Prospects for molecular breeding of barley

Annals of Applied Biology

Volumn 142, Issue 1, 2003, Pages 1-12

  Thomas, W T B ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Barley; Breeding; Genomic; Marker; Molecular; Polygenic; QTL

Indexed keywords

BARLEY; CROP IMPROVEMENT; GENETICS; MOLECULAR ANALYSIS; PLANT BREEDING;

BARLEY YELLOW MOSAIC VIRUS; HORDEUM VULGARE SUBSP. VULGARE;

EID: 0038348850     PISSN: 00034746     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2003.tb00223.x     Document Type: Review

References (54)

1. Backes G, Graner A, Foroughi-Wehr B, Fischbeck G, Wenzel G, Jahoor A. 1995. Localization of Quantitative Trait Loci (QTL) for agronomic important characters by the use of a RFLP map in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 90:294-302.
2. Barua U M, Chalmers K J, Hackett C A, Thomas W T B, Powell W, Waugh R. 1993. Identification of RAPD markers linked to a Rhynchosporium secalis resistance locus in barley using near-isogenic lines and bulked segregant analysis. Heredity 71:177-184.
3. Beavis W D. 1998. QTL analyses: Power, precision, and accuracy. In Molecular Dissection of Complex Traits, pp. 145-161, Ed A H Paterson. Boca Raton, Florida: CRC Press.
4. Bezant J, Laurie D, Pratchett N, Chojecki J, Kearsey M. 1997a. Mapping QTL controlling yield and yield components in a spring barley (Hordeum vulgare L.) cross using marker regression. Molecular Breeding 3:29-38.
5. Bezant J H, Laurie D A, Pratchett N, Chojecki J, Kearsey M J. 1997b. Mapping of QTL controlling NIR predicted hot water extract and grain nitrogen content in a spring barley cross using marker- regression. Plant Breeding 116:141-145.
6. Cook R, McCaig N, McMillan J M B, Lumsden W B. 1990. Ethyl carbamate formation in grain-based spirits, part III. The primary source. Journal of the Institute of Brewing 96:233-244.
7. Costa J M, Corey A, Hayes P M, Jobet C, Kleinhofs A, Kopisch-Obusch A, Kramer S F, Kudrna D, Li M, Riera-Lizarazu O, Sato K, Szucs P, Toojinda T, Vales M I, Wolfe R I. 2001. Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population. Theoretical and Applied Genetics 103:415-424.
8. Graner A, Streng S, Kellermann A, Schiemann A, Bauer E, Waugh R, Pellio B, Ordon F. 1999. Molecular mapping and genetic fine-structure of the rym5 locus encoding resistance to different strains of the Barley Yellow Mosaic Virus Complex. Theoretical and Applied Genetics 98:285-290.
9. Hackett C A, Meyer R C, Thomas W T B. 2001. Multi-trait QTL mapping in barley using multivariate regression. Genetical Research 77:95-106.
10. Han F, Romagosa I, Ullrich S E, Jones B L, Hayes P M, Wesenberg D M. 1997. Molecular marker-assisted selection for malting quality traits in barley. Molecular Breeding 3:427-437.
11. Hayes P, Prehn D, Vivar H, Blake T, Comeau A, Henry I, Johnston M, Jones B, Steffenson B, St. Pierre C A, Chen F. 1996. Multiple disease resistance loci and their relationship to agronomic and quality loci in a spring barley population. Journal of Agricultural Genomics 2: http://www.ncgr.org/jag/papers96/paper296/indexp296.html.
12. Hayes P M, Liu B H, Knapp S J, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich S E, Wesenberg D, Kleinhofs A. 1993. Quantitative trait locus effects and environmental interaction in a sample of North-American barley germ plasm. Theoretical and Applied Genetics 87:392-401.
13. Jansen R C. 1993. Interval mapping of multiple quantitative trait loci. Genetics 135:205-211.
14. Jarman R I, Pickett A A. 1992. Botanical Descriptions of Cereal Varieties - Annual Supplement 1998, Annex 3. Cambridge: National Institute of Agricultural Botany.
15. Kandemir N, Jones B L, Wesenberg D M, Ullrich S E, Kleinhofs A. 2000. Marker-assisted analysis of three grain yield QTL in barley (Hordeum vulgare L.) using near isogenic lines. Molecular Breeding 6:157-167.
16. Kearsey M J, Farquhar A G L. 1998. QTL analysis in plants; where are we now? Heredity 80:137-142.
17. Kjaer B, Jensen J. 1996. Quantitative trait loci for grain yield and yield components in a cross between a six-rowed and a two-rowed barley. Euphytica 90:39-48.
18. Knapp S J. 1998. Marker-assisted selection as a strategy for increasing the probability of selecting superior genotypes. Crop Science 38:1164-1174.
19. Kota R, Varshney R K, Thiel T, Dehmer K J, Graner A. 2001. Generation and comparison of EST-derived SSRs and SNPs in barley (Hordeum vulgare L.). Hereditas 135:145-151.
20. Kunzel G, Korzun L, Meister A. 2000. Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154:397-412.
21. Law C N, Snape J W, Worland A J. 1987. Aneuploidy in wheat and its uses in genetic analysis. In Wheat Breeding, pp. 71-107. Ed. F G H Lupton. London: Chapman & Hall.
22. Marquez-Cedillo L A, Hayes P M, Kleinhofs A, Legge W G, Rossnagel B G, Sato K, Ullrich S E, Wesenberg D M. 2001. QTL analysis of agronomic traits in barley based on the doubled haploid progeny of two elite North American varieties representing different germplasm groups. Theoretical and Applied Genetics 103:625-637.
23. Marquez-Cedillo L A, Hayes P M, Jones B L, Kleinhofs A, Legge W G, Rossnagel B G, Sato K, Ullrich E, Wesenberg D M. 2000. QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups. Theoretical and Applied Genetics 101:173-184.
24. Mather D E, Tinker N A, LaBerge D E, Edney M, Jones B L, Rossnagel B G, Legge W G, Briggs K G, Irvine R B, Falk D E, Kasha K J. 1997. Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Science 37:544-554.
25. Melchinger A E, Utz H F, Schon C C. 1998. Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383-403.
26. Meyer R C, Swanston J S, Young G R, Lawrence P E, Bertie A, Ritchie J, Wilson A, Brosnan J, Pearson S, Bringhurst T, Steele G, Aldis P R, Field M, Jolliffe T, Powell W, Thomas W T B. 2001. A genome based approach to improving barley for the malting and distilling industries. Project Report No. 264. London, UK: HGCA.
27. Oziel A, Hayes P M, Chen F Q, Jones B. 1996. Application of quantitative trait locus mapping to the development of winter-habit malting barley. Plant Breeding 115:43-51.
28. Paterson A H, Deverna J W, Lanini B, Tanksley S D. 1990. Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124:735-742.
29. Perovic D, Smilde W D, Haluskova J, Waugh R, Sasaki T, Graner A. 2000. Update of the Igri/Franka molecular marker map. Barley Genetics Newsletter 30:15-19.
30. Powell W, Russell J R. 2000. Molecular Analysis of Barley Diversity. In Barley Genetics VIII, Proceedings of the 8th International Barley Genetics Symposium Vol. I, Adelaide, Australia, 22-27 October 2000, pp. 29-31.
31. Powell W, Thomas W T B, Baird E, Lawrence P, Booth A, Harrower B, McNicol J W, Waugh R. 1997. Analysis of quantitative traits in barley by the use of amplified fragment length polymorphisms. Heredity 79:48-59.
32. Rae A M, Howell E C, Kearsey M J. 1999. More QTL for flowering time revealed by substitution lines in Brassica oleracea. Heredity 83:586-596.
33. Ramsay L, Macaulay M, Ivanissevich S D, MacLean K, Cardle L, Fuller J, Edwards K J, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R. 2000. A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005.
34. Rasmusson D C, Phillips R L. 1997. Plant breeding progress and genetic diversity from de novo variation and elevated epistasis. Crop Science 37:303-310.
35. Remington D L, Thornsberry J M, Matsuoka Y, Wilson L M, Whitt S R, Doeblay J, Kresovich S, Goodman M M, Buckler E S. 2001. Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proceedings of the National Academy of Sciences of the United States of America 98:11479-11484.
36. Romagosa I, Han F, Ullrich S E, Hayes P M, Wesenberg D M. 1999. Verification of yield QTL through realized molecular marker-assisted selection responses in a barley cross. Molecular Breeding 5:143-152.
37. Russell J R, Ellis R P, Thomas W T B, Waugh R, Provan J, Booth A, Fuller J, Lawrence P, Young G, Powell W. 2000. A retrospective analysis of spring barley germplasm development from 'foundation genotypes' to currently successful cultivars. Molecular Breeding 6:553-568.
38. Shewry P R, Darlington H. 2002. The proteins of the mature barley grain and their role in determining malting performance. In Barley Science. Recent Advances From Molecular Biology to Agronomy of Yield and Quality, pp 503-521. Eds G A Slafer, J L Molina-Cano, R Savin, J L Araus and I Romagosa. Binghamton, NY: Food Products Press.
39. Shewry P R, Pratt H M, Faulks A J, Parmar S, Miflin B J. 1979. The storage protein (hordein) polypeptide pattern of barley (Hordeum vulgare L.) in relation to varietal identification and disease resistance. Journal of the National Institute of Agricultural Botany 15:34-50.
40. Silvey V. 1986. The contribution of new varieties to cereal yields in England and Wales between 1947 and 1983. Journal of the National Institute of Agricultural Botany 17:155-168.
41. Swanston J S, Thomas W T B, Powell W, Young G R, Lawrence P E, Ramsay L, Waugh R. 1999. Using molecular markers to determine barleys most suitable for malt whisky distilling. Molecular Breeding 5:103-109.
42. Teulat B, Merah O, Souyris I, This D. 2001. QTLs for agronomic traits from a Mediterranean barley progeny grown in several environments. Theoretical and Applied Genetics 103:774-787.
43. Thomas W T B. 2002. Molecular marker-assisted versus conventional selection in barley breeding. In Barley Science. Recent Advances From Molecular Biology to Agronomy of Yield and Quality, pp. 177-204. Eds G A Slafer, J L Molina-Cano, R Savin, J L Araus and I Romagosa. Binghamton, NY: Food Products Press.
44. Thomas W T B, Newton A C, Wilson A, Booth A, Macaulay M, Keith R. 2000. Development of recombinant chromosome substitution lines - a barley resource. SCR1 Annual Report 1999/2000, pp. 99-100.
45. Thomas W T B, Baird E, Fuller J D, Lawrence P, Young G R, Russell J, Ramsay L, Waugh R, Powell W. 1998. Identification of a QTL decreasing yield in barley linked to Mlo powdery mildew resistance. Molecular Breeding 4:381-393.
46. Thornsberry J M, Goodman M M, Doebley J, Kresovich S, Nielsen D, Buckler E S. 2001. Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics 28:286-289.
47. Tinker N A, Mather D E. 1995. MQTL: software for simplified composite interval mapping of QTL in multiple environments, Journal of Agricultural Genomics 1:http://www.ncgr.org/jag/papers95/paper295/indexp295.html.
48. Tinker N A, Mather D E, Rossnagel B G, Kasha K J, Kleinhofs A, Hayes P M, Falk D E, Ferguson T, Shugar L P, Legge W G, Irvine R B, Choo T M, Briggs K G, Ullrich S E, Franckowiak J D, Blake T K, Graf R J, Dofing S M, Maroof M A S, Scoles G J, Hoffman D, Dahleen L S, Kilian A, Chen F, Biyashev R M, Kudrna D A, Steffenson B J. 1996. Regions of the genome that affect agronomic performance in two-row barley. Crop Science 36:1053-1062.
49. Toojinda T, Baird E, Booth A, Broers L, Hayes P, Powell W, Thomas W, Vivar H, Young G. 1998. Introgression of quantitative trait loci (QTLs) determining stripe rust resistance in barley: an example of marker-assisted line development. Theoretical and Applied Genetics 96:123-131.
50. Tuvesson S, von Post L, Ohlund R, Hagberg P, Graner A, Svitashev S, Schehr M, Elovsson R. 1998. Molecular breeding for the BaMMV/BaYMV resistance gene ym4 in winter barley. Plant Breeding 117:19-22.
51. Utz H F, Melchinger A E, Schon C C. 2000. Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154:1839-1849.
52. Yin X, Stare P, Dourleijn C J, Kropff M J. 1999. AFLP mapping of quantitative trait loci for yield-determining physiological characters in spring barley. Theoretical and Applied Genetics 99:244-253.
53. Zeng Z B. 1994. Precision mapping of quantitative trait loci. Genetics 136:1457-1468.
54. Zhu H, Briceno G, Dovel R, Hayes P M, Liu B H, Liu C T, Ullrich S E. 1999. Molecular breeding for grain yield in barley: an evaluation of QTL effects in a spring barley cross. Theoretical and Applied Genetics 98:772-779.