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Volumn 32, Issue 4, 2009, Pages 233-244

Diversity of aerobic and facultative alkalitolerant and halotolerant endospore formers in soil from the Alvord Basin, Oregon

Author keywords

16S rRNA; Alkalitolerant; Bacillus; Endospores; Extremophiles; Halotolerant; PCR primers

Indexed keywords

BACTERIAL DNA; BACTERIAL ENZYME; PRIMER RNA; RNA 16S;

EID: 67349135708     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.09.008     Document Type: Article
Times cited : (9)

References (27)
  • 1
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences
    • Ash C., Farrow J.A.E., Wallbanks S., and Collins M.D. Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett. Appl. Microbiol. 13 (1991) 202-206
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 3
    • 0035720329 scopus 로고    scopus 로고
    • Identification of thermophilic and marine bacilli from shallow thermal vents by restriction analysis of their amplified 16S rDNA
    • Caccamo D., Maugeri T.L., and Gugliandolo C. Identification of thermophilic and marine bacilli from shallow thermal vents by restriction analysis of their amplified 16S rDNA. J. Appl. Microbiol. 91 (2001) 520-524
    • (2001) J. Appl. Microbiol. , vol.91 , pp. 520-524
    • Caccamo, D.1    Maugeri, T.L.2    Gugliandolo, C.3
  • 5
    • 0029958366 scopus 로고    scopus 로고
    • Development and application of a primer set for specific detection of Bacillus thuringiensis and Bacillus cereus in soil using magnetic capture hybridization and PCR amplification
    • Damgaard P.H., Jacobsen C.S., and Sørensen J. Development and application of a primer set for specific detection of Bacillus thuringiensis and Bacillus cereus in soil using magnetic capture hybridization and PCR amplification. Syst. Appl. Microbiol. 19 (1996) 436-441
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 436-441
    • Damgaard, P.H.1    Jacobsen, C.S.2    Sørensen, J.3
  • 6
    • 0141643378 scopus 로고    scopus 로고
    • Multiplex PCR screening of soil isolates for novel Bacillus-related lineages
    • Felske A.D.M., Heyrman J., Balcaen A., and de Vos P P. Multiplex PCR screening of soil isolates for novel Bacillus-related lineages. J. Microbiol. Methods (2003) 447-458
    • (2003) J. Microbiol. Methods , pp. 447-458
    • Felske, A.D.M.1    Heyrman, J.2    Balcaen, A.3    de Vos P, P.4
  • 7
    • 0042709557 scopus 로고    scopus 로고
    • Predominant Bacillus spp. in agricultural soil under different management regimes detected via PCR-DGGE
    • Garbeva P., van Veen J.A., and van Elsas J.D. Predominant Bacillus spp. in agricultural soil under different management regimes detected via PCR-DGGE. Microb. Ecol. 45 (2003) 302-316
    • (2003) Microb. Ecol. , vol.45 , pp. 302-316
    • Garbeva, P.1    van Veen, J.A.2    van Elsas, J.D.3
  • 8
    • 0034075457 scopus 로고    scopus 로고
    • Application of the partial 16S rDNA sequences as an index for rapid identification of species in the genus Bacillus
    • Goto K., Omura T., Hara Y., and Sadaie Y. Application of the partial 16S rDNA sequences as an index for rapid identification of species in the genus Bacillus. J. Gen. Appl. Microbiol. 46 (2000) 1-8
    • (2000) J. Gen. Appl. Microbiol. , vol.46 , pp. 1-8
    • Goto, K.1    Omura, T.2    Hara, Y.3    Sadaie, Y.4
  • 9
    • 0019515852 scopus 로고
    • Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria
    • Halebian S., Harris B., Fiengold S., and Rolfe R. Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria. J. Clin. Microbiol. 13 (1981) 444-448
    • (1981) J. Clin. Microbiol. , vol.13 , pp. 444-448
    • Halebian, S.1    Harris, B.2    Fiengold, S.3    Rolfe, R.4
  • 10
    • 0027973046 scopus 로고
    • Thermotolerant varieties of Bacillus licheniformis isolated from desert environments
    • Horani H.K., and Priest F.G. Thermotolerant varieties of Bacillus licheniformis isolated from desert environments. J. Appl. Bacteriol. 77 (1994) 392-400
    • (1994) J. Appl. Bacteriol. , vol.77 , pp. 392-400
    • Horani, H.K.1    Priest, F.G.2
  • 11
    • 5044240973 scopus 로고    scopus 로고
    • A program to detect chimeric sequences in multiple sequence alignments
    • Huber T., Faulkner G., and Hugenholtz Bellerophon P. A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20 (2004) 2317-2319
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz Bellerophon, P.3
  • 12
    • 0036200305 scopus 로고    scopus 로고
    • Evaluation of ribosomal RNA gene restriction patterns for the classification of Bacillus species and related genera
    • Joung K.B., and Côté J.C. Evaluation of ribosomal RNA gene restriction patterns for the classification of Bacillus species and related genera. J. Appl. Microbiol. 92 (2002) 97-108
    • (2002) J. Appl. Microbiol. , vol.92 , pp. 97-108
    • Joung, K.B.1    Côté, J.C.2
  • 14
    • 33749802336 scopus 로고
    • Influence of pH and NaCl on growth and survival of Propionibacterium freudenreichii subsp. shermanii, Bacillus pumilus, and Saccharomyces cerevisiae in broth media
    • Marshall D.L., and Odame-Darkwah J.K. Influence of pH and NaCl on growth and survival of Propionibacterium freudenreichii subsp. shermanii, Bacillus pumilus, and Saccharomyces cerevisiae in broth media. Food Sci. Technol. 28 (1995) 222-226
    • (1995) Food Sci. Technol. , vol.28 , pp. 222-226
    • Marshall, D.L.1    Odame-Darkwah, J.K.2
  • 15
    • 0025345374 scopus 로고
    • Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone and catalase
    • Nimura Y., Koh E., Fujitoshi F., Suzuki K.I., Komagata K., and Kozaki M. Amphibacillus xylanus gen. nov., sp. nov., a facultatively anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone and catalase. Int. J. Syst. Bacteriol. 40 (1990) 297-301
    • (1990) Int. J. Syst. Bacteriol. , vol.40 , pp. 297-301
    • Nimura, Y.1    Koh, E.2    Fujitoshi, F.3    Suzuki, K.I.4    Komagata, K.5    Kozaki, M.6
  • 16
    • 27844577679 scopus 로고    scopus 로고
    • Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species
    • Nogi Y., Takami H., and Horikoshi K. Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int. J. Syst. Evol. Microbiol. 55 (2005) 2309-2315
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 2309-2315
    • Nogi, Y.1    Takami, H.2    Horikoshi, K.3
  • 17
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
    • Reysenbach A.L., Wickham G.S., and Pace N.R. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Environ. Microbiol. 60 (1994) 2113-2119
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2113-2119
    • Reysenbach, A.L.1    Wickham, G.S.2    Pace, N.R.3
  • 19
    • 0030751308 scopus 로고    scopus 로고
    • Strain characterization and classification of oxyphotobacteriain clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8
    • Rudi K., Skulberg O.M., Larsen F., and Jakobsen K.S. Strain characterization and classification of oxyphotobacteriain clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8. Appl. Environ. Microbiol. 63 (1997) 2593-2599
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2593-2599
    • Rudi, K.1    Skulberg, O.M.2    Larsen, F.3    Jakobsen, K.S.4
  • 21
    • 0001237111 scopus 로고
    • A simplified method of staining endospores
    • Schaeffer A.B., and Fulton M.D. A simplified method of staining endospores. Science 77 (1933) 194
    • (1933) Science , vol.77 , pp. 194
    • Schaeffer, A.B.1    Fulton, M.D.2
  • 22
    • 1942538348 scopus 로고    scopus 로고
    • Development of the use of Bacillus species for industrial production
    • Schallmey M., Singh A., and Ward O.P. Development of the use of Bacillus species for industrial production. Can. J. Microbiol. 50 (2004) 1-17
    • (2004) Can. J. Microbiol. , vol.50 , pp. 1-17
    • Schallmey, M.1    Singh, A.2    Ward, O.P.3
  • 23
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki M.T., and Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62 (1996) 625-630
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 24
    • 0034852953 scopus 로고    scopus 로고
    • A PCR test to identify Bacillus subtilis and closely related species and its application to the monitoring of wastewater biotreatment
    • Wattiau P., Renard M.E., Ledent P., Debois V., Blackman G., and Agathos S.N. A PCR test to identify Bacillus subtilis and closely related species and its application to the monitoring of wastewater biotreatment. Appl. Microbiol. Biotechnol. 56 (2001) 816-819
    • (2001) Appl. Microbiol. Biotechnol. , vol.56 , pp. 816-819
    • Wattiau, P.1    Renard, M.E.2    Ledent, P.3    Debois, V.4    Blackman, G.5    Agathos, S.N.6
  • 25
    • 0038518210 scopus 로고    scopus 로고
    • Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3′ end 16S rDNA and 5′ end 16S-23S ITX nucleotide sequences
    • Xu D., and Côté J.C. Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3′ end 16S rDNA and 5′ end 16S-23S ITX nucleotide sequences. Int. J. Syst. Evol. Microbiol. 53 (2003) 695-704
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 695-704
    • Xu, D.1    Côté, J.C.2
  • 26


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.