukuchi K. Role of toll-like receptor signaling in Aβ uptake and clearance. Brain 129 11 (2006) 3006-3019
64. Tapp P.D., Siwak C.T., Estrada J., Head E., Muggenburg B.A., Cotman C.W., and Milgram N.W. Size and reversal learning in the beagle dog as a measure of executive function and inhibitory control in aging. Learn. Mem. 10 1 (2003) 64-73
65. Tapp P.D., Siwak C.T., Gao F.Q., Chiou J.-Y., Black S.E., Head E., Muggenburg B.A., Cotman C.W., Milgram N.W., and Su M.-Y. Frontal lobe volume, function, and β-amyloid pathology in a canine model of aging. J. Neurosci. 24 38 (2004) 8205-8213
66. Thibault O., Porter N.M., Chen K.C., Blalock E.M., Kaminker P.G., Clodfelter G.V., Brewer L.D., and Landfield P.W. Calcium dysregulation in neuronal aging and Alzheimer's disease: History and new directions. Cell Calcium 24 5-6 (1998) 417-433
67. Wancata J., Musalek M., Alexandrowicz R., and Krautgartner M. Number of dementia sufferers in Europe between the years of 2000 and 2050. Eur. Psychiatry 18 6 (2003) 306-313
68. Weindruch R., Kayo T., Lee C.-K., and Prolla T.A. Gene expression profiling of aging using DNA microarrays. Mech. Ageing Dev. 123 2-3 (2002) 177-193
69. Weindruch R., and Walford R.L. The Retardation of Aging and Disease by Dietary Restriction (1988), C C Thomas, Springfield, IL
70. Widdowson P.S., Ordway G.A., and Harris A.E. Reduced neuropeptide Y concentrations in suicide brain. J. Neurochem. 59 1 (1992) 73-80
71. Widerlöv E., Lindstrom L.H., Wahlstedt C., and Ekman R. Neuropeptide Y and peptide YY as possible cerebrospinal fluid markers for major depression and schizophrenia, respectively. J. Psychiatry Res. 22 1 (1988) 69-79
72. Xia Z., and Storm D.R. The role of calmodulin as a signal integrator for synaptic plasticity. Nat. Rev. 6 4 (2005) 267-276
73. Zhang J., Hebert J.R., and Muldoon M.F. Dietary fat intake is associated with psychosocial and cognitive functioning of school-aged children in the United States. J. Nutr. 135 8 (2005) 1967-1973