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Volumn 46, Issue 1, 2000, Pages 1-8

Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus

Author keywords

16S rRNA gene; Bacillaceae; Genus Bacillus; Grouping; Identification

Indexed keywords

RIBOSOME DNA;

EID: 0034075457     PISSN: 00221260     EISSN: None     Source Type: Journal    
DOI: 10.2323/jgam.46.1     Document Type: Article
Times cited : (182)

References (23)
  • 1
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequence
    • Ash, C., Farrow, J. A. E., Wallbanks, S., and Collins, M. D. (1991) Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequence. Lett. Appl. Microbiol., 13, 202-206.
    • (1991) Lett. Appl. Microbiol. , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 2
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test
    • Ash, C., Priest, F. G., and Collins, M. D. (1993) Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test. Antonie Leeuwenhoek, 64, 253-260.
    • (1993) Antonie Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 3
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 4
    • 0031027129 scopus 로고    scopus 로고
    • Discrimination between Bacillus cereus and Bacillus thuringiensis using specific DNA probes based on variable regions of 16S rRNA
    • Giffel, M. C., Beumer, R. R., Klijn, N., Wagendrop, A., and Rombouts, F. M. (1997) Discrimination between Bacillus cereus and Bacillus thuringiensis using specific DNA probes based on variable regions of 16S rRNA. FEMS Microbiol. Lett., 146, 47-51.
    • (1997) FEMS Microbiol. Lett. , vol.146 , pp. 47-51
    • Giffel, M.C.1    Beumer, R.R.2    Klijn, N.3    Wagendrop, A.4    Rombouts, F.M.5
  • 5
    • 0031893769 scopus 로고    scopus 로고
    • Virgibacillus: A new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus
    • Heyndrickx, M., Lebbe, L., Kersters, K., De Vos, P., Forsyth, G., and Logan, N.A. (1998) Virgibacillus: A new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int. J. Syst. Bacteriol., 48, 99-106.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 99-106
    • Heyndrickx, M.1    Lebbe, L.2    Kersters, K.3    De Vos, P.4    Forsyth, G.5    Logan, N.A.6
  • 6
    • 0029066388 scopus 로고
    • Differentiation of Bacillus anthracis and other 'Bacillus cereus group' bacteria using IS231-derived sequences
    • Ian, H., Yu, D., and Peter, C. B. T. (1995) Differentiation of Bacillus anthracis and other 'Bacillus cereus group' bacteria using IS231-derived sequences. FEMS Microbiol. Lett., 128, 113-118.
    • (1995) FEMS Microbiol. Lett. , vol.128 , pp. 113-118
    • Ian, H.1    Yu, D.2    Peter, C.B.T.3
  • 7
    • 0030785668 scopus 로고    scopus 로고
    • Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces
    • Kataoka, M., Ueda, K., Kudo, T., Seki, T., and Yoshida, T. (1997) Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces. FEMS Microbiol. Lett., 151, 249-255.
    • (1997) FEMS Microbiol. Lett. , vol.151 , pp. 249-255
    • Kataoka, M.1    Ueda, K.2    Kudo, T.3    Seki, T.4    Yoshida, T.5
  • 8
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences
    • Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 9
    • 0024372883 scopus 로고
    • Taxonomic relationship of black-pigmented Bacillus subtilis strains and a proposal for Bacillus atrophaeus sp. nov.
    • Nakamura, L. K. (1989) Taxonomic relationship of black-pigmented Bacillus subtilis strains and a proposal for Bacillus atrophaeus sp. nov. Int. J. Syst. Bacteriol., 39, 295-300.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 295-300
    • Nakamura, L.K.1
  • 10
    • 0029095996 scopus 로고
    • Phenetic diversity of alkaliphilic Bacillus strains: Proposal for nine new species
    • Nielsen, P., Fritze, D., and Priest, F. G. (1995) Phenetic diversity of alkaliphilic Bacillus strains: Proposal for nine new species. Microbiology, 141, 1745-1761.
    • (1995) Microbiology , vol.141 , pp. 1745-1761
    • Nielsen, P.1    Fritze, D.2    Priest, F.G.3
  • 11
    • 0018892820 scopus 로고
    • Characterization of Bacillus subtilis, Bacillus pumilus, Bacillus licheniformis, and Bacillus amyloliquefaciens by pyrolysis gas-liquid chromatography, deoxyribonucleic acid-deoxyribonucleic acid hybridization, biochemical tests, and API system
    • O'Donnell, A. G., Norris, J. R. W., Claus, D., Kaneko, T., Logan, N. A., and Nozaki, R. (1980) Characterization of Bacillus subtilis, Bacillus pumilus, Bacillus licheniformis, and Bacillus amyloliquefaciens by pyrolysis gas-liquid chromatography, deoxyribonucleic acid-deoxyribonucleic acid hybridization, biochemical tests, and API system. Int. J. Syst. Bacteriol., 30, 448-459.
    • (1980) Int. J. Syst. Bacteriol. , vol.30 , pp. 448-459
    • O'Donnell, A.G.1    Norris, J.R.W.2    Claus, D.3    Kaneko, T.4    Logan, N.A.5    Nozaki, R.6
  • 12
    • 0028215622 scopus 로고
    • Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition
    • Robert, M. S., Nakamura, L. K., and Cohan, F. M. (1994) Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition. Int. J. Syst. Bacteriol., 44, 256-264.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 256-264
    • Robert, M.S.1    Nakamura, L.K.2    Cohan, F.M.3
  • 13
    • 0030747235 scopus 로고    scopus 로고
    • Nucleotide sequence and analysis of the phoB-rrnE-groESL region of the Bacillus subtilis chromosome
    • Sadaie, Y., Yata, K., Fujita, M., Sagai, H., Itaya, M., Kasahara, Y., and Ogasawara, N. (1997) Nucleotide sequence and analysis of the phoB-rrnE-groESL region of the Bacillus subtilis chromosome. Microbiology, 143, 1861-1866.
    • (1997) Microbiology , vol.143 , pp. 1861-1866
    • Sadaie, Y.1    Yata, K.2    Fujita, M.3    Sagai, H.4    Itaya, M.5    Kasahara, Y.6    Ogasawara, N.7
  • 14
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstruction phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstruction phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 15
    • 0018189658 scopus 로고
    • Deoxyribonucleic acid homology and taxonomy of the genus Bacillus
    • Seki, T., Chung, C., Mikami, H., and Oshima, Y. (1978) Deoxyribonucleic acid homology and taxonomy of the genus Bacillus. Int. J. Syst. Bacteriol., 28, 182-189.
    • (1978) Int. J. Syst. Bacteriol. , vol.28 , pp. 182-189
    • Seki, T.1    Chung, C.2    Mikami, H.3    Oshima, Y.4
  • 16
    • 0029836888 scopus 로고    scopus 로고
    • Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov.
    • Shida, O., Takagi, H., Kadowaki, K., and Komagata, K. (1996) Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int. J. Syst. Bacteriol., 46, 939-946.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 939-946
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Komagata, K.4
  • 17
    • 0028816375 scopus 로고
    • Proposal of Bacillus reuszeri sp. nov., Bacillus formosus sp. nov., nom. rev., and Bacillus borstelensis sp. nov., nom. rev.
    • Shida, O., Takagi, H., Kadowaki, K., Udaka, S., Nakamura, L. K., and Komagata, K. (1995) Proposal of Bacillus reuszeri sp. nov., Bacillus formosus sp. nov., nom. rev., and Bacillus borstelensis sp. nov., nom. rev. Int. J. Syst. Bacteriol., 45, 93-100.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 93-100
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Udaka, S.4    Nakamura, L.K.5    Komagata, K.6
  • 18
    • 0001420680 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence weighing, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 76, 4350-4354.
    • (1994) Nucleic Acids Res. , vol.76 , pp. 4350-4354
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 19
    • 0028207257 scopus 로고
    • Identification of capsule-forming Bacillus anthracis spores with the PCR and a novel dual-probe hybridization format
    • Timothy, C. R., Malcolm, J., Suresh, D. P., and Mitchell, C. (1994) Identification of capsule-forming Bacillus anthracis spores with the PCR and a novel dual-probe hybridization format. Appl. Environ. Microbiol., 60, 1622-1625.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1622-1625
    • Timothy, C.R.1    Malcolm, J.2    Suresh, D.P.3    Mitchell, C.4
  • 20
    • 0033113603 scopus 로고    scopus 로고
    • Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb, nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov.
    • Waino, M., Tindall, B. J., Schumann, P., and Ingvorsen, K. (1999) Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb, nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int. J. Syst. Bacteriol., 49, 821-831.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 821-831
    • Waino, M.1    Tindall, B.J.2    Schumann, P.3    Ingvorsen, K.4
  • 21
    • 0026608760 scopus 로고
    • Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of new genus, Alicyclobacillus gen. nov.
    • Wisotzkey, J. D., Jurtshuk, P., Jr., Fox, G. E., Deinhard, G., and Poralla, K. (1992) Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of new genus, Alicyclobacillus gen. nov. Int. J. Syst. Bacteriol., 42, 263-269.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 263-269
    • Wisotzkey, J.D.1    Jurtshuk P., Jr.2    Fox, G.E.3    Deinhard, G.4    Poralla, K.5
  • 22
    • 0031202058 scopus 로고    scopus 로고
    • The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: The elevation of the subgenus Gluconoacetobacter to the genetic level
    • Yamada, Y., Hoshino, K., and Ishikawa, T. (1997) The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: The elevation of the subgenus Gluconoacetobacter to the genetic level. Biosci. Biotech. Biochem., 61, 1244-1251.
    • (1997) Biosci. Biotech. Biochem. , vol.61 , pp. 1244-1251
    • Yamada, Y.1    Hoshino, K.2    Ishikawa, T.3
  • 23
    • 0030864365 scopus 로고    scopus 로고
    • Randomly amplified polymorphic DNA (RAPD) for rapid identification of spoilage bacterium Alicyclobacillus acidoterrestris
    • Yamazaki, K., Okubo, T., Inoue, N., and Shinano, H. (1997) Randomly Amplified Polymorphic DNA (RAPD) for rapid identification of spoilage bacterium Alicyclobacillus acidoterrestris. Biosci. Biotech. Biochem., 61, 1016-1018.
    • (1997) Biosci. Biotech. Biochem. , vol.61 , pp. 1016-1018
    • Yamazaki, K.1    Okubo, T.2    Inoue, N.3    Shinano, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.