-
1
-
-
33748798478
-
Graph-based methods for analysing networks in cell biology
-
Aittokallio T., and Schwikowski B. Graph-based methods for analysing networks in cell biology. Briefings in Bioinformatics 7 (2006) 243-255
-
(2006)
Briefings in Bioinformatics
, vol.7
, pp. 243-255
-
-
Aittokallio, T.1
Schwikowski, B.2
-
2
-
-
0037881782
-
Metabolic reconstruction using shortest paths
-
Arita M. Metabolic reconstruction using shortest paths. Simulation Practice and Theory 8 (2000) 109-125
-
(2000)
Simulation Practice and Theory
, vol.8
, pp. 109-125
-
-
Arita, M.1
-
3
-
-
33845877959
-
Recovering metabolic pathways via optimisation
-
Beasley J.E., and Planes F.J. Recovering metabolic pathways via optimisation. Bioinformatics 23 (2007) 92-98
-
(2007)
Bioinformatics
, vol.23
, pp. 92-98
-
-
Beasley, J.E.1
Planes, F.J.2
-
8
-
-
17444382016
-
Exploring the diversity of complex metabolic networks
-
Hatzimanikatis V., Li C., Ionita J.A., Henry C.S., Jankowski M.D., and Broadbelt L.J. Exploring the diversity of complex metabolic networks. Bioinformatics 21 (2005) 1603-1609
-
(2005)
Bioinformatics
, vol.21
, pp. 1603-1609
-
-
Hatzimanikatis, V.1
Li, C.2
Ionita, J.A.3
Henry, C.S.4
Jankowski, M.D.5
Broadbelt, L.J.6
-
9
-
-
67349222737
-
-
ILOG CPLEX, 2005. http://www.ilog.com/products/cplex/news/whatsnew.cfm#cplex90
-
(2005)
-
-
-
10
-
-
13444262374
-
EcoCyc: A comprehensive database resource for Escherichia coli
-
Keseler I.M., Collado-Vides J., Gama-Castro S., Ingraham J., Paley S., Paulsen I.T., Peralta-Gill M., and Karp P.D. EcoCyc: A comprehensive database resource for Escherichia coli. Nucleic Acids Research 33 (2005) D334-D337
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.T.6
Peralta-Gill, M.7
Karp, P.D.8
-
11
-
-
0037308505
-
Two approaches for metabolic pathway analysis?
-
Klamt S., and Stelling J. Two approaches for metabolic pathway analysis?. Trends in Biotechnology 21 (2003) 64-69
-
(2003)
Trends in Biotechnology
, vol.21
, pp. 64-69
-
-
Klamt, S.1
Stelling, J.2
-
12
-
-
16344381707
-
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber
-
Koch I., Junker B.H., and Heiner M. Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. Bioinformatics 21 (2005) 1219-1226
-
(2005)
Bioinformatics
, vol.21
, pp. 1219-1226
-
-
Koch, I.1
Junker, B.H.2
Heiner, M.3
-
13
-
-
0033670135
-
Pathway analysis in metabolic databases via differential metabolic display (DMD)
-
Küffner R., Zimmer R., and Lengauer T. Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinformatics 16 (2000) 825-836
-
(2000)
Bioinformatics
, vol.16
, pp. 825-836
-
-
Küffner, R.1
Zimmer, R.2
Lengauer, T.3
-
15
-
-
0026898481
-
Synthesis of reaction mechanisms consisting of reversible and irreversible steps. 1. A synthesis approach in the context of simple examples
-
Mavrovouniotis M.L. Synthesis of reaction mechanisms consisting of reversible and irreversible steps. 1. A synthesis approach in the context of simple examples. Industrial and Engineering Chemistry Research 31 (1992) 1625-1637
-
(1992)
Industrial and Engineering Chemistry Research
, vol.31
, pp. 1625-1637
-
-
Mavrovouniotis, M.L.1
-
16
-
-
0026898402
-
Synthesis of reaction mechanisms consisting of reversible and irreversible steps. 2. Formalization and analysis of the synthesis algorithm
-
Mavrovouniotis M.L. Synthesis of reaction mechanisms consisting of reversible and irreversible steps. 2. Formalization and analysis of the synthesis algorithm. Industrial and Engineering Chemistry Research 31 (1992) 1637-1653
-
(1992)
Industrial and Engineering Chemistry Research
, vol.31
, pp. 1637-1653
-
-
Mavrovouniotis, M.L.1
-
17
-
-
2042440312
-
Identification of qualitatively feasible metabolic pathways
-
Hunter L. (Ed), AAAI Press/MIT Press
-
Mavrovouniotis M.L. Identification of qualitatively feasible metabolic pathways. In: Hunter L. (Ed). Artificial Intelligence and Molecular Biology (1993), AAAI Press/MIT Press 325-364
-
(1993)
Artificial Intelligence and Molecular Biology
, pp. 325-364
-
-
Mavrovouniotis, M.L.1
-
18
-
-
0141850380
-
PathMiner: Predicting metabolic pathways by heuristic search
-
McShan D.C., Rao S., and Shah I. PathMiner: Predicting metabolic pathways by heuristic search. Bioinformatics 19 (2003) 1692-1698
-
(2003)
Bioinformatics
, vol.19
, pp. 1692-1698
-
-
McShan, D.C.1
Rao, S.2
Shah, I.3
-
20
-
-
0037727678
-
Metabolic pathways in the post-genome era
-
Papin J.A., Price N.D., Wiback S.J., Fell D.A., and Palsson B.O. Metabolic pathways in the post-genome era. Trends in Biochemical Science 28 (2003) 250-258
-
(2003)
Trends in Biochemical Science
, vol.28
, pp. 250-258
-
-
Papin, J.A.1
Price, N.D.2
Wiback, S.J.3
Fell, D.A.4
Palsson, B.O.5
-
21
-
-
16344376028
-
Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC)
-
Rahman S.A., Advani P., Schunk R., Schrader R., and Schomburg D. Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). Bioinformatics 21 (2005) 1189-1193
-
(2005)
Bioinformatics
, vol.21
, pp. 1189-1193
-
-
Rahman, S.A.1
Advani, P.2
Schunk, R.3
Schrader, R.4
Schomburg, D.5
-
22
-
-
33747890136
-
Observing local and global properties of metabolic pathways: 'Load points' and 'choke points' in the metabolic networks
-
Rahman S.A., and Schomburg D. Observing local and global properties of metabolic pathways: 'Load points' and 'choke points' in the metabolic networks. Bioinformatics 22 (2006) 1767-1774
-
(2006)
Bioinformatics
, vol.22
, pp. 1767-1774
-
-
Rahman, S.A.1
Schomburg, D.2
-
23
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed J.L., Vo T.D., Schilling C.H., and Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biology 4 (2003) R54
-
(2003)
Genome Biology
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
24
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling C.H., Letscher D., and Palsson B.O. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. Journal of Theoretical Biology 203 (2000) 229-248
-
(2000)
Journal of Theoretical Biology
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
25
-
-
0033136109
-
Metabolic pathway analysis: Basic concepts and scientific applications in the post-genomic era
-
Schilling C.H., Schuster S., Palsson B.O., and Heinrich R. Metabolic pathway analysis: Basic concepts and scientific applications in the post-genomic era. Biotechnology Progress 15 (1999) 296-303
-
(1999)
Biotechnology Progress
, vol.15
, pp. 296-303
-
-
Schilling, C.H.1
Schuster, S.2
Palsson, B.O.3
Heinrich, R.4
-
26
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster S., Fell D.A., and Dandekar D. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nature Biotechnology 18 (2000) 326-332
-
(2000)
Nature Biotechnology
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, D.3
-
27
-
-
0022971582
-
MPS: An algorithm and data base for metabolic pathway synthesis
-
Seressiotis A., and Bailey J.E. MPS: An algorithm and data base for metabolic pathway synthesis. Biotechnology Letters 8 (1986) 837-842
-
(1986)
Biotechnology Letters
, vol.8
, pp. 837-842
-
-
Seressiotis, A.1
Bailey, J.E.2
-
28
-
-
0023995387
-
MPS-An artificially intelligent software system for the analysis and synthesis of metabolic pathways
-
Seressiotis A., and Bailey J.E. MPS-An artificially intelligent software system for the analysis and synthesis of metabolic pathways. Biotechnology and Bioengineering 31 (1988) 587-602
-
(1988)
Biotechnology and Bioengineering
, vol.31
, pp. 587-602
-
-
Seressiotis, A.1
Bailey, J.E.2
-
29
-
-
27544501653
-
Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in E. Coli
-
Simao E., Remy E., Thieffry D., and Chaouiya C. Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in E. Coli. Bioinformatics 21 Suppl. 2 (2005) ii190-ii196
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Simao, E.1
Remy, E.2
Thieffry, D.3
Chaouiya, C.4
-
30
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J., Klamt S., Bettenbrock K., Schuster S., and Gilles E.D. Metabolic network structure determines key aspects of functionality and regulation. Nature 420 (2002) 190-193
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
31
-
-
0345602990
-
Topological analysis of metabolic networks based on Petri net theory
-
Zevedei-Oancea I., and Schuster S. Topological analysis of metabolic networks based on Petri net theory. In Silico Biology 3 (2003) 0029. http://www.bioinfo.de/isb/2003/03/0029/main.html
-
(2003)
In Silico Biology
, vol.3
, pp. 0029
-
-
Zevedei-Oancea, I.1
Schuster, S.2
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