Genetic variation of Bmy1 alleles in barley (Hordeum vulgare L.) investigated by CAPS analysis

Theoretical and Applied Genetics

Volumn 114, Issue 6, 2007, Pages 1039-1050

  Zhang, Wen Sheng ^a   Li, Xia ^a   Liu, Jian Bing ^b  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^b Center for Crop Introduction and Breeding of Hebei Province   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; ENZYMES; POLYMORPHISM;

AMPLIFIED POLYMORPHIC SEQUENCE (CAPS) ANALYSIS; GENETIC VARIATION;

GENETIC ENGINEERING;

BETA AMYLASE; PLANT DNA; RESTRICTION ENDONUCLEASE; VEGETABLE PROTEIN;

ALLELE; ARTICLE; BARLEY; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; DNA TEMPLATE; ENZYME STABILITY; GENE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HEAT; ISOELECTRIC FOCUSING; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE;

ALLELES; BETA-AMYLASE; DNA RESTRICTION ENZYMES; DNA, PLANT; ENZYME STABILITY; GENES, PLANT; GEOGRAPHY; HEAT; HORDEUM; ISOELECTRIC FOCUSING; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PLANT PROTEINS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TEMPLATES, GENETIC; VARIATION (GENETICS);

ENZYMES; FARM CROPS; GENES; GENETIC ENGINEERING;

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 34047195447     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0497-6     Document Type: Article

References (44)

1. Badr A, Müller K, Schäfer-Pregl R, El Rabey H, Effgen S, Ibrahim HH, Pozzi C, Rohde W, Salamini F (2000) On the origin and domestication history of barley (Hordeum vulgare). Mol Biol Evol 17(4):499-510
2. Bakhteyev FKH (1964) Origin and phylogeny of barley. In: Broekhuizen S, Dantuma G, Lamberts H, Lange W (eds) Barley genetics I. PUDOC, Wageningen, pp 1-18
3. Dai X, Zhang Q (1989) Genetic diversity of six isozyme loci in barley from Tibet. Theor Appl Genet 78:281-286
4. Eglinton JK, Langridge P, Evans DE (1998) Thermostability variation in alleles of barley beta-amylase. J Cereal Sci 28:301-309
5. Erkkilä MJ (1999) Intron III-specific markers for screening of β-amylase alleles in barley cultivars. Plant Mol Bio Rep 17:139-147
6. Erkkilä MJ, Ahokas H (2001) Special barley β-amylase allele in a Finnish landrace line HA52 with high grain enzyme activity. Hereditas 134:91-95
7. Erkkilä MJ, Leah R, Ahokas H, Cameron-Mills V (1998) Allele-dependent barley grain β-amylase activity. Plant Physiol 117(2):679-685
8. Fu DX, Ruan RW, Dai XM, Liu YM (2000a) A study on ancient barley, wheat and millet discovered at Changguo of Tibet (in Chinese with English abstract). ASSS Agronom Sin 26(4):392-398
9. Fu DX, Xu TW, Feng ZY (2000b) The ancient carbonized barley (Hordeum vulgare L. Var. nudum) kernel discovered in the middle of Yalu Tsanypu river basin in Tibet. Southwest China J Agric Sci 13(1):38-41
10. Harlan JR (1992) Crops and man, 2nd edn. CSSA and ASA, Madison, WI
11. Harlan JR, Zohary D (1966) Distribution of wild wheats and barley. Science 153:1074-1080
12. Kaneko T, Kihara M, Ito K (2000) Genetic analysis of β-amylase thermostability to develop DNA marker for malt fermentability improvement in barley (Hordeum vulgare L.). Plant Breed 119:197-201
13. Kaneko T, Zhang WS, Ito K, Takeda K (2001a) Worldwide distribution of β-amylase thermostability in barley. Euphytica 121:223-228
14. Kaneko T, Zhang WS, Takahashi H, Ito K, Takeda K (2001b) QTL mapping for enzyme activity and thermostability of β-amylase in barley (Hordeum vulgare L.). Breed Sci 51:99-105
15. Kaneko T, Zhang WS, Ishii M, Ito K, Takeda K (2002) Differentiation and geographical distribution of β-amylase isozyme in barley. Genet Resour Crop Evol 49:599-605
16. Kihara M, Kaneko T, Ito K (1998) Genetic variation of β-amylase thermostability among varieties of barley (Hordeum vulgare L.) and relation to malting quality. Plant Breed 117:425-428
17. Kihara M, Kaneko T, Ito K, Aida Y, Takeda K (1999) Geographical variation of β-amylase thermostability among varieties of barley (Hordeum vulgare L.) and β-amylase deficiency in barley. Plant Breed 118:453-455
18. Kreis M, Williamson M, Shewry P R, Sharp P, Gale M (1988) Identification of a second locus encoding β-amylase on chromosome 2 of barley. Genet Res Camb 51:13-16
19. Li CD, Langridge P, Zhang X, Eckstein PE, Rossnagel BG, Lance RCM, Lefol EB, Lu MY, Harvey BL, Scoles GJ (2002) Mapping of barley (Hordeum vulgare L.) beta-amylase alleles in which an amino acid substitution determines beta-amylase isoenzyme type and the level of free beta-amylase. J Cereal Sci 35:39-50
20. Ma DQ (2000) Genetic resources of Tibetan barley in China (in Chinese). China Agriculture Press, Beijing, pp 216-254
21. Ma YF, Evans DE, Logue SJ, Langridge P (2001) Mutations of barley β-amylase that improve substrate-binding affinity and thermostability. Mol Genet Genomics 266:345-352
22. Ma YF, Langridge P, Logue SJ, Evans DE (2002) A single amino acid substitution that determines IEF band pattern of barley Beta-amylase. J Cereal Sci 35:79-84
23. Malysheva L, Röder MS (2006) Haplotype diversity in the endosperm specific β-amylase gene Bmy1 of cultivated barley (Hordeum vulgare L.). Mol Breed 18:143-156
24. Malysheva L, Ganal MW, Röder MS (2004) Evaluation of cultivated barley (Hordeum vulgare L.) germplasm for the presence of thermostable alleles of β-amylase. Plant Breed 123:128-131
25. Molina-Cano JL, Moralejo M, Igartua E, Romagosa I (1999) Further evidence supporting Morocco as a center of origin of barley. Theor Appl Genet 98:913-918
26. Molina-Cano JL, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W (2005) Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theor Appl Genet 110:613-619
27. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
28. Netsvetaev VP (1992) Position of the β-amylase locus, Bmy1, on barley chromosome 4 in relation to four genes. Barley Genet Newsl 21:67-69
29. Nielsen G, Johansen H, Jensen J (1983) Localization on chromosome 4 of genes coding for β-amylase (Bmy1) and protein Z (Paz 1). Barley Genet Newsl 13:55-56
30. Paris M, Jones MGK, Eglinton JK (2002) Genotyping single nucleotide polymorphisms for selection of barley b-amylase alleles. Plant Mol Biol Rep 20:149-159
31. Sjakste T, Röder M (2004) Distribution and inheritance of β-amylase alleles in north European barley varieties. Hereditas 141:39-45
32. Sjakste T, Zhuk A (2006) Novel haplotype description and structural background of the eventual functional significance of the barley β-amylase gene intron III rearrangements. Theor Appl Genet 113:1063-1079
33. Takahashi R (1955) The origin and evolution of cultivated barley. Adv Genet 7:227-266
34. Takahashi R (1987) Genetic features of East Asian barleys. Barley Genet V:7-20
35. Takeda K, Kihara K, Kaneko T, Ito K, Aida Y (1998) Studies on breeding of β-amylase activity in barley. 4. Characteristics and origin of β-amylase-less variant. Jpn J Breed 48(Suppl 1):130
36. Taketa S, Kikuchi S, Awayama T, Yamamoto S, Ichii M, Kawasaki S (2004) Monophyletic origin of naked barley inferred from molecular analyses of a marker closely linked to the naked caryopsis gene (nud). Theor Appl Genet 108:1236-1242
37. Xu TW (1982) Origin and evolution of cultivated barley in China (in Chinese with English abstract). Acta Genet Sin 9:440-446
38. Yin YQ, Ma DQ, Ding Y (2003) Analysis of genetic diversity of hordein in wild close relatives of barley from Tibet. Theor Appl Genet 107:837-842
39. Yoshigi N, Okada Y, Maeba H, Sahara H, Tamaki T (1995) Construction of a plasmid used for the expression of a seven-fold-mutant barley β-amylase with increased thermostability in Escherichia coli and properties of the sevenfold-mutant β-amylase. J Biochem 118:562-567
40. Zhang Q, Dai XK (1991) Patterns of diversity and geographical differentiation of isozymes in cultivated barley of Tibet. In: Munck L (ed) Barley genetics.VI: Proceedings of International Barley Genetic Symposium, Helsinborg, Sweden, pp 25-28
41. Zhang Q, Saghai Maroof MA, Yang GP (1992) Ribosomal DNA polymorphisms and the Oriental-Occidental genetic differentiation in cultivated barley. Theor Appl Genet 84:682-687
42. Zhang Q, Yang GP, Dai X, Sun JZ (1994) A comparative analysis of genetic polymorphism in wild and cultivated barley from Tibet using isozyme and ribosomal DNA markers. Genome 37:631-638
43. Zhang WS, Kaneko T, Ishii M, Takeda K (2004a) Differentiation of β-amylase phenotypes in cultivated barley. Crop Sci 44:1608-1614
44. Zhang WS, Kaneko T, Takeda K (2004b) β-amylase variation in wild barley accessions. Breed Sci 54:41-49