메뉴 건너뛰기




Volumn 51, Issue 3, 2009, Pages 515-530

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): New insights from phylogenetic analyses of low-copy nuclear genes

Author keywords

DHAR; Duplicated gene; Fragaria; GBSSI; Low copy nuclear genes; Polyploidy; Reticulate evolution

Indexed keywords

FRAGARIA; FRAGARIA CHILOENSIS; FRAGARIA MOSCHATA; FRAGARIA VIRGINIANA; FRAGARIA X ANANASSA;

EID: 67349124466     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.12.024     Document Type: Article
Times cited : (154)

References (125)
  • 1
    • 0035983463 scopus 로고    scopus 로고
    • New insights into the distribution of polyploid Daphnia: the Holarctic revisited and Argentina explored
    • Adamowicz S.J., Gregory T.R., Marinone M.C., and Hebert P.D.N. New insights into the distribution of polyploid Daphnia: the Holarctic revisited and Argentina explored. Mol. Ecol. 11 (2002) 1209-1217
    • (2002) Mol. Ecol. , vol.11 , pp. 1209-1217
    • Adamowicz, S.J.1    Gregory, T.R.2    Marinone, M.C.3    Hebert, P.D.N.4
  • 2
    • 24644457076 scopus 로고    scopus 로고
    • Novel patterns of gene expression in polyploid plants
    • Adams K.L., and Wendel J.F. Novel patterns of gene expression in polyploid plants. Trends Genet. 21 (2005) 539-543
    • (2005) Trends Genet. , vol.21 , pp. 539-543
    • Adams, K.L.1    Wendel, J.F.2
  • 3
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • Adams K.L., Cronn R., Percifield R., and Wendel J.F. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100 (2003) 4649-4654
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 4
    • 65049091436 scopus 로고    scopus 로고
    • Aïnouche, M.L., Fortune, P.M., Salmon, A., Parisod, C., Grandbastien, M.A., Fukunaga, K., Ricou, M., Misset, M.T., in press. Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). Biol. Invasions., doi:10.1007/s10530-008-9383-2.
    • Aïnouche, M.L., Fortune, P.M., Salmon, A., Parisod, C., Grandbastien, M.A., Fukunaga, K., Ricou, M., Misset, M.T., in press. Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). Biol. Invasions., doi:10.1007/s10530-008-9383-2.
  • 5
    • 33846811438 scopus 로고    scopus 로고
    • Mechanisms and rates of birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid and tetraploid wheats
    • Akhunov E.D., Akhunova A.R., and Dvorak J. Mechanisms and rates of birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid and tetraploid wheats. Mol. Biol. Evol. 24 (2007) 539-550
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 539-550
    • Akhunov, E.D.1    Akhunova, A.R.2    Dvorak, J.3
  • 6
    • 33745335890 scopus 로고    scopus 로고
    • Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids
    • Albertin W., Balliau T., Brabant P., Chevre A.-M., Eber F., Malosse C., and Thiellement H. Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids. Genetics 173 (2006) 1101-1113
    • (2006) Genetics , vol.173 , pp. 1101-1113
    • Albertin, W.1    Balliau, T.2    Brabant, P.3    Chevre, A.-M.4    Eber, F.5    Malosse, C.6    Thiellement, H.7
  • 7
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Álvarez I., and Wendel J.F. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29 (2003) 417-434
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 417-434
    • Álvarez, I.1    Wendel, J.F.2
  • 8
    • 0028017447 scopus 로고
    • Phylogénies moléculaires et insertions-délétions de nucléotides. Comptes Rendus de l'Académie des Sciences, Paris.
    • Barriel, V., 1994. Phylogénies moléculaires et insertions-délétions de nucléotides. Comptes Rendus de l'Académie des Sciences, Paris. Sciences de la Vie 317, 693-701.
    • (1994) Sciences de la Vie , vol.317 , pp. 693-701
    • Barriel, V.1
  • 9
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc G., and Wolfe K.H. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16 (2004) 1667-1678
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 10
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc G., Hokamp K., and Wolfe K.H. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13 (2003) 137-144
    • (2003) Genome Res. , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 11
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers J.E., Chapman B.A., Rong J., and Paterson A.H. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422 (2003) 433-438
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 14
    • 33645389485 scopus 로고    scopus 로고
    • Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
    • Chen Z.J., and Ni Z. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. BioEssays 28 (2006) 240-252
    • (2006) BioEssays , vol.28 , pp. 240-252
    • Chen, Z.J.1    Ni, Z.2
  • 15
  • 16
    • 33644681986 scopus 로고    scopus 로고
    • The advantages and disadvantages of being polyploid
    • Comai L. The advantages and disadvantages of being polyploid. Nat. Rev. Genet. 6 (2005) 836-846
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 836-846
    • Comai, L.1
  • 18
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res. 16 (1988) 10881-10890
    • (1988) Nucl. Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 19
    • 48249123402 scopus 로고    scopus 로고
    • Choosing and using introns in molecular phylogenetics
    • Creer S. Choosing and using introns in molecular phylogenetics. Evol. Bioinform. 3 (2007) 99-108
    • (2007) Evol. Bioinform. , vol.3 , pp. 99-108
    • Creer, S.1
  • 20
    • 0032465507 scopus 로고    scopus 로고
    • Simple methods for isolating homeologous loci from allopolyploid genomes
    • Cronn R., and Wendel J.F. Simple methods for isolating homeologous loci from allopolyploid genomes. Genome 41 (1998) 756-762
    • (1998) Genome , vol.41 , pp. 756-762
    • Cronn, R.1    Wendel, J.F.2
  • 21
    • 0033452727 scopus 로고    scopus 로고
    • Duplicated genes evolve independently after polyploid formation in cotton
    • Cronn R.C., Small R.L., and Wendel J.F. Duplicated genes evolve independently after polyploid formation in cotton. Proc. Natl. Acad. Sci. USA 96 (1999) 14406-14411
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14406-14411
    • Cronn, R.C.1    Small, R.L.2    Wendel, J.F.3
  • 23
    • 31544459782 scopus 로고    scopus 로고
    • Estimation of preferential pairing rates in second-generation autotetraploid pacific oysters (Crassostrea gigas)
    • Curole J.P., and Hedgecock D. Estimation of preferential pairing rates in second-generation autotetraploid pacific oysters (Crassostrea gigas). Genetics 171 (2005) 855-859
    • (2005) Genetics , vol.171 , pp. 855-859
    • Curole, J.P.1    Hedgecock, D.2
  • 24
    • 34547822048 scopus 로고    scopus 로고
    • Polyploidy, reproductive biology, and Rosaceae: understanding evolution and making classifications
    • Dickinson T.A., Lo E., and Talent N. Polyploidy, reproductive biology, and Rosaceae: understanding evolution and making classifications. Plant Syst. Evol. 266 (2007) 59-78
    • (2007) Plant Syst. Evol. , vol.266 , pp. 59-78
    • Dickinson, T.A.1    Lo, E.2    Talent, N.3
  • 25
    • 0037163126 scopus 로고    scopus 로고
    • Functional Divergence in the Glutathione Transferase Superfamily in Plants. Identification of two classes with putative functions in redox homeostasis in Arabidopsis thaliana
    • Dixon D.P., Davis B.G., and Edwards R. Functional Divergence in the Glutathione Transferase Superfamily in Plants. Identification of two classes with putative functions in redox homeostasis in Arabidopsis thaliana. J. Biol. Chem. 277 (2002) 30859-30869
    • (2002) J. Biol. Chem. , vol.277 , pp. 30859-30869
    • Dixon, D.P.1    Davis, B.G.2    Edwards, R.3
  • 27
    • 0041508533 scopus 로고    scopus 로고
    • Chloroplast-expressed glutamine synthetase in glycine and related Leguminosae: phylogeny, gene duplication, and ancient polyploidy
    • Doyle J.J., Doyle J.L., and Harbison C. Chloroplast-expressed glutamine synthetase in glycine and related Leguminosae: phylogeny, gene duplication, and ancient polyploidy. Syst. Bot. 28 (2003) 567-577
    • (2003) Syst. Bot. , vol.28 , pp. 567-577
    • Doyle, J.J.1    Doyle, J.L.2    Harbison, C.3
  • 28
    • 0346758118 scopus 로고    scopus 로고
    • Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine)
    • Doyle J.J., Doyle J.L., Rauscher J.T., and Brown A.H.D. Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine). New Phytol. 161 (2004) 121-132
    • (2004) New Phytol. , vol.161 , pp. 121-132
    • Doyle, J.J.1    Doyle, J.L.2    Rauscher, J.T.3    Brown, A.H.D.4
  • 29
    • 0026834195 scopus 로고
    • Characterization of cDNAs encoding two isoforms of granule-bound starch synthase which show differential expression in developing storage organs of pea and potato
    • Dry I., Smith A., Edwards A., Bhattacharyya M., Dunn P., and Martin C. Characterization of cDNAs encoding two isoforms of granule-bound starch synthase which show differential expression in developing storage organs of pea and potato. Plant J. 2 (1992) 193-202
    • (1992) Plant J. , vol.2 , pp. 193-202
    • Dry, I.1    Smith, A.2    Edwards, A.3    Bhattacharyya, M.4    Dunn, P.5    Martin, C.6
  • 30
    • 0032935861 scopus 로고    scopus 로고
    • ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
    • Emanuelsson O., Nielsen H., and Von Heijne G. ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci. 8 (1999) 978-984
    • (1999) Protein Sci. , vol.8 , pp. 978-984
    • Emanuelsson, O.1    Nielsen, H.2    Von Heijne, G.3
  • 31
    • 0037362098 scopus 로고    scopus 로고
    • The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the TRNL/F region of chloroplast DNA
    • Eriksson T., Hibbs M.S., Yoder A.D., Delwiche C.F., and Donoghue M.J. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the TRNL/F region of chloroplast DNA. Int. J. Plant Sci. 164 (2003) 197-211
    • (2003) Int. J. Plant Sci. , vol.164 , pp. 197-211
    • Eriksson, T.1    Hibbs, M.S.2    Yoder, A.D.3    Delwiche, C.F.4    Donoghue, M.J.5
  • 32
    • 0036743062 scopus 로고    scopus 로고
    • The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes
    • Evans R.C., and Campbell C.S. The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes. Am. J. Bot. 89 (2002) 1478-1484
    • (2002) Am. J. Bot. , vol.89 , pp. 1478-1484
    • Evans, R.C.1    Campbell, C.S.2
  • 33
    • 0034514038 scopus 로고    scopus 로고
    • Granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility
    • Evans R.C., Alice L.A., Campbell C.S., Kellogg E.A., and Dickinson T.A. Granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. Mol. Phylogenet. Evol. 17 (2000) 388-400
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 388-400
    • Evans, R.C.1    Alice, L.A.2    Campbell, C.S.3    Kellogg, E.A.4    Dickinson, T.A.5
  • 35
    • 0042904225 scopus 로고
    • Crossability and phylogenetic relations in the main European species of Fragaria
    • Federova N.J. Crossability and phylogenetic relations in the main European species of Fragaria. (Compt. Rend. Doklady) Acad. Sci. USSR 52 (1946) 545-547
    • (1946) (Compt. Rend. Doklady) Acad. Sci. USSR , vol.52 , pp. 545-547
    • Federova, N.J.1
  • 36
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 37
    • 42649126373 scopus 로고    scopus 로고
    • Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
    • Flagel E., Udall J., Nettleton D., and Wendel J.F. Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. BMC Biol. 6 (2008) 16
    • (2008) BMC Biol. , vol.6 , pp. 16
    • Flagel, E.1    Udall, J.2    Nettleton, D.3    Wendel, J.F.4
  • 38
    • 34250837815 scopus 로고    scopus 로고
    • Strawberry genes and strawberry genomics
    • Folta K.M., and Davis T.M. Strawberry genes and strawberry genomics. Crit. Rev. Plant Sci. 25 (2006) 399-415
    • (2006) Crit. Rev. Plant Sci. , vol.25 , pp. 399-415
    • Folta, K.M.1    Davis, T.M.2
  • 39
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A., Lynch M., Pickett F.B., Amores A., Yan Y.-l., and Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151 (1999) 1531-1545
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.-l.5    Postlethwait, J.6
  • 40
    • 43049102034 scopus 로고    scopus 로고
    • Molecular phylogeny and reticulate origins of the polyploid Bromus species from section Genea (POACEAE)
    • Fortune P.M., Pourtau N., Viron N., and Aïnouche M.L. Molecular phylogeny and reticulate origins of the polyploid Bromus species from section Genea (POACEAE). Am. J. Bot. 95 (2008) 454-464
    • (2008) Am. J. Bot. , vol.95 , pp. 454-464
    • Fortune, P.M.1    Pourtau, N.2    Viron, N.3    Aïnouche, M.L.4
  • 42
    • 37849034684 scopus 로고    scopus 로고
    • Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
    • Gaeta R.T., Pires J.C., Iniguez-Luy F., Leon E., and Osborn T.C. Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 19 (2007) 3403-3417
    • (2007) Plant Cell , vol.19 , pp. 3403-3417
    • Gaeta, R.T.1    Pires, J.C.2    Iniguez-Luy, F.3    Leon, E.4    Osborn, T.C.5
  • 43
    • 34848831415 scopus 로고    scopus 로고
    • The Leptynia hispanica species complex (Insecta Phasmida): polyploidy, parthenogenesis, hybridization and more
    • Ghiselli F., Milani L., Scali V., and Passamonti M. The Leptynia hispanica species complex (Insecta Phasmida): polyploidy, parthenogenesis, hybridization and more. Mol. Ecol. 16 (2007) 4256-4268
    • (2007) Mol. Ecol. , vol.16 , pp. 4256-4268
    • Ghiselli, F.1    Milani, L.2    Scali, V.3    Passamonti, M.4
  • 44
    • 33644759217 scopus 로고    scopus 로고
    • Extensive intraspecific polymorphism detected by SSCP at the nuclear C-mos gene in the endemic Iberian lizard Lacerta schreiberi
    • Godinho R., Domingues V., Crespo E.G., and Ferrand N. Extensive intraspecific polymorphism detected by SSCP at the nuclear C-mos gene in the endemic Iberian lizard Lacerta schreiberi. Mol. Ecol. 15 (2006) 731-738
    • (2006) Mol. Ecol. , vol.15 , pp. 731-738
    • Godinho, R.1    Domingues, V.2    Crespo, E.G.3    Ferrand, N.4
  • 45
    • 34250302727 scopus 로고    scopus 로고
    • Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)
    • Grover C.E., Kim H., Wing R.A., Paterson A.H., and Wendel J.F. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). Plant J. 50 (2007) 995-1006
    • (2007) Plant J. , vol.50 , pp. 995-1006
    • Grover, C.E.1    Kim, H.2    Wing, R.A.3    Paterson, A.H.4    Wendel, J.F.5
  • 46
    • 0036613509 scopus 로고    scopus 로고
    • Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
    • Gu X., Wang Y., and Gu J. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet. 31 (2002) 205-209
    • (2002) Nat. Genet. , vol.31 , pp. 205-209
    • Gu, X.1    Wang, Y.2    Gu, J.3
  • 47
    • 67349257508 scopus 로고    scopus 로고
    • Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic Acids Symposium Series 41, pp. 95-98.
    • Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic Acids Symposium Series 41, pp. 95-98.
  • 48
    • 0030946701 scopus 로고    scopus 로고
    • Chloroplast DNA restriction fragment variation among strawberry (Fragaria spp.)
    • Harrison R.E., Luby J.J., and Furnier G.R. Chloroplast DNA restriction fragment variation among strawberry (Fragaria spp.). Taxa. J. Amer. Soc. Hort. Sci. 122 (1997) 63-68
    • (1997) Taxa. J. Amer. Soc. Hort. Sci. , vol.122 , pp. 63-68
    • Harrison, R.E.1    Luby, J.J.2    Furnier, G.R.3
  • 49
    • 0030753874 scopus 로고    scopus 로고
    • Morphological and molecular variation among populations of octoploid Fragaria virginiana and F. chiloensis (Rosaceae) from North America
    • Harrison R.E., Luby J.J., Furnier G.R., and Hancock J.F. Morphological and molecular variation among populations of octoploid Fragaria virginiana and F. chiloensis (Rosaceae) from North America. Am. J. Bot. 84 (1997) 612-620
    • (1997) Am. J. Bot. , vol.84 , pp. 612-620
    • Harrison, R.E.1    Luby, J.J.2    Furnier, G.R.3    Hancock, J.F.4
  • 50
    • 35148886529 scopus 로고    scopus 로고
    • Polyploids with different origins and ancestors form a single sexual polyploid species
    • Holloway A.K., Cannatella D.C., Gerhardt H.C., and Hillis D.M. Polyploids with different origins and ancestors form a single sexual polyploid species. Am. Nat. 167 (2006) E88-E101
    • (2006) Am. Nat. , vol.167
    • Holloway, A.K.1    Cannatella, D.C.2    Gerhardt, H.C.3    Hillis, D.M.4
  • 51
    • 43149114448 scopus 로고    scopus 로고
    • Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant
    • Hovav R., Udall J.A., Rapp R., Flagel L., and Wendel J.F. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. PNAS 105 (2008) 6191-6195
    • (2008) PNAS , vol.105 , pp. 6191-6195
    • Hovav, R.1    Udall, J.A.2    Rapp, R.3    Flagel, L.4    Wendel, J.F.5
  • 53
    • 0037551902 scopus 로고    scopus 로고
    • The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear Waxy and plastid rps16
    • Ingram A.L., and Doyle J.J. The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear Waxy and plastid rps16. Am. J. Bot. 90 (2003) 116-122
    • (2003) Am. J. Bot. , vol.90 , pp. 116-122
    • Ingram, A.L.1    Doyle, J.J.2
  • 54
    • 0036241339 scopus 로고    scopus 로고
    • Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
    • Kashkush K., Feldman M., and Levy A.A. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160 (2002) 1651-1659
    • (2002) Genetics , vol.160 , pp. 1651-1659
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 55
    • 34248145207 scopus 로고    scopus 로고
    • Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.)
    • Keyte A.L., Percifield R., Liu B., and Wendel J.F. Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J. Heredity 97 (2006) 444-450
    • (2006) J. Heredity , vol.97 , pp. 444-450
    • Keyte, A.L.1    Percifield, R.2    Liu, B.3    Wendel, J.F.4
  • 56
    • 4344683314 scopus 로고    scopus 로고
    • Occurrence of polyploidy in the fishes
    • Leggatt R.A., and Iwama G.K. Occurrence of polyploidy in the fishes. Rev. Fish Biol. Fish. 13 (2003) 237-246
    • (2003) Rev. Fish Biol. Fish. , vol.13 , pp. 237-246
    • Leggatt, R.A.1    Iwama, G.K.2
  • 57
    • 33646423282 scopus 로고    scopus 로고
    • Allopolyploid origin of Cardamine asarifolia (Brassicaceae): incongruence between plastid and nuclear ribosomal DNA sequences solved by a single-copy nuclear gene
    • Lihová J., Shimizub K.K., and Marhold K. Allopolyploid origin of Cardamine asarifolia (Brassicaceae): incongruence between plastid and nuclear ribosomal DNA sequences solved by a single-copy nuclear gene. Mol. Phylogenet. Evol. 39 (2006) 759-786
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 759-786
    • Lihová, J.1    Shimizub, K.K.2    Marhold, K.3
  • 58
    • 0033844893 scopus 로고    scopus 로고
    • S1 analysis of long PCR heteroduplexes: detection of chloroplast indel polymorphisms in Fragaria
    • Lin J., and Davis T.M. S1 analysis of long PCR heteroduplexes: detection of chloroplast indel polymorphisms in Fragaria. Theor. Appl. Genet. 101 (2000) 415-420
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 415-420
    • Lin, J.1    Davis, T.M.2
  • 59
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 60
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch M., and Force A. The probability of duplicate gene preservation by subfunctionalization. Genetics 154 (2000) 459-473
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 61
    • 0035667916 scopus 로고    scopus 로고
    • Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences
    • Mason-Gamer R.J. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences. Syst. Bot. 26 (2001) 757-768
    • (2001) Syst. Bot. , vol.26 , pp. 757-768
    • Mason-Gamer, R.J.1
  • 62
    • 1642401473 scopus 로고    scopus 로고
    • Reticulate evolution, introgression, and intertribal gene capture in an Allohexaploid Grass
    • Mason-Gamer R.J. Reticulate evolution, introgression, and intertribal gene capture in an Allohexaploid Grass. Syst. Biol. 53 (2004) 25-37
    • (2004) Syst. Biol. , vol.53 , pp. 25-37
    • Mason-Gamer, R.J.1
  • 63
    • 0036613237 scopus 로고    scopus 로고
    • Extensive genomic duplication during early chordate evolution
    • McLysaght A., Hokamp K., and Wolfe K.H. Extensive genomic duplication during early chordate evolution. Nat. Genet. 31 (2002) 200-204
    • (2002) Nat. Genet. , vol.31 , pp. 200-204
    • McLysaght, A.1    Hokamp, K.2    Wolfe, K.H.3
  • 64
    • 0036846261 scopus 로고    scopus 로고
    • Polymerase chain reaction-single strand conformation polymorphism analyses of nuclear and chloroplast DNA provide evidence for recombination, multiple introductions and nascent speciation in the Caulerpa taxifolia complex
    • Meusnier I., Valero M., Destombe C., Gode C., Desmarais E., Bonhomme F., Stam W.T., and Olsen J.L. Polymerase chain reaction-single strand conformation polymorphism analyses of nuclear and chloroplast DNA provide evidence for recombination, multiple introductions and nascent speciation in the Caulerpa taxifolia complex. Mol. Ecol. 11 (2002) 2317-2325
    • (2002) Mol. Ecol. , vol.11 , pp. 2317-2325
    • Meusnier, I.1    Valero, M.2    Destombe, C.3    Gode, C.4    Desmarais, E.5    Bonhomme, F.6    Stam, W.T.7    Olsen, J.L.8
  • 65
    • 14744269229 scopus 로고    scopus 로고
    • The evolutionary dynamics of plant duplicate genes
    • Moore R., and Purugganan M. The evolutionary dynamics of plant duplicate genes. Curr. Opin. Plant Biol. 8 (2005) 122-128
    • (2005) Curr. Opin. Plant Biol. , vol.8 , pp. 122-128
    • Moore, R.1    Purugganan, M.2
  • 68
    • 0031172494 scopus 로고    scopus 로고
    • Detection and isolation of nuclear haplotypes by PCR-SSCP
    • Ortí G., Hare M.P., and Avise J.C. Detection and isolation of nuclear haplotypes by PCR-SSCP. Mol. Ecol. 6 (1997) 575-580
    • (1997) Mol. Ecol. , vol.6 , pp. 575-580
    • Ortí, G.1    Hare, M.P.2    Avise, J.C.3
  • 70
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • Otto S.P., and Whitton J. Polyploid incidence and evolution. Annu. Rev. Genet. (2000) 401-437
    • (2000) Annu. Rev. Genet. , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 71
    • 0038817812 scopus 로고    scopus 로고
    • New evidence for genome-wide duplications at the origin of vertebrates using an Amphioxus gene set and completed animal genomes
    • Panopoulou G., Hennig S., Groth D., Krause A., Poustka A.J., Herwig R., Vingron M., and Lehrach H. New evidence for genome-wide duplications at the origin of vertebrates using an Amphioxus gene set and completed animal genomes. Genome Res. 13 (2003) 1056-1066
    • (2003) Genome Res. , vol.13 , pp. 1056-1066
    • Panopoulou, G.1    Hennig, S.2    Groth, D.3    Krause, A.4    Poustka, A.J.5    Herwig, R.6    Vingron, M.7    Lehrach, H.8
  • 72
    • 16344386197 scopus 로고    scopus 로고
    • Polyploidy, evolutionary opportunity, and crop adaptation
    • Paterson A.H. Polyploidy, evolutionary opportunity, and crop adaptation. Genetica 123 (2005) 191-196
    • (2005) Genetica , vol.123 , pp. 191-196
    • Paterson, A.H.1
  • 73
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson A.H., Bowers J.E., and Chapman B.A. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl. Acad. Sci. USA 101 (2004) 9903-9908
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 76
    • 11144224315 scopus 로고    scopus 로고
    • Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome
    • Pontes O., Neves N., Silva M., Lewis M.S., Madlung A., Comai L., Viegas W., and Pikaard C.S. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc. Natl. Acad. Sci. USA 101 (2004) 18240-18245
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 18240-18245
    • Pontes, O.1    Neves, N.2    Silva, M.3    Lewis, M.S.4    Madlung, A.5    Comai, L.6    Viegas, W.7    Pikaard, C.S.8
  • 77
    • 34250737464 scopus 로고    scopus 로고
    • Origin and evolution of North American polyploid Silene (Caryophyllaceae)
    • Popp M., and Oxelman B. Origin and evolution of North American polyploid Silene (Caryophyllaceae). Am. J. Bot. 94 (2007) 330-349
    • (2007) Am. J. Bot. , vol.94 , pp. 330-349
    • Popp, M.1    Oxelman, B.2
  • 78
    • 0034130078 scopus 로고    scopus 로고
    • Phylogenetic relationships among species of Fragaria (Rosaceae) inferred from non-coding nuclear and chloroplast DNA sequences
    • Potter D., Luby J.J., and Harrison R.E. Phylogenetic relationships among species of Fragaria (Rosaceae) inferred from non-coding nuclear and chloroplast DNA sequences. Syst. Bot. 25 (2000) 337-348
    • (2000) Syst. Bot. , vol.25 , pp. 337-348
    • Potter, D.1    Luby, J.J.2    Harrison, R.E.3
  • 79
    • 0036214259 scopus 로고    scopus 로고
    • Phylogenetic relationships in Rosaceae inferred from chloroplast matK and trnL-trnF nucleotide sequence data
    • Potter D., Gao F., Esteban Bortiri P., Oh S.-H., and Baggett S. Phylogenetic relationships in Rosaceae inferred from chloroplast matK and trnL-trnF nucleotide sequence data. Plant Syst. Evol. (2002) 77-89
    • (2002) Plant Syst. Evol. , pp. 77-89
    • Potter, D.1    Gao, F.2    Esteban Bortiri, P.3    Oh, S.-H.4    Baggett, S.5
  • 81
    • 55749114231 scopus 로고    scopus 로고
    • Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry"
    • Rousseau-Gueutin M., Lerceteau-Köhler E., Barrot L., Sargent D.J., Monfort A., Simpson D., Arùs P., and Denoyes-Rothan B. Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry". Genetics 179 (2008) 2045-2060
    • (2008) Genetics , vol.179 , pp. 2045-2060
    • Rousseau-Gueutin, M.1    Lerceteau-Köhler, E.2    Barrot, L.3    Sargent, D.J.4    Monfort, A.5    Simpson, D.6    Arùs, P.7    Denoyes-Rothan, B.8
  • 82
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 83
    • 16344367626 scopus 로고    scopus 로고
    • Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
    • Salmon A., Aïnouche M.L., and Wendel J.F. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol. Ecol. 14 (2005) 1163-1175
    • (2005) Mol. Ecol. , vol.14 , pp. 1163-1175
    • Salmon, A.1    Aïnouche, M.L.2    Wendel, J.F.3
  • 84
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • Sang T. Utility of low-copy nuclear gene sequences in plant phylogenetics. Critl. Rev. Biochem. Mol. 37 (2002) 121-147
    • (2002) Critl. Rev. Biochem. Mol. , vol.37 , pp. 121-147
    • Sang, T.1
  • 85
    • 1342287554 scopus 로고    scopus 로고
    • De novo variation in life history traits and responses to growth conditions of resynthesized polyploid Brassica napus (Brassicaceae)
    • Schranz M.E., and Osborn T.C. De novo variation in life history traits and responses to growth conditions of resynthesized polyploid Brassica napus (Brassicaceae). Am. J. Bot. 91 (2004) 174-183
    • (2004) Am. J. Bot. , vol.91 , pp. 174-183
    • Schranz, M.E.1    Osborn, T.C.2
  • 86
    • 0000958361 scopus 로고
    • Origin of Fragaria polyploids. I. Cytoligical analysis
    • Senanayake Y.D.A., and Bringhurst R.S. Origin of Fragaria polyploids. I. Cytoligical analysis. J. Bot. 54 (1967) 221-228
    • (1967) J. Bot. , vol.54 , pp. 221-228
    • Senanayake, Y.D.A.1    Bringhurst, R.S.2
  • 88
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproductible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H., Kashkush K., Ozkan H., Feldman M., and Levy A.A. Sequence elimination and cytosine methylation are rapid and reproductible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13 (2001) 1749-1759
    • (2001) Plant Cell , vol.13 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 89
    • 0033736990 scopus 로고    scopus 로고
    • Purification and characterization of chloroplast dehydroascorbate reductase from spinach leaves
    • Shimaoka T., Yokota A., and Miyake C. Purification and characterization of chloroplast dehydroascorbate reductase from spinach leaves. Plant Cell Physiol. 41 (2000) 1110-1118
    • (2000) Plant Cell Physiol. , vol.41 , pp. 1110-1118
    • Shimaoka, T.1    Yokota, A.2    Miyake, C.3
  • 91
    • 0033927114 scopus 로고    scopus 로고
    • Phylogeny, duplication, and intraspecific variation of Adh sequences in new world diploid cottons (Gossypium L., Malvaceae)
    • Small R.L., and Wendel J.F. Phylogeny, duplication, and intraspecific variation of Adh sequences in new world diploid cottons (Gossypium L., Malvaceae). Mol. Phylogenet. Evol. 16 (2000) 73-84
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 73-84
    • Small, R.L.1    Wendel, J.F.2
  • 92
    • 0346091308 scopus 로고    scopus 로고
    • Use of nuclear genes for phylogeny reconstruction in plants
    • Small R.L., Cronn R.C., and Wendel J.F. Use of nuclear genes for phylogeny reconstruction in plants. Aust. Syst. Bot. 17 (2004) 145-170
    • (2004) Aust. Syst. Bot. , vol.17 , pp. 145-170
    • Small, R.L.1    Cronn, R.C.2    Wendel, J.F.3
  • 93
    • 0032229478 scopus 로고    scopus 로고
    • The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group
    • Small R.L., Ryburn J.A., Cronn R.C., Seelanan T., and Wendel J.F. The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. Am. J. Bot. 85 (1998) 1301-1315
    • (1998) Am. J. Bot. , vol.85 , pp. 1301-1315
    • Small, R.L.1    Ryburn, J.A.2    Cronn, R.C.3    Seelanan, T.4    Wendel, J.F.5
  • 94
    • 0013111961 scopus 로고    scopus 로고
    • Ancient allopolyploid speciation in Geinae (Rosaceae): evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences
    • Smedmark J.E.E., Eriksson T., Evans R.C., and Campbell C.S. Ancient allopolyploid speciation in Geinae (Rosaceae): evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences. Syst. Biol. 52 (2003) 374-385
    • (2003) Syst. Biol. , vol.52 , pp. 374-385
    • Smedmark, J.E.E.1    Eriksson, T.2    Evans, R.C.3    Campbell, C.S.4
  • 95
    • 0030013766 scopus 로고    scopus 로고
    • BCM search launcher-an integrated interface to molecular biology data base search and analysis services available on the World Wide Web
    • Smith R.F., Wiese B.A., Wojzynski M.K., Davison D.B., and Worley K.C. BCM search launcher-an integrated interface to molecular biology data base search and analysis services available on the World Wide Web. Genome Res. 6 (1996) 454-462
    • (1996) Genome Res. , vol.6 , pp. 454-462
    • Smith, R.F.1    Wiese, B.A.2    Wojzynski, M.K.3    Davison, D.B.4    Worley, K.C.5
  • 96
    • 0347352354 scopus 로고    scopus 로고
    • Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons
    • Soltis D.E., Soltis P.S., Pires J.C., Kovarik A., Tate J.A., and Mavrodiev E. Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons. Biol. J. Linnean Soc. 82 (2004) 485-501
    • (2004) Biol. J. Linnean Soc. , vol.82 , pp. 485-501
    • Soltis, D.E.1    Soltis, P.S.2    Pires, J.C.3    Kovarik, A.4    Tate, J.A.5    Mavrodiev, E.6
  • 97
    • 0036613675 scopus 로고    scopus 로고
    • Genome duplication strikes back
    • Spring J. Genome duplication strikes back. Nat. Genet. 31 (2002) 128-129
    • (2002) Nat. Genet. , vol.31 , pp. 128-129
    • Spring, J.1
  • 98
    • 18244391073 scopus 로고
    • Cytotaxonomy and phylogenetic relationships in the genus Fragaria
    • Montréal, pp
    • Staudt, G., 1959. Cytotaxonomy and phylogenetic relationships in the genus Fragaria. Ninth International Botanical Congress, Montréal, pp. 377.
    • (1959) Ninth International Botanical Congress , pp. 377
    • Staudt, G.1
  • 99
    • 0000490555 scopus 로고
    • Taxonomic studies in the genus Fragaria. Typification of Fragaria species known at the time of Linnaeus
    • Staudt G. Taxonomic studies in the genus Fragaria. Typification of Fragaria species known at the time of Linnaeus. Can. J. Bot. 40 (1962) 869-886
    • (1962) Can. J. Bot. , vol.40 , pp. 869-886
    • Staudt, G.1
  • 100
    • 0342788580 scopus 로고
    • Fragaria iturupensis, eine neue Erdbeerart aus Ostasien
    • Staudt G. Fragaria iturupensis, eine neue Erdbeerart aus Ostasien. Willdenowia 7 (1973) 101-104
    • (1973) Willdenowia , vol.7 , pp. 101-104
    • Staudt, G.1
  • 101
    • 0002728985 scopus 로고
    • The species of Fragaria, their taxonomy and geographical distribution
    • Staudt G. The species of Fragaria, their taxonomy and geographical distribution. Acta Hort. 265 (1989) 23-34
    • (1989) Acta Hort. , vol.265 , pp. 23-34
    • Staudt, G.1
  • 102
    • 34447509256 scopus 로고    scopus 로고
    • Notes on Asiatic Fragaria species: Fragaria nilgerrensis Schltdl
    • Staudt G. Notes on Asiatic Fragaria species: Fragaria nilgerrensis Schltdl. ex J. Gay. Bot. Jahr. Syst. 121 (1999) 297-310
    • (1999) ex J. Gay. Bot. Jahr. Syst. , vol.121 , pp. 297-310
    • Staudt, G.1
  • 103
    • 33749023717 scopus 로고    scopus 로고
    • Notes on Asiatic Fragaria species: III. Fragaria orientalis Losinsk and Fragaria mandshurica spec. nov
    • Staudt G. Notes on Asiatic Fragaria species: III. Fragaria orientalis Losinsk and Fragaria mandshurica spec. nov. Botanische Jahrbucher fur Systematik 124 (2003) 397-419
    • (2003) Botanische Jahrbucher fur Systematik , vol.124 , pp. 397-419
    • Staudt, G.1
  • 104
    • 33748988596 scopus 로고    scopus 로고
    • Notes on Asiatic Fragaria species: IV. Fragaria iinumae
    • Staudt G. Notes on Asiatic Fragaria species: IV. Fragaria iinumae. Botanische Jahrbucher fur Systematik 126 (2005) 163-175
    • (2005) Botanische Jahrbucher fur Systematik , vol.126 , pp. 163-175
    • Staudt, G.1
  • 105
    • 67349143718 scopus 로고    scopus 로고
    • Himalayan species of Fragaria (Rosaceae)
    • Staudt G. Himalayan species of Fragaria (Rosaceae). Botanische Jahrbucher fur Systematik 126 (2006) 483-508
    • (2006) Botanische Jahrbucher fur Systematik , vol.126 , pp. 483-508
    • Staudt, G.1
  • 106
    • 67349120312 scopus 로고    scopus 로고
    • Strawberry biogeography, genetics and systematics
    • 3-7 March, Huelva
    • Staudt, G. 2008. Strawberry biogeography, genetics and systematics. In VI International symposium, 3-7 March 2008, Huelva.
    • (2008) VI International symposium
    • Staudt, G.1
  • 107
    • 24744435543 scopus 로고    scopus 로고
    • Notes on Asiatic Fragaria species: Fragaria pentaphylla Losinsk and Fragaria tibetica spec. nov
    • Staudt G., and Dickoré W.B. Notes on Asiatic Fragaria species: Fragaria pentaphylla Losinsk and Fragaria tibetica spec. nov. Bot. Jahrb. Syst. 123 (2001) 341-354
    • (2001) Bot. Jahrb. Syst. , vol.123 , pp. 341-354
    • Staudt, G.1    Dickoré, W.B.2
  • 108
    • 67349173255 scopus 로고    scopus 로고
    • Notes on Asiatic Fragaria species V: Fragaria nipponica Makino and Fragaria iturupensis Staudt
    • in press
    • Staudt, G., Olbricht, K. in press. Notes on Asiatic Fragaria species V: Fragaria nipponica Makino and Fragaria iturupensis Staudt. Bot. Jahrb. Syst.
    • Bot. Jahrb. Syst
    • Staudt, G.1    Olbricht, K.2
  • 109
    • 50249178528 scopus 로고    scopus 로고
    • Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids
    • Steele P.R., Guisinger-Bellian M., Linder C.R., and Jansen R.K. Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids. Mol. Phylogenet. Evol. 48 (2008) 1013-1026
    • (2008) Mol. Phylogenet. Evol. , vol.48 , pp. 1013-1026
    • Steele, P.R.1    Guisinger-Bellian, M.2    Linder, C.R.3    Jansen, R.K.4
  • 110
    • 0033730043 scopus 로고    scopus 로고
    • SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology
    • Sunnucks P., Wilson A.C.C., Beheregaray L.B., Zenger K., French J., and Taylor A.C. SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Mol. Ecol. 9 (2000) 1699-1710
    • (2000) Mol. Ecol. , vol.9 , pp. 1699-1710
    • Sunnucks, P.1    Wilson, A.C.C.2    Beheregaray, L.B.3    Zenger, K.4    French, J.5    Taylor, A.C.6
  • 111
    • 67349264146 scopus 로고    scopus 로고
    • *. Phylogenetic Analysis Using Parsimony * and Other Methods, Version 4.0. Sinauer Associates, Sunderland, Massachusetts
    • *. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0. Sinauer Associates, Sunderland, Massachusetts.
  • 112
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • Tajima F. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135 (1993) 599-607
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 113
    • 34547781750 scopus 로고    scopus 로고
    • Tamura, K, Dudley, J, Nei, M, Kumar, S, 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) Software Version 4.0. Mol. Biol. Evol. 24, 1596-1599
    • Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) Software Version 4.0. Mol. Biol. Evol. 24, 1596-1599.
  • 114
    • 33746424003 scopus 로고    scopus 로고
    • Evolution and expression of homoeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid
    • Tate J.A., Ni Z., Scheen A.C., Koh J., Gilbert C.A., Chen Z.J., Soltis P.S., and Soltis D.E. Evolution and expression of homoeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics 173 (2006) 1599-1611
    • (2006) Genetics , vol.173 , pp. 1599-1611
    • Tate, J.A.1    Ni, Z.2    Scheen, A.C.3    Koh, J.4    Gilbert, C.A.5    Chen, Z.J.6    Soltis, P.S.7    Soltis, D.E.8
  • 115
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative, 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 116
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • The French-Italian Public Consortium for Grapevine Genome Characterization
    • The French-Italian Public Consortium for Grapevine Genome Characterization, 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467.
    • (2007) Nature , vol.449 , pp. 463-467
  • 118
    • 33748760611 scopus 로고    scopus 로고
    • Tuskan, G.A, DiFazio, S, Jansson, S, Bohlmann, J, Grigoriev, I, Hellsten, U, Putnam, N, Ralph, S, Rombauts, S, Salamov, A, Schein, J, Sterck, L, Aerts, A, Bhalerao, R.R, Bhalerao, R.P, Blaudez, D, Boerjan, W, Brun, A, Brunner, A, Busov, V, Campbell, M, Carlson, J, Chalot, M, Chapman, J, Chen, G.L, Cooper, D, Coutinho, P.M, Couturier, J, Covert, S, Cronk, Q, Cunningham, R, Davis, J, Degroeve, S, Dejardin, A, dePamphilis, C, Detter, J, Dirks, B, Dubchak, I, Duplessis, S, Ehlting, J, Ellis, B, Gendler, K, Goodstein, D, Gribskov, M, Grimwood, J, Groover, A, Gunter, L, Hamberger, B, Heinze, B, Helariutta, Y, Henrissat, B, Holligan, D, Holt, R, Huang, W, Islam-Faridi, N, Jones, S, Jones-Rhoades, M, Jorgensen, R, Joshi, C, Kangasjarvi, J, Karlsson, J, Kelleher, C, Kirkpatrick, R, Kirst, M, Kohler, A, Kalluri, U, Larimer, F, Leebens-Mack, J, Leple, J.C, Locascio, P, Lou, Y, Lucas, S, Martin, F, Montanini, B, Napoli, C
    • Tuskan, G.A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R.R., Bhalerao, R.P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G.L., Cooper, D., Coutinho, P.M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Dejardin, A., dePamphilis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehlting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjarvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leple, J.C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D.R., Nelson, C., Nieminen, K., Nilsson, O., Pereda, V., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouze, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C.J., Uberbacher, E., Unneberg, P., Vahala, J., Wall, K., Wessler, S., Yang, G., Yin, T., Douglas, C., Marra, M., Sandberg, G., Van de Peer, Y., Rokhsar, D., 2006. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596-1604.
  • 119
    • 33845574749 scopus 로고    scopus 로고
    • Polyploidy and crop improvement
    • Udall J.A., and Wendel J.F. Polyploidy and crop improvement. Crop Sci. 46 (2006) S3-S14
    • (2006) Crop Sci. , vol.46
    • Udall, J.A.1    Wendel, J.F.2
  • 121
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel J.F. Genome evolution in polyploids. Plant Mol. Biol. 42 (2000) 225-249
    • (2000) Plant Mol. Biol. , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 122
    • 0000162362 scopus 로고    scopus 로고
    • Phylogenetic incongruence: window into genome history and molecular evolution
    • Soltis D., Soltis P., and Doyle J.J. (Eds), Chapman and Hall, New-York
    • Wendel J.F., and Doyle J.J. Phylogenetic incongruence: window into genome history and molecular evolution. In: Soltis D., Soltis P., and Doyle J.J. (Eds). Molecular Systematics of Plants II (1998), Chapman and Hall, New-York 265-296
    • (1998) Molecular Systematics of Plants II , pp. 265-296
    • Wendel, J.F.1    Doyle, J.J.2
  • 123
    • 4344565193 scopus 로고    scopus 로고
    • Viburnum phylogeny: evidence from the duplicated nuclear gene GBSSI
    • Winkworth R.C., and Donoghue M.J. Viburnum phylogeny: evidence from the duplicated nuclear gene GBSSI. Mol. Phylogenet. Evol. 33 (2004) 109-126
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 109-126
    • Winkworth, R.C.1    Donoghue, M.J.2
  • 124
    • 0037350984 scopus 로고    scopus 로고
    • Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects
    • Zhang D.X., and Hewitt G.M. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol. Ecol. 12 (2003) 563-584
    • (2003) Mol. Ecol. , vol.12 , pp. 563-584
    • Zhang, D.X.1    Hewitt, G.M.2
  • 125
    • 27144503824 scopus 로고    scopus 로고
    • Cloning and mapping of genes involved in tomato ascorbic acid biosynthesis and metabolism
    • Zou L.P., Li H.X., Ouyang B., Zhang J.H., and Ye Z.B. Cloning and mapping of genes involved in tomato ascorbic acid biosynthesis and metabolism. Plant Sci. 170 (2006) 120-127
    • (2006) Plant Sci. , vol.170 , pp. 120-127
    • Zou, L.P.1    Li, H.X.2    Ouyang, B.3    Zhang, J.H.4    Ye, Z.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.