Detection and verification of malting quality QTLs using wild barley introgression lines

Theoretical and Applied Genetics

Volumn 118, Issue 8, 2009, Pages 1411-1427

  Schmalenbach, Inga ^a   Pillen, Klaus ^a,b  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMYLASE ACTIVITIES; FIELD TESTS; GENETIC BACKGROUNDS; GENETIC BASIS; GENETIC EFFECTS; HORDEUM VULGARE; INTROGRESSION LINES; MALTING QUALITIES; QTL EFFECTS; QUALITY PARAMETERS; QUANTITATIVE TRAIT LOCUS; WILD BARLEIES;

PLANTS (BOTANY);

AMYLASE;

ARTICLE; BARLEY; CHROMOSOME MAP; CROP; CROSS BREEDING; ENVIRONMENT; GENETIC MARKER; GENETICS; METHODOLOGY; PLANT CHROMOSOME; PLANT GENE; QUANTITATIVE TRAIT LOCUS; SEASON;

ALPHA-AMYLASES; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROPS, AGRICULTURAL; CROSSES, GENETIC; ENVIRONMENT; GENES, PLANT; GENETIC MARKERS; HORDEUM; QUANTITATIVE TRAIT LOCI; SEASONS;

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. SPONTANEUM;

EID: 67349149963     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-0991-8     Document Type: Article

References (69)

1. H Ahokas L Naskali 1990 Geographic variation of α-amylase, β-amylase, β-glucanase, pullulanase and chitinase activity in germinating Hordeum spontaneum from Israel and Jordan Genetica 82 73 78
2. H Ahokas L Naskali 1990 Variation of α-amylase, β-amylase, β-glucanase, pullulanase, proteinase and chitinase activity in germinated samples of the wild progenitor of barley J Inst Brew 96 27 31
3. AR Barr SP Jefferies S Broughton KJ Chalmers JM Kretschmer WJR Boyd HM Collins S Roumeliotis SJ Logue SJ Coventry DB Moody BJ Read D Poulsen RCM Lance GJ Platz RF Park JF Panozzo A Karakousis P Lim AP Verbyla PJ Eckermann 2003 Mapping and QTL analysis of the barley population Alexis × Sloop Aust J Agr Res 54 1117 1123
4. AR Barr A Karakousis RCM Lance SJ Logue S Manning KJ Chalmers JM Kretschmer WJR Boyd HM Collins S Roumeliotis SJ Coventry DB Moody BJ Read D Poulsen CD Li GJ Platz PA Inkerman JF Panozzo BR Cullis AB Smith P Lim P Langridge 2003 Mapping and QTL analysis of the barley population Chebec × Harrington Aust J Agr Res 54 1125 1130
5. K Bomblies JF Doebley 2006 Pleiotropic effects of the duplicate maize FLORICAULA/LEAFY genes zfl1 and zfl2 on the traits under selection during maize domestication Genetics 172 519 531
6. DW Choi MC Koag TJ Close 2000 Map locations of barley Dhn genes determined by gene-specific PCR Theor Appl Genet 101 350 354
7. DW Choi EM Rodriguez TJ Close 2002 Barley Cbf3 gene identification, expression pattern, and map location Plant Physiol 129 1781 1787
8. SE Clark PM Hayes CA Henson 2003 Effects of single nucleotide polymorphisms in beta-amylase 1 alleles from barley on functional properties of the enzymes Plant Physiol Biochem 41 798 804
9. HM Collins JF Panozzo SJ Logue SP Jefferies AR Barr 2003 Mapping and validation of chromosome regions associated with high malt extract in barley (Hordeum vulgare L.) Aust J Agr Res 54 1223 1240
10. JM Costa A Corey PM Hayes C Jobet A Kleinhofs A Kopisch-Obusch SF Kramer D Kudrna M Li O Riera-Lizarazu K Sato P Szucs T Toojinda MI Vales RI Wolfe 2001 Molecular mapping of the Oregon Wolfe barleys: a phenotypically polymorphic doubled-haploid population Theor Appl Genet 103 415 424
11. SJ Coventry AR Barr JK Eglinton GK McDonald 2003 The determinants and genome locations influencing grain weight and size in barley (Hordeum vulgare L.) Aust J Agr Res 54 1103 1115
12. A Distelfeld A Korol J Dubcovsky C Uauy T Blake T Fahima 2008 Colinearity between the barley grain protein content (GPC) QTL on chromosome arm 6HS and the wheat Gpc-B1 region Mol Breed 22 25 38
13. CW Dunnett 1955 A multiple comparison procedure for comparing several treatments with a control J Am Stat Assoc 50 1096 1121
14. MJ Edney DE Mather 2004 Quantitative trait loci affecting germination traits and malt friability in a two-rowed by six rowed barley cross J Cereal Sci 39 283 290
15. I Eduardo P Arus AJ Monforte J Obando JP Fernandez-Trujillo JA Martinez AL Alarcon JM Alvarez E van der Knaap 2007 Estimating the genetic architecture of fruit quality traits in melon using a genomic library of near isogenic lines J Am Soc Hortic Sci 132 80 89
16. LC Emebiri DB Moody JF Panozzo KJ Chalmers JM Kretschmer GA Ablett 2003 Identification of QTLs associated with variations in grain protein concentration in two-row barley Aust J Agr Res 54 1211 1221
17. LC Emebiri DB Moody JF Panozzo BJ Read 2004 Mapping of QTL for malting quality attributes in barley based on a cross of parents with low grain protein concentration Field Crops Res 87 195 205
18. LC Emebiri DB Mood R Horsley J Panozzo BJ Read 2005 The genetic control of grain protein content variation in a doubled haploid population derived from a cross between Australian and North American two-rowed barley lines J Cereal Sci 41 107 114
19. EBC, European Brewery Convention (2005) Analytica-EBC. Fachverlag Hans Carl, Nürnberg, Germany, ISBN: 3-418-00759-7
20. KC Falke Z Sušić B Hackauf V Korzun J Schondelmaier P Wilde P Wehling H Wortmann R Mank J van der Rouppe Voort HP Maurer T Miedaner HH Geiger 2008 Establishment of introgression libraries in hybrid rye (Secale cereale L.) from an Iranian primitive accession as a new tool for rye breeding and genomics Theor Appl Genet 117 641 652
21. JP Fernandez-Trujillo J Obando JA Martinez AL Alarcon I Eduardo P Arus AJ Monforte 2007 Mapping fruit susceptibility to postharvest physiological disorders and decay using a collection of near-isogenic lines of melon J Am Soc Hortic Sci 132 739 748
22. GP Fox JF Panozzo CD Li RCM Lance PA Inkerman RJ Henry 2003 Molecular basis of barley quality Aust J Agr Res 54 1081 1101
23. W Gao JA Clancy F Han BL Jones A Budde DM Wesenberg A Kleinhofs SE Ullrich North American Barley Genome Project 2004 Fine mapping of a malting-quality QTL complex near the chromosome 4H S telomere in barley Theor Appl Genet 109 750 760
24. S Griffiths RP Dunford G Coupland DA Laurie 2003 The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis Plant Physiol 131 1855 1867
25. JR Guerin RCM Lance W Wallace 1992 Chromosomal location of a barley malt endopeptidase gene Genet Res 59 179 181
26. JR Guerin RCM Lance AHD Brown DC Abbott 1994 Mapping of malt endopeptidase, NADH diaphorase and esterase loci on barley chromosome 3L Plant Breed 112 279 284
27. F Han SE Ullrich S Chirat S Menteur L Jesting O Sarrafi MP Hayes BL Jones TK Blake D Wesenberg A Kleinhofs A Kilian 1995 Mapping of β-glucan content and β-glucanase activity loci in barley grain and malt Theor Appl Genet 91 921 927
28. F Han SE Ullrich A Kleinhofs BL Jones PM Hayes DM Wesenberg 1997 Fine structure mapping of the barley chromosome-1 centromere region containing malting-quality QTLs Theor Appl Genet 95 903 910
29. F Han JA Clancy BL Jones DM Wesenberg A Kleinhofs SE Ullrich 2004 Dissection of a malting quality QTL region on chromosome 1 (7H) of barley Mol Breed 14 339 347
30. Hayes PM, Castro A, Marquez-Cedillo L, Corey A, Henson C, Jones BL, Kling J, Mather D, Matus I, Rossi C, Sato K (2003) Genetic diversity for quantitatively inherited agronomic and malting quality traits. In: Von Bothmer R, Van Hintum T, Knupffer H, Sato K (eds) Diversity in barley (Hordeum vulgare). Elsevier, New York, pp 147-169
31. SAS Institute (2006) The SAS Enterprise Guide for Windows, release 4.1. SAS Institute, Cary, NC, USA
32. Kleinhofs A, Graner A (2001) An integrated map of the barley genome. Kluwer, Dordrecht, pp 187-199
33. EMK Koinange SP Singh P Gepts 1996 Genetic control of the domestication syndrome in common bean Crop Sci 36 1037 1045
34. DA Laurie N Pratchett JH Bezant JW Snape 1995 RFLP mapping of 5 major genes and 8 quantitative trait loci controlling flowering time in a winter × spring barley (Hordeum vulgare L.) cross Genome 38 575 585
35. 3DH population of spring barley Theor Appl Genet 110 356 363
36. SW Liu SY Zhao F Chen GM Xia 2007 Generation of novel high quality HMW-GS genes in two introgression lines of Triticum aestivum/Agropyron elongatum BMC Evol Biol 7 76
37. LC MacLeod RCM Lance AHD Brown 1991 Chromosomal mapping of the Glb1 locus encoding (1→3, 1→4)-β-D-glucan 4-glucanhydrolase EI in barley J Cereal Sci 13 291 298
38. LA Marquez-Cedillo PM Hayes BL Jones A Kleinhofs WG Legge BG Rossnagel K Sato E Ullrich DM Wesenberg The North American Barley Genome Project 2000 QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups Theor Appl Genet 101 173 184
39. DE Mather NA Tinker DE LaBerge M Edney BL Jones BG Rossnagel WG Legge KG Briggs RB Irvine DE Falk KJ Kasha 1997 Regions of the genome that affect grain and malt quality in a North American two-row barley cross Crop Sci 37 544 554
40. I Matus A Corey T Filichkin PM Hayes MI Vales J Kling O Riera-Lizarazu K Sato W Powell R Waugh 2003 Development and characterization of recombinant chromosome substitution lines (RCSLs) using Hordeum vulgare subsp spontaneum as a source of donor alleles in a Hordeum vulgare subsp vulgare background Genome 46 1010 1023
41. S Mickelson D See FD Meyer JP Garner CR Foster TK Blake AM Fischer 2003 Mapping of QTL associated with nitrogen storage and remobilization in barley (Hordeum vulgare L.) leaves J Exp Bot 54 801 812
42. MEBAK, Mitteleuropäische Brautechnische Analysenkommission (1997) Methodensammlung der Mitteleuropäischen Analysenkommission. Band I, 3. Auflage: Rohstoffe - Wasser, Gerste, Rohfrucht, Malz, Hopfen und Hopfenprodukte, ISBN 3-9805814-0-3
43. J Obando JP Fernandez-Trujillo JA Martinez AL Alarcon I Eduardo P Arus AJ Monforte 2008 Identification of melon fruit quality quantitative trait loci using near-isogenic lines J Am Soc Hortic Sci 133 139 151
44. A Oziel PM Hayes FQ Chen B Jones 1996 Application of quantitative trait locus mapping to the development of winter-habit malting barley Plant Breed 115 43 51
45. JF Panozzo PJ Eckermann DE Mather DB Moody CK Black HM Collins AR Barr P Lim BR Cullis 2007 QTL analysis of malting quality traits in two barley populations Aust J Agr Res 58 858 866
46. S Pelger T Sall BO Bengtsson 1993 Evolution of hordein gene organization in three Hordeum species Hereditas 119 219 231
47. K Pillen A Zacharias J Léon 2003 Advanced backcross QTL analysis in barley (Hordeum vulgare L.) Theor Appl Genet 107 340 352
48. K Pillen A Zacharias J Léon 2004 Comparative AB-QTL analysis in barley using a single exotic donor of Hordeum vulgare ssp. spontaneum Theor Appl Genet 108 1591 1601
49. W Powell WTB Thomas E Baird P Lawrence A Booth B Harrower JW McNicol R Waugh 1997 Analysis of quantitative traits in barley by the use of amplified fragment length polymorphisms Heredity 79 48 59
50. SJ Rae M Macaulay L Ramsay F Leigh D Matthews DM O'Sullivan P Donini PC Morris W Powell DF Marshall R Waugh WTB Thomas 2007 Molecular barley breed Euphytica 158 295 303
51. N Rostoks S Mudie L Cardle J Russell L Ramsay A Booth JT Svensson SI Wanamaker H Walia EM Rodriguez PE Hedley H Liu J Morris TJ Close DF Marshall R Waugh 2005 Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress Mol Genet Genomics 274 515 527
52. N Rostoks L Ramsay K MacKenzie L Cardle PR Bhat ML Roose JT Svensson N Stein RK Varshney DF Marshall A Graner TJ Close R Waugh 2006 Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties Proc Natl Acad Sci USA 103 18656 18661
53. MC Rousseaux CM Jones D Adams R Chetelat A Bennett A Powell 2005 QTL analysis of fruit antioxidants in tomato using Lycopersicon pennellii introgression lines Theor Appl Genet 111 1396 1408
54. I Schmalenbach N Körber K Pillen 2008 Selecting a set of wild barley introgression lines and verification of QTL effects for resistance to powdery mildew and leaf rust Theor Appl Genet 117 1093 1106
55. I Schmalenbach J Léon K Pillen 2009 Identification and verification of QTLs for agronomic traits using wild barley introgression lines Theor Appl Genet 118 483 497
56. D See V Kanazin K Kephart T Blake 2002 Mapping genes controlling variation in barley grain protein concentration Crop Sci 42 680 685
57. WTB Thomas 2003 Prospects for molecular breeding of barley Ann Appl Biol 142 1 12
58. WTB Thomas W Powell R Waugh KJ Chalmers UM Barua P Jack V Lea BP Forster JS Swanston RP Ellis PR Hanson RCM Lance 1995 Detection of quantitative trait loci for agronomic, yield, grain and disease characters in spring barley (Hordeum vulgare L.) Theor Appl Genet 91 1037 1047
59. A Turner J Beales S Faure RP Dunford DA Laurie 2005 The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley Science 310 1031 1034
60. C Uauy JC Brevis J Dubcovsky 2006 The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat J Exp Bot 57 2785 2794
61. M von Korff H Wang J Léon K Pillen 2004 Development of candidate introgression lines using an exotic barley accession (Hordeum vulgare ssp. spontaneum) as donor Theor Appl Genet 109 1736 1745
62. M von Korff H Wang J Léon K Pillen 2008 AB-QTL analysis in spring barley: III. Identification of exotic alleles for the improvement of malting quality in spring barley (H. vulgare ssp. spontaneum) Mol Breed 21 81 93
63. NF Weeden 2007 Genetic changes accompanying the domestication of Pisum sativum: is there a common genetic basis to the 'domestication syndrome' for legumes Ann Bot-London 100 1017 1025
64. P Wenzl HB Li J Carling MX Zhou H Raman E Paul P Hearnden C Maier L Xia V Caig J Ovesna M Cakir D Poulsen JP Wang R Raman KP Smith GJ Muehlbauer KJ Chalmers A Kleinhofs E Huttner A Kilian 2006 A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7 206
65. 2 population of a cross between Oryza sativa and O. rufipogon Theor Appl Genet 98 243 251
66. D Zamir 2001 Improving plant breeding with exotic genetic libraries Nat Rev Genet 2 983 989
67. WS Zhang X Li JB Liu 2007 Genetic variation of Bmy1 alleles in barley (Hordeum vulgare L.) investigated by CAPS analysis Theor Appl Genet 114 1039 1050
68. TQ Zheng JL Xu ZK Li HQ Zhai JM Wan 2007 Genomic regions associated with milling quality and grain shape identified in a set of random introgression lines of rice (Oryza sativa L.) Plant Breed 126 158 163
69. S Zwickert-Menteur L Jestin G Branlard 1996 Amy2 polymorphism as a possible marker of β-glucanase activity in barley (Hordeum vulgare L) J Cereal Sci 24 55 63