-
1
-
-
0004155427
-
-
4th edit. W. H. Freeman New York
-
L. Stryer Biochemistry 4th edit. 1995 W. H. Freeman New York
-
(1995)
Biochemistry
-
-
Stryer, L.1
-
2
-
-
0030340124
-
HinCyc: A knowledge base of the complete genome and metabolic pathways of H. influenzae
-
P.D. Karp, C. Ouzounis, and S. Paley HinCyc: a knowledge base of the complete genome and metabolic pathways of H. influenzae Proc. Int. Conf. Intell. Syst. Mol. Biol. 4 1996 116 124
-
(1996)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.4
, pp. 116-124
-
-
Karp, P.D.1
Ouzounis, C.2
Paley, S.3
-
3
-
-
0343488601
-
A reconstruction of the metabolism of Methanococcus jannaschii from sequence data
-
E. Selkov, N. Maltsev, G.J. Olsen, R. Overbeek, and W.B. Whitman A reconstruction of the metabolism of Methanococcus jannaschii from sequence data Gene 197 1997 GC11 GC26
-
(1997)
Gene
, vol.197
-
-
Selkov, E.1
Maltsev, N.2
Olsen, G.J.3
Overbeek, R.4
Whitman, W.B.5
-
5
-
-
0033977576
-
WIT: Integrated system for high-throughput genome sequence analysis and metabolic reconstruction
-
R. Overbeek, N. Larsen, G.D. Pusch, M. D'Souza, E. Selkov Jr, and N. Kyrpides WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction Nucl. Acids Res. 28 2000 123 125
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 123-125
-
-
Overbeek, R.1
Larsen, N.2
Pusch, G.D.3
D'Souza, M.4
Selkov Jr., E.5
Kyrpides, N.6
-
6
-
-
0033964238
-
The EcoCyc and MetaCyc databases
-
P.D. Karp, M. Riley, M. Saier, I.T. Paulsen, S.M. Paley, and A. Pellegrini-Toole The EcoCyc and MetaCyc databases Nucl. Acids Res. 28 2000 56 59
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 56-59
-
-
Karp, P.D.1
Riley, M.2
Saier, M.3
Paulsen, I.T.4
Paley, S.M.5
Pellegrini-Toole, A.6
-
8
-
-
0346494819
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
C.J. Krieger, P. Zhang, L.A. Mueller, A. Wang, S. Paley, and M. Arnaud MetaCyc: a multiorganism database of metabolic pathways and enzymes Nucl. Acids Res. 32 2004 D438 D442
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Krieger, C.J.1
Zhang, P.2
Mueller, L.A.3
Wang, A.4
Paley, S.5
Arnaud, M.6
-
10
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
H. Ogata, S. Goto, K. Sato, W. Fujibuchi, H. Bono, and M. Kanehisa KEGG: Kyoto Encyclopedia of Genes and Genomes Nucl. Acids Res. 27 1999 29 34
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
11
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, and M. Hattori The KEGG resource for deciphering the genome Nucl. Acids Res. 32 2004 D277 D280
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
12
-
-
0033786867
-
Representing and analysing molecular and cellular function using the computer
-
J. van Helden, A. Naim, R. Mancuso, M. Eldridge, L. Wernisch, D. Gilbert, and S.J. Wodak Representing and analysing molecular and cellular function using the computer Biol. Chem. 381 2000 921 935
-
(2000)
Biol. Chem.
, vol.381
, pp. 921-935
-
-
Van Helden, J.1
Naim, A.2
Mancuso, R.3
Eldridge, M.4
Wernisch, L.5
Gilbert, D.6
Wodak, S.J.7
-
13
-
-
0035291113
-
From molecular activities and processes to biological function
-
J. van Helden, A. Naim, C. Lemer, R. Mancuso, M. Eldridge, and S.J. Wodak From molecular activities and processes to biological function Brief Bioinform. 2 2001 81 93
-
(2001)
Brief Bioinform.
, vol.2
, pp. 81-93
-
-
Van Helden, J.1
Naim, A.2
Lemer, C.3
Mancuso, R.4
Eldridge, M.5
Wodak, S.J.6
-
14
-
-
0345863903
-
The aMAZE LightBench: A web interface to a relational database of cellular processes
-
C. Lemer, E. Antezana, F. Couche, F. Fays, X. Santolaria, and R. Janky The aMAZE LightBench: a web interface to a relational database of cellular processes Nucl. Acids Res. 32 2004 D443 D448
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Lemer, C.1
Antezana, E.2
Couche, F.3
Fays, F.4
Santolaria, X.5
Janky, R.6
-
15
-
-
0034609791
-
The large-scale organization of metabolic networks
-
H. Jeong, B. Tombor, R. Albert, Z.N. Oltvai, and A.L. Barabasi The large-scale organization of metabolic networks Nature 407 2000 651 654
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
16
-
-
0033764169
-
The small world of metabolism
-
D.A. Fell, and A. Wagner The small world of metabolism Nature Biotechnol. 18 2000 1121 1122
-
(2000)
Nature Biotechnol.
, vol.18
, pp. 1121-1122
-
-
Fell, D.A.1
Wagner, A.2
-
17
-
-
0035823264
-
The small world inside large metabolic networks
-
A. Wagner, and D.A. Fell The small world inside large metabolic networks Proc. Roy. Soc. ser. B 268 2001 1803 1810
-
(2001)
Proc. Roy. Soc. Ser. B
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
18
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
E. Ravasz, A.L. Somera, D.A. Mongru, Z.N. Oltvai, and A.L. Barabasi Hierarchical organization of modularity in metabolic networks Science 297 2002 1551 1555
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
19
-
-
0036303685
-
Evolution of enzymes in metabolism: A network perspective
-
R. Alves, R.A. Chaleil, and M.J. Sternberg Evolution of enzymes in metabolism: a network perspective J. Mol. Biol. 320 2002 751 770
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 751-770
-
-
Alves, R.1
Chaleil, R.A.2
Sternberg, M.J.3
-
20
-
-
0036306663
-
Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli
-
S.C. Rison, S.A. Teichmann, and J.M. Thornton Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli J. Mol. Biol. 318 2002 911 932
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 911-932
-
-
Rison, S.C.1
Teichmann, S.A.2
Thornton, J.M.3
-
21
-
-
0141684658
-
Analysis of metabolic networks using a pathway distance metric through linear programming
-
E. Simeonidis, S.C. Rison, J.M. Thornton, I.D. Bogle, and L.G. Papageorgiou Analysis of metabolic networks using a pathway distance metric through linear programming Metab. Eng. 5 2003 211 219
-
(2003)
Metab. Eng.
, vol.5
, pp. 211-219
-
-
Simeonidis, E.1
Rison, S.C.2
Thornton, J.M.3
Bogle, I.D.4
Papageorgiou, L.G.5
-
22
-
-
0242522894
-
The organization of the microbial biodegradation network from a systems-biology perspective
-
F. Pazos, A. Valencia, and V. De Lorenzo The organization of the microbial biodegradation network from a systems-biology perspective EMBO Rep. 4 2003 994 999
-
(2003)
EMBO Rep.
, vol.4
, pp. 994-999
-
-
Pazos, F.1
Valencia, A.2
De Lorenzo, V.3
-
23
-
-
0033670135
-
Pathway analysis in metabolic databases via differential metabolic display (DMD)
-
R. Kuffner, R. Zimmer, and T. Lengauer Pathway analysis in metabolic databases via differential metabolic display (DMD) Bioinformatics 16 2000 825 836
-
(2000)
Bioinformatics
, vol.16
, pp. 825-836
-
-
Kuffner, R.1
Zimmer, R.2
Lengauer, T.3
-
24
-
-
0034564487
-
Analysis of gene expression data with pathway scores
-
A. Zien, R. Kuffner, R. Zimmer, and T. Lengauer Analysis of gene expression data with pathway scores Ismb 8 2000 407 417
-
(2000)
Ismb
, vol.8
, pp. 407-417
-
-
Zien, A.1
Kuffner, R.2
Zimmer, R.3
Lengauer, T.4
-
25
-
-
75949121397
-
Applications of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data
-
J. van Helden, D. Gilbert, L. Wernisch, M. Schroeder, and S. Wodak Applications of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data Lecture Notes Comput. Sci. 2066 2001 155 172
-
(2001)
Lecture Notes Comput. Sci.
, vol.2066
, pp. 155-172
-
-
Van Helden, J.1
Gilbert, D.2
Wernisch, L.3
Schroeder, M.4
Wodak, S.5
-
26
-
-
1242319556
-
The metabolic world of Escherichia coli is not small
-
M. Arita The metabolic world of Escherichia coli is not small Proc. Natl Acad. Sci. USA 101 2004 1543 1547
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 1543-1547
-
-
Arita, M.1
-
27
-
-
2942516004
-
Ab initio reconstruction of metabolic pathways
-
F. Boyer, and A. Viari Ab initio reconstruction of metabolic pathways Bioinformatics 19 2003 II26 II34
-
(2003)
Bioinformatics
, vol.19
-
-
Boyer, F.1
Viari, A.2
-
29
-
-
4444234772
-
Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
-
H.W. Ma, X.M. Zhao, Y.J. Yuan, and A.P. Zeng Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph Bioinformatics 20 2004 1870 1876
-
(2004)
Bioinformatics
, vol.20
, pp. 1870-1876
-
-
Ma, H.W.1
Zhao, X.M.2
Yuan, Y.J.3
Zeng, A.P.4
-
31
-
-
84867949109
-
Finding paths in graphs avoiding forbidden transitions
-
S. Szeider Finding paths in graphs avoiding forbidden transitions Discrete Appl. Math. 126 2003 261 273
-
(2003)
Discrete Appl. Math.
, vol.126
, pp. 261-273
-
-
Szeider, S.1
-
32
-
-
0026353854
-
Estimation of standard Gibbs energy changes of biotransformations
-
M.L. Mavrovouniotis Estimation of standard Gibbs energy changes of biotransformations J. Biol. Chem. 266 1991 14440 14445
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 14440-14445
-
-
Mavrovouniotis, M.L.1
-
34
-
-
17444382016
-
Exploring the diversity of complex metabolic networks
-
V. Hatzimanikatis, C. Li, J.A. Ionita, C.S. Henry, M.D. Jankowski, and L.J. Broadbelt Exploring the diversity of complex metabolic networks Bioinformatics 21 2005 1603 1609
-
(2005)
Bioinformatics
, vol.21
, pp. 1603-1609
-
-
Hatzimanikatis, V.1
Li, C.2
Ionita, J.A.3
Henry, C.S.4
Jankowski, M.D.5
Broadbelt, L.J.6
-
35
-
-
0033670135
-
Pathway analysis in metabolic databases via differential metabolic display (DMD)
-
Kuffner, R., Zimmer, R., Lengauer, T. (2000). Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinformatics, 16, 825-836.
-
(2000)
Bioinformatics
, vol.16
, pp. 825-836
-
-
Kuffner, R.1
Zimmer, R.2
Lengauer, T.3
|