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Volumn 8, Issue 5, 1999, Pages 978-984

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

Author keywords

Chloroplast; Cleavage site; Neural networks; Protein sorting; Transit peptide

Indexed keywords

PEPTIDE; PROTEIN;

EID: 0032935861     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.8.5.978     Document Type: Article
Times cited : (1583)

References (27)
  • 1
    • 0032504057 scopus 로고    scopus 로고
    • Potential dual targeting of an Arabidopsis archaebacterial-like histidyl-tRNA synthetase to mitochondria and chloroplasts
    • Akashi K, Giandjean O, Small I. 1998. Potential dual targeting of an Arabidopsis archaebacterial-like histidyl-tRNA synthetase to mitochondria and chloroplasts. FEBS Lett 431:39-44.
    • (1998) FEBS Lett , vol.431 , pp. 39-44
    • Akashi, K.1    Giandjean, O.2    Small, I.3
  • 3
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. ISMB 2:28-36.
    • (1994) ISMB , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 0031864543 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
    • Bairoch A, Apweiler R. 1998. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998, Nucleic Acids Res 26:38-42.
    • (1998) Nucleic Acids Res , vol.26 , pp. 38-42
    • Bairoch, A.1    Apweiler, R.2
  • 5
    • 0025744474 scopus 로고
    • Prediction of human mRNA donor and acceptor sites from the DNA sequence
    • Brunak S, Engelbrecht J, Knudsen S. 1991. Prediction of human mRNA donor and acceptor sites from the DNA sequence. J Mol Biol 220:49-65.
    • (1991) J Mol Biol , vol.220 , pp. 49-65
    • Brunak, S.1    Engelbrecht, J.2    Knudsen, S.3
  • 6
    • 0030786269 scopus 로고    scopus 로고
    • A single precursor protein for ferrochelatase-I from Arabidopsis is imported in vitro into both chloroplasts and mitochondria
    • Chow KS, Singh P, Roper J, Smith A. 1997. A single precursor protein for ferrochelatase-I from Arabidopsis is imported in vitro into both chloroplasts and mitochondria. J Biol Chem 272:27565-27571.
    • (1997) J Biol Chem , vol.272 , pp. 27565-27571
    • Chow, K.S.1    Singh, P.2    Roper, J.3    Smith, A.4
  • 7
    • 0029347014 scopus 로고
    • Simultaneous targeting of pea glutathione reductase and of a bacterial fusion protein to chloroplasts and mitochondria in transgenic tobacco
    • Creissen G, Reynolds H, Xue YB, Mullineaux P. 1995. Simultaneous targeting of pea glutathione reductase and of a bacterial fusion protein to chloroplasts and mitochondria in transgenic tobacco. Plant J 8:167-175.
    • (1995) Plant J , vol.8 , pp. 167-175
    • Creissen, G.1    Reynolds, H.2    Xue, Y.B.3    Mullineaux, P.4
  • 8
    • 0025135468 scopus 로고
    • A conserved cleavage site motif in chloroplast transit peptides
    • Gavel Y, von Heijne G. 1990. A conserved cleavage site motif in chloroplast transit peptides. FEBS Lett 261:455-458.
    • (1990) FEBS Lett , vol.261 , pp. 455-458
    • Gavel, Y.1    Von Heijne, G.2
  • 10
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin S, Altschul SF. 1990. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 87:2264-2268.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 11
    • 0016772212 scopus 로고
    • Comparison of predicted and observed secondary structure of T4 phage lysozyme
    • Mathews BW. 1975. Comparison of predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 405:442-451.
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Mathews, B.W.1
  • 12
    • 0032167639 scopus 로고    scopus 로고
    • A single gene of chloroplast origin codes for mitochondrial and chloroplastic methionyl-tRNA synthetase in Arabidopsis thaliana
    • Menand B, Maréchal-Drouard L, Sakamoto W, Dietrich A, Wintz H. 1998. A single gene of chloroplast origin codes for mitochondrial and chloroplastic methionyl-tRNA synthetase in Arabidopsis thaliana. Proc Natl Acad Sci USA 95:11014-11019.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11014-11019
    • Menand, B.1    Maréchal-Drouard, L.2    Sakamoto, W.3    Dietrich, A.4    Wintz, H.5
  • 14
    • 0027105007 scopus 로고
    • A knowledge base for predicting protein localization sites in eukaryotic cells
    • Nakai K, Kanehisa M. 1992. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics 14:897-911.
    • (1992) Genomics , vol.14 , pp. 897-911
    • Nakai, K.1    Kanehisa, M.2
  • 15
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10:1-6.
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 16
    • 0030627982 scopus 로고    scopus 로고
    • Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis
    • Pedersen AG, Nielsen H. 1997. Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis. ISMB 5:226-233.
    • (1997) ISMB , vol.5 , pp. 226-233
    • Pedersen, A.G.1    Nielsen, H.2
  • 17
    • 0023803244 scopus 로고
    • Predicting the secondary structure of globular proteins using neural network models
    • Qian N, Sejnowski TJ. 1988. Predicting the secondary structure of globular proteins using neural network models. J Mol Biol 202:865-884.
    • (1988) J Mol Biol , vol.202 , pp. 865-884
    • Qian, N.1    Sejnowski, T.J.2
  • 18
    • 0032560485 scopus 로고    scopus 로고
    • Achloroplast processing enzyme functions as the general stromal processing peptidase
    • Richter S, Lamppa GK. 1998. Achloroplast processing enzyme functions as the general stromal processing peptidase. Proc Natl Acad Sci USA 95:7463-7468.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 7463-7468
    • Richter, S.1    Lamppa, G.K.2
  • 19
    • 0021765413 scopus 로고
    • Transport of proteins into chloroplasts. Partial purification of a chloroplast protease involved in the processing of important precursor polypeptides
    • Robinson C, Ellis RJ. 1984. Transport of proteins into chloroplasts. Partial purification of a chloroplast protease involved in the processing of important precursor polypeptides. Eur J Biochem 142:337-342.
    • (1984) Eur J Biochem , vol.142 , pp. 337-342
    • Robinson, C.1    Ellis, R.J.2
  • 20
    • 0032169929 scopus 로고    scopus 로고
    • Multiple pathways for the targeting of thylakoid proteins in chloroplasts
    • Robinson C, Hynds PJ, Robinson D, Mant A. 1998. Multiple pathways for the targeting of thylakoid proteins in chloroplasts. Plant Mol Biol 38:209-221.
    • (1998) Plant Mol Biol , vol.38 , pp. 209-221
    • Robinson, C.1    Hynds, P.J.2    Robinson, D.3    Mant, A.4
  • 22
    • 0031964126 scopus 로고    scopus 로고
    • Feature-extraction from endopeptidase cleavage sites in mitochondrial targeting peptides
    • Schneider G, Sjöling S, Wallin E, Wrede P, Glazier E, von Heijne G. 1998. Feature-extraction from endopeptidase cleavage sites in mitochondrial targeting peptides. Proteins 30:49-60.
    • (1998) Proteins , vol.30 , pp. 49-60
    • Schneider, G.1    Sjöling, S.2    Wallin, E.3    Wrede, P.4    Glazier, E.5    Von Heijne, G.6
  • 23
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider TD, Stephens RM. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res 18:6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 24
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon CE. 1948. A mathematical theory of communication. Bell System Tech J 27:379-423, 623-656.
    • (1948) Bell System Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 25
    • 0032168004 scopus 로고    scopus 로고
    • Protein translocation into and across the chloroplastic envelope membranes
    • Soll J, Tien R. 1998. Protein translocation into and across the chloroplastic envelope membranes. Plant Mol Biol 38:191-207.
    • (1998) Plant Mol Biol , vol.38 , pp. 191-207
    • Soll, J.1    Tien, R.2
  • 26
    • 0025297583 scopus 로고
    • The signal peptide
    • von Heijne G. 1990. The signal peptide. J Membr Biol 115:195-201.
    • (1990) J Membr Biol , vol.115 , pp. 195-201
    • Von Heijne, G.1
  • 27
    • 0024542834 scopus 로고
    • Domain structure of mitochondrial and chloroplast targeting peptides
    • von Heijne G, Steppuhn J, Herman SG. 1989. Domain structure of mitochondrial and chloroplast targeting peptides. Eur J Biochem 180:535-545.
    • (1989) Eur J Biochem , vol.180 , pp. 535-545
    • Von Heijne, G.1    Steppuhn, J.2    Herman, S.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.